HEADER GENE REGULATION/ANTITUMOR PROTEIN 23-AUG-02 1MIU TITLE STRUCTURE OF A BRCA2-DSS1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DELETED IN SPLIT HAND/SPLIT FOOT PROTEIN 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: DSS1, SPLIT HAND/FOOT DELETED PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: RESIDUES 2378-3115; COMPND 10 SYNONYM: BRCA2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PACG2T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PACG2T KEYWDS TUMOR SUPPRESSOR, BREAST CANCER SUSCEPTIBILITY, DNA-BINDING, GENE KEYWDS 2 REGULATION-ANTITUMOR PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,P.D.JEFFREY,J.MILLER,E.KINNUCAN,Y.SUN,N.H.THOMA,N.ZHENG, AUTHOR 2 P.L.CHEN,W.H.LEE,N.P.PAVLETICH REVDAT 3 14-FEB-24 1MIU 1 REMARK REVDAT 2 24-FEB-09 1MIU 1 VERSN REVDAT 1 25-SEP-02 1MIU 0 JRNL AUTH H.YANG,P.D.JEFFREY,J.MILLER,E.KINNUCAN,Y.SUN,N.H.THOMA, JRNL AUTH 2 N.ZHENG,P.L.CHEN,W.H.LEE,N.P.PAVLETICH JRNL TITL BRCA2 FUNCTION IN DNA BINDING AND RECOMBINATION FROM A JRNL TITL 2 BRCA2-DSS1-SSDNA STRUCTURE JRNL REF SCIENCE V. 297 1837 2002 JRNL REFN ISSN 0036-8075 JRNL PMID 12228710 JRNL DOI 10.1126/SCIENCE.297.5588.1837 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 26000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.950 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27074 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS-HCL, CACL2, NACL, DTT, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 80.25450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 114.13550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 80.25450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 114.13550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 80.25450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 114.13550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 80.25450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 114.13550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 142040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -629.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 160.50900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 228.27100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 160.50900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 228.27100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ASP B 26 REMARK 465 TRP B 27 REMARK 465 ALA B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 32 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 ALA B 36 REMARK 465 ASP B 46 REMARK 465 ASN B 47 REMARK 465 VAL B 48 REMARK 465 GLU B 49 REMARK 465 GLY B 64 REMARK 465 TYR B 65 REMARK 465 LYS B 66 REMARK 465 MET B 67 REMARK 465 GLU B 68 REMARK 465 THR B 69 REMARK 465 SER B 70 REMARK 465 ASN A 2378 REMARK 465 GLN A 2379 REMARK 465 LYS A 2380 REMARK 465 SER A 2381 REMARK 465 THR A 2382 REMARK 465 ASP A 2383 REMARK 465 GLY A 2384 REMARK 465 ASP A 2385 REMARK 465 ARG A 2386 REMARK 465 GLU A 2387 REMARK 465 ASP A 2388 REMARK 465 GLY A 2389 REMARK 465 ASN A 2390 REMARK 465 ASP A 2391 REMARK 465 SER A 2392 REMARK 465 HIS A 2393 REMARK 465 VAL A 2394 REMARK 465 ARG A 2395 REMARK 465 GLN A 2396 REMARK 465 PHE A 2397 REMARK 465 ASN A 2398 REMARK 465 ILE A 2615 REMARK 465 SER A 2616 REMARK 465 PRO A 2617 REMARK 465 SER A 2618 REMARK 465 THR A 2619 REMARK 465 LYS A 2620 REMARK 465 VAL A 2621 REMARK 465 SER A 2622 REMARK 465 GLU A 2623 REMARK 465 THR A 2624 REMARK 465 SER A 2625 REMARK 465 GLY A 2626 REMARK 465 GLY A 2627 REMARK 465 LYS A 2628 REMARK 465 THR A 2629 REMARK 465 SER A 2630 REMARK 465 GLY A 2631 REMARK 465 GLU A 2632 REMARK 465 ASP A 2633 REMARK 465 ALA A 2634 REMARK 465 ASN A 2635 REMARK 465 LYS A 2636 REMARK 465 ASP A 2796 REMARK 465 HIS A 2797 REMARK 465 GLU A 2798 REMARK 465 GLU A 2799 REMARK 465 ASP A 2800 REMARK 465 THR A 2801 REMARK 465 THR A 2802 REMARK 465 GLN A 2803 REMARK 465 ARG A 2804 REMARK 465 CYS A 2805 REMARK 465 VAL A 2806 REMARK 465 LEU A 2807 REMARK 465 GLY A 3104 REMARK 465 ASP A 3105 REMARK 465 SER A 3106 REMARK 465 PRO A 3107 REMARK 465 LYS A 3108 REMARK 465 TRP A 3109 REMARK 465 SER A 3110 REMARK 465 THR A 3111 REMARK 465 PRO A 3112 REMARK 465 ASN A 3113 REMARK 465 LYS A 3114 REMARK 465 ASP A 3115 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 7 CG CD REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 HIS B 37 CG ND1 CD2 CE1 NE2 REMARK 470 SER A2457 OG REMARK 470 PRO A2458 CG CD REMARK 470 LYS A2459 CG CD CE NZ REMARK 470 GLN A2460 CG CD OE1 NE2 REMARK 470 LEU A2461 CG CD1 CD2 REMARK 470 LYS A2468 CG CD CE NZ REMARK 470 GLU A2469 CG CD OE1 OE2 REMARK 470 VAL A2637 CG1 CG2 REMARK 470 LYS A2795 CG CD CE NZ REMARK 470 SER A2808 OG REMARK 470 ARG A2809 CG CD NE CZ NH1 NH2 REMARK 470 THR A2810 OG1 CG2 REMARK 470 PHE A2984 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A2985 CG CD OE1 NE2 REMARK 470 PRO A2986 CG CD REMARK 470 PRO A2987 CG CD REMARK 470 HIS A3100 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A3101 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 2861 N ALA A 2863 2.13 REMARK 500 O ALA A 2931 N SER A 2933 2.13 REMARK 500 NH1 ARG A 2415 OD1 ASP A 2527 2.15 REMARK 500 O ASP A 2601 N ALA A 2603 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A2712 CZ ARG A2712 NH1 0.085 REMARK 500 ARG A2712 CZ ARG A2712 NH2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A2725 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A2978 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 9 99.38 -65.55 REMARK 500 ALA B 24 85.56 -66.51 REMARK 500 VAL B 38 -64.51 86.19 REMARK 500 ASP B 41 -104.39 -14.52 REMARK 500 TRP B 43 -84.03 -37.67 REMARK 500 LEU B 56 23.89 -57.07 REMARK 500 ARG B 57 -22.30 -157.05 REMARK 500 LEU B 60 -7.09 -59.42 REMARK 500 ASP A2400 154.85 95.72 REMARK 500 MET A2402 18.05 50.69 REMARK 500 ARG A2422 -155.02 -137.91 REMARK 500 GLN A2427 78.59 -160.89 REMARK 500 SER A2430 -77.20 -49.87 REMARK 500 THR A2434 -76.14 -77.53 REMARK 500 SER A2437 -150.50 -108.44 REMARK 500 LEU A2439 72.60 1.37 REMARK 500 PRO A2440 124.74 -6.55 REMARK 500 SER A2443 117.81 -29.96 REMARK 500 LEU A2444 -18.76 -44.41 REMARK 500 GLN A2445 -83.30 -76.33 REMARK 500 ALA A2446 -43.51 -24.71 REMARK 500 ALA A2447 13.64 -63.54 REMARK 500 VAL A2448 27.86 -153.13 REMARK 500 ASP A2450 88.95 88.57 REMARK 500 ARG A2451 19.69 176.86 REMARK 500 ALA A2452 -173.13 56.69 REMARK 500 PRO A2453 158.36 -29.29 REMARK 500 SER A2454 28.51 -147.17 REMARK 500 CYS A2456 -139.73 -125.82 REMARK 500 SER A2457 -117.11 9.90 REMARK 500 PRO A2458 42.11 -94.15 REMARK 500 LYS A2459 147.87 61.03 REMARK 500 GLN A2460 -19.80 -48.39 REMARK 500 LEU A2461 164.78 154.25 REMARK 500 TYR A2462 47.64 -102.04 REMARK 500 ILE A2463 -71.73 -62.50 REMARK 500 VAL A2466 -139.75 -113.19 REMARK 500 SER A2467 166.88 176.92 REMARK 500 ASN A2472 37.89 -82.41 REMARK 500 SER A2475 16.20 -67.60 REMARK 500 GLU A2479 1.47 -69.12 REMARK 500 PHE A2481 -85.35 9.14 REMARK 500 GLN A2482 106.58 90.94 REMARK 500 ASP A2484 76.65 -65.66 REMARK 500 ILE A2485 -36.40 -22.63 REMARK 500 LYS A2491 -6.16 -146.86 REMARK 500 ASP A2504 -13.30 103.96 REMARK 500 ASP A2513 3.67 -57.38 REMARK 500 ALA A2516 68.60 -153.45 REMARK 500 LEU A2525 -6.66 -49.23 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A2853 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 101 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A2597 O REMARK 620 2 ASP A2684 O 73.0 REMARK 620 3 ALA A2685 O 65.3 44.7 REMARK 620 4 CYS A2686 SG 101.4 100.5 61.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 105 DBREF 1MIU B 1 70 UNP P60896 DSS1_HUMAN 1 70 DBREF 1MIU A 2378 3115 UNP P97929 BRCA2_MOUSE 2378 3115 SEQRES 1 B 70 MET SER GLU LYS LYS GLN PRO VAL ASP LEU GLY LEU LEU SEQRES 2 B 70 GLU GLU ASP ASP GLU PHE GLU GLU PHE PRO ALA GLU ASP SEQRES 3 B 70 TRP ALA GLY LEU ASP GLU ASP GLU ASP ALA HIS VAL TRP SEQRES 4 B 70 GLU ASP ASN TRP ASP ASP ASP ASN VAL GLU ASP ASP PHE SEQRES 5 B 70 SER ASN GLN LEU ARG ALA GLU LEU GLU LYS HIS GLY TYR SEQRES 6 B 70 LYS MET GLU THR SER SEQRES 1 A 738 ASN GLN LYS SER THR ASP GLY ASP ARG GLU ASP GLY ASN SEQRES 2 A 738 ASP SER HIS VAL ARG GLN PHE ASN LYS ASP LEU MET SER SEQRES 3 A 738 SER LEU GLN SER ALA ARG ASP LEU GLN ASP MET ARG ILE SEQRES 4 A 738 LYS ASN LYS GLU ARG ARG HIS LEU ARG LEU GLN PRO GLY SEQRES 5 A 738 SER LEU TYR LEU THR LYS SER SER THR LEU PRO ARG ILE SEQRES 6 A 738 SER LEU GLN ALA ALA VAL GLY ASP ARG ALA PRO SER ALA SEQRES 7 A 738 CYS SER PRO LYS GLN LEU TYR ILE TYR GLY VAL SER LYS SEQRES 8 A 738 GLU CYS ILE ASN VAL ASN SER LYS ASN ALA GLU TYR PHE SEQRES 9 A 738 GLN PHE ASP ILE GLN ASP HIS PHE GLY LYS GLU ASP LEU SEQRES 10 A 738 CYS ALA GLY LYS GLY PHE GLN LEU ALA ASP GLY GLY TRP SEQRES 11 A 738 LEU ILE PRO SER ASN ASP GLY LYS ALA GLY LYS GLU GLU SEQRES 12 A 738 PHE TYR ARG ALA LEU CYS ASP THR PRO GLY VAL ASP PRO SEQRES 13 A 738 LYS LEU ILE SER SER ILE TRP VAL ALA ASN HIS TYR ARG SEQRES 14 A 738 TRP ILE VAL TRP LYS LEU ALA ALA MET GLU PHE ALA PHE SEQRES 15 A 738 PRO LYS GLU PHE ALA ASN ARG CYS LEU ASN PRO GLU ARG SEQRES 16 A 738 VAL LEU LEU GLN LEU LYS TYR ARG TYR ASP VAL GLU ILE SEQRES 17 A 738 ASP ASN SER ARG ARG SER ALA LEU LYS LYS ILE LEU GLU SEQRES 18 A 738 ARG ASP ASP THR ALA ALA LYS THR LEU VAL LEU CYS ILE SEQRES 19 A 738 SER ASP ILE ILE SER PRO SER THR LYS VAL SER GLU THR SEQRES 20 A 738 SER GLY GLY LYS THR SER GLY GLU ASP ALA ASN LYS VAL SEQRES 21 A 738 ASP THR ILE GLU LEU THR ASP GLY TRP TYR ALA VAL ARG SEQRES 22 A 738 ALA GLN LEU ASP PRO PRO LEU MET ALA LEU VAL LYS SER SEQRES 23 A 738 GLY LYS LEU THR VAL GLY GLN LYS ILE ILE THR GLN GLY SEQRES 24 A 738 ALA GLU LEU VAL GLY SER PRO ASP ALA CYS ALA PRO LEU SEQRES 25 A 738 GLU ALA PRO ASP SER LEU ARG LEU LYS ILE SER ALA ASN SEQRES 26 A 738 SER THR ARG PRO ALA ARG TRP HIS SER ARG LEU GLY PHE SEQRES 27 A 738 PHE ARG ASP PRO ARG PRO PHE PRO LEU PRO LEU SER SER SEQRES 28 A 738 LEU PHE SER ASP GLY GLY ASN VAL GLY CYS VAL ASP ILE SEQRES 29 A 738 ILE VAL GLN ARG VAL TYR PRO LEU GLN TRP VAL GLU LYS SEQRES 30 A 738 THR VAL SER GLY LEU TYR ILE PHE ARG SER GLU ARG GLU SEQRES 31 A 738 GLU GLU LYS GLU ALA LEU ARG PHE ALA GLU ALA GLN GLN SEQRES 32 A 738 LYS LYS LEU GLU ALA LEU PHE THR LYS VAL HIS THR GLU SEQRES 33 A 738 PHE LYS ASP HIS GLU GLU ASP THR THR GLN ARG CYS VAL SEQRES 34 A 738 LEU SER ARG THR LEU THR ARG GLN GLN VAL HIS ALA LEU SEQRES 35 A 738 GLN ASP GLY ALA GLU LEU TYR ALA ALA VAL GLN TYR ALA SEQRES 36 A 738 SER ASP PRO ASP HIS LEU GLU ALA CYS PHE SER GLU GLU SEQRES 37 A 738 GLN LEU ARG ALA LEU ASN ASN TYR ARG GLN MET LEU ASN SEQRES 38 A 738 ASP LYS LYS GLN ALA ARG ILE GLN SER GLU PHE ARG LYS SEQRES 39 A 738 ALA LEU GLU SER ALA GLU LYS GLU GLU GLY LEU SER ARG SEQRES 40 A 738 ASP VAL THR THR VAL TRP LYS LEU ARG VAL THR SER TYR SEQRES 41 A 738 LYS LYS LYS GLU LYS SER ALA LEU LEU SER ILE TRP ARG SEQRES 42 A 738 PRO SER SER ASP LEU SER SER LEU LEU THR GLU GLY LYS SEQRES 43 A 738 ARG TYR ARG ILE TYR HIS LEU ALA VAL SER LYS SER LYS SEQRES 44 A 738 SER LYS PHE GLU ARG PRO SER ILE GLN LEU THR ALA THR SEQRES 45 A 738 LYS ARG THR GLN TYR GLN GLN LEU PRO VAL SER SER GLU SEQRES 46 A 738 THR LEU LEU GLN VAL TYR GLN PRO ARG GLU SER LEU HIS SEQRES 47 A 738 PHE SER ARG LEU SER ASP PRO ALA PHE GLN PRO PRO CYS SEQRES 48 A 738 SER GLU VAL ASP VAL VAL GLY VAL VAL VAL SER VAL VAL SEQRES 49 A 738 LYS PRO ILE GLY LEU ALA PRO LEU VAL TYR LEU SER ASP SEQRES 50 A 738 GLU CYS LEU ASN LEU LEU VAL VAL LYS PHE GLY ILE ASP SEQRES 51 A 738 LEU ASN GLU ASP ILE LYS PRO ARG VAL LEU ILE ALA ALA SEQRES 52 A 738 SER ASN LEU GLN CYS GLN PRO GLU SER THR SER GLY VAL SEQRES 53 A 738 PRO THR LEU PHE ALA GLY HIS PHE SER ILE PHE SER ALA SEQRES 54 A 738 SER PRO LYS GLU ALA TYR PHE GLN GLU LYS VAL ASN ASN SEQRES 55 A 738 LEU LYS HIS ALA ILE GLU ASN ILE ASP THR PHE TYR LYS SEQRES 56 A 738 GLU ALA GLU LYS LYS LEU ILE HIS VAL LEU GLU GLY ASP SEQRES 57 A 738 SER PRO LYS TRP SER THR PRO ASN LYS ASP HET HG A 101 1 HET HG A 102 1 HET HG A 103 1 HET HG A 104 1 HET HG A 105 1 HETNAM HG MERCURY (II) ION FORMUL 3 HG 5(HG 2+) HELIX 1 1 ASP B 9 GLY B 11 5 3 HELIX 2 2 ALA B 58 HIS B 63 1 6 HELIX 3 3 SER A 2403 ARG A 2421 1 19 HELIX 4 4 GLY A 2429 SER A 2436 1 8 HELIX 5 5 GLN A 2445 GLY A 2449 5 5 HELIX 6 6 ILE A 2485 GLY A 2490 1 6 HELIX 7 7 GLY A 2517 THR A 2528 1 12 HELIX 8 8 SER A 2537 MET A 2555 1 19 HELIX 9 9 ASN A 2569 ILE A 2585 1 17 HELIX 10 10 SER A 2591 GLU A 2598 1 8 HELIX 11 11 ASP A 2654 SER A 2663 1 10 HELIX 12 12 SER A 2700 THR A 2704 5 5 HELIX 13 13 PRO A 2725 LEU A 2729 5 5 HELIX 14 14 ARG A 2766 GLN A 2779 1 14 HELIX 15 15 LYS A 2781 THR A 2792 1 12 HELIX 16 16 THR A 2812 ALA A 2818 1 7 HELIX 17 17 ASP A 2821 TYR A 2831 1 11 HELIX 18 18 ARG A 2854 ASP A 2859 1 6 HELIX 19 19 LYS A 2860 ALA A 2872 1 13 HELIX 20 20 ALA A 2872 GLU A 2877 1 6 HELIX 21 21 SER A 2912 LEU A 2919 1 8 HELIX 22 22 SER A 2960 LEU A 2965 1 6 HELIX 23 23 PHE A 2976 ASP A 2981 5 6 HELIX 24 24 PHE A 3073 LYS A 3081 1 9 HELIX 25 25 LYS A 3081 ASN A 3086 1 6 HELIX 26 26 THR A 3089 GLU A 3103 1 15 SHEET 1 A 2 LEU B 13 GLU B 14 0 SHEET 2 A 2 ILE A2442 SER A2443 1 O ILE A2442 N GLU B 14 SHEET 1 B 2 PHE A2500 GLN A2501 0 SHEET 2 B 2 TRP A2507 LEU A2508 -1 O LEU A2508 N PHE A2500 SHEET 1 C 2 LEU A2607 VAL A2608 0 SHEET 2 C 2 GLY A2714 PHE A2715 -1 O GLY A2714 N VAL A2608 SHEET 1 D 3 CYS A2610 ILE A2611 0 SHEET 2 D 3 LEU A2642 THR A2643 -1 O THR A2643 N CYS A2610 SHEET 3 D 3 ALA A2648 VAL A2649 -1 O VAL A2649 N LEU A2642 SHEET 1 E 2 LEU A2679 VAL A2680 0 SHEET 2 E 2 ARG A2696 LEU A2697 -1 O ARG A2696 N VAL A2680 SHEET 1 F 6 VAL A2736 VAL A2746 0 SHEET 2 F 6 VAL A2889 SER A2896 -1 O ARG A2893 N ARG A2745 SHEET 3 F 6 ALA A2904 TRP A2909 -1 O LEU A2906 N LEU A2892 SHEET 4 F 6 GLN A2945 LEU A2957 1 O LEU A2946 N LEU A2905 SHEET 5 F 6 ARG A2924 LEU A2930 -1 N ARG A2926 O GLN A2955 SHEET 6 F 6 VAL A2736 VAL A2746 -1 N VAL A2739 O ILE A2927 SHEET 1 G 2 GLU A2753 LYS A2754 0 SHEET 2 G 2 TYR A2760 ILE A2761 -1 O ILE A2761 N GLU A2753 SHEET 1 H 6 LEU A3056 ALA A3058 0 SHEET 2 H 6 LEU A3019 PHE A3024 1 N LYS A3023 O ALA A3058 SHEET 3 H 6 LEU A3009 SER A3013 -1 N LEU A3012 O LEU A3020 SHEET 4 H 6 GLU A2990 VAL A3001 -1 N VAL A3001 O LEU A3009 SHEET 5 H 6 LEU A3037 GLN A3044 -1 O ILE A3038 N GLY A2995 SHEET 6 H 6 ILE A3063 SER A3065 -1 O SER A3065 N ALA A3039 LINK HG HG A 101 O LEU A2597 1555 1555 3.30 LINK HG HG A 101 O ASP A2684 1555 1555 3.01 LINK HG HG A 101 O ALA A2685 1555 1555 2.51 LINK HG HG A 101 SG CYS A2686 1555 1555 2.57 LINK HG HG A 102 SG CYS A3045 1555 1555 3.35 LINK HG HG A 103 O PRO A2987 1555 1555 3.48 LINK HG HG A 104 SG CYS A2567 1555 1555 2.69 LINK HG HG A 105 SG CYS A3016 1555 1555 3.41 SITE 1 AC1 5 LEU A2597 ASP A2684 ALA A2685 CYS A2686 SITE 2 AC1 5 LEU A2695 SITE 1 AC2 1 CYS A3045 SITE 1 AC3 2 PRO A2987 CYS A2988 SITE 1 AC4 2 CYS A2567 LEU B 10 SITE 1 AC5 1 CYS A3016 CRYST1 160.509 228.271 81.715 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012238 0.00000