HEADER STRUCTURAL PROTEIN 23-AUG-02 1MIX TITLE CRYSTAL STRUCTURE OF A FERM DOMAIN OF TALIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TALIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND AND THIRD SUBDOMAINS OF FERM DOMAIN (RESIDUES 196- COMPND 5 400); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FOCAL ADHESION, INTEGRIN BINDING, FERM DOMAIN, CYTOSKELETON, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.GARCIA-ALVAREZ,J.M.DE PEREDA,D.A.CALDERWOOD,T.S.ULMER,D.CRITCHLEY, AUTHOR 2 I.D.CAMPBELL,M.H.GINSBERG,R.C.LIDDINGTON REVDAT 3 14-FEB-24 1MIX 1 REMARK REVDAT 2 24-FEB-09 1MIX 1 VERSN REVDAT 1 28-JAN-03 1MIX 0 JRNL AUTH B.GARCIA-ALVAREZ,J.M.DE PEREDA,D.A.CALDERWOOD,T.S.ULMER, JRNL AUTH 2 D.CRITCHLEY,I.D.CAMPBELL,M.H.GINSBERG,R.C.LIDDINGTON JRNL TITL STRUCTURAL DETERMINANTS OF INTEGRIN RECOGNITION BY TALIN JRNL REF MOL.CELL V. 11 49 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12535520 JRNL DOI 10.1016/S1097-2765(02)00823-7 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1340819.410 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 17950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 37.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1293 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 51 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -2.44000 REMARK 3 B33 (A**2) : 3.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.470 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.550 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 56.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 37.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.71950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.71950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 1 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 196 CG CD CE NZ REMARK 480 LYS A 318 CG CD CE NZ REMARK 480 LYS A 320 CD CE NZ REMARK 480 LYS A 322 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 273 1.46 -68.82 REMARK 500 LYS A 274 81.57 39.19 REMARK 500 LYS A 320 120.60 -38.94 REMARK 500 LYS A 322 98.65 -170.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MIZ RELATED DB: PDB REMARK 900 FUSION PROTEIN CONSISTING OF TALIN AND INTEGRIN BETA3 REMARK 900 RELATED ID: 1MK7 RELATED DB: PDB REMARK 900 FUSION PROTEIN CONSISTING OF TALIN AND INTEGRIN BETA3 REMARK 900 RELATED ID: 1MK9 RELATED DB: PDB REMARK 900 FUSION PROTEIN CONSISTING OF TALIN AND INTEGRIN BETA3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS INFORMED THAT THE SEQUENCE OF CHICKEN REMARK 999 TALIN IS NOT AVAILABLE IN ANY REFERENCE REMARK 999 DATABASE. THE SEQUENCE HAS BEEN DESCRIBED IN REMARK 999 THE PUBLICATION: REMARK 999 HEMMINGS, L., REES, D.J.G., OHANIAN, V., BOLTON, REMARK 999 S.J., GILMORE, A.P., PATEL, N., PRIDDLE, H., REMARK 999 TREVITHICK, J.E., HYNES, R.O., & CRITCHLEY, D.R. REMARK 999 (1996). TALIN CONTAINS THREE ACTIN-BINDING SITES REMARK 999 EACH OF WHICH IS ADJACENT TO A VINCULIN-BINDING REMARK 999 SITE. J. CELL SCI., 109, 2715-2726. REMARK 999 AUTHORS ALSO INFORMED THAT RESIDUE MET 195 IS A REMARK 999 CLONING ARTIFACT. DBREF 1MIX A 196 400 UNP P54939 TLN1_CHICK 196 400 SEQRES 1 A 206 MET LYS PHE PHE TYR SER ASP GLN ASN VAL ASP SER ARG SEQRES 2 A 206 ASP PRO VAL GLN LEU ASN LEU LEU TYR VAL GLN ALA ARG SEQRES 3 A 206 ASP ASP ILE LEU ASN GLY SER HIS PRO VAL SER PHE ASP SEQRES 4 A 206 LYS ALA CYS GLU PHE ALA GLY TYR GLN CYS GLN ILE GLN SEQRES 5 A 206 PHE GLY PRO HIS ASN GLU GLN LYS HIS LYS PRO GLY PHE SEQRES 6 A 206 LEU GLU LEU LYS ASP PHE LEU PRO LYS GLU TYR ILE LYS SEQRES 7 A 206 GLN LYS GLY GLU ARG LYS ILE PHE MET ALA HIS LYS ASN SEQRES 8 A 206 CYS GLY ASN MET SER GLU ILE GLU ALA LYS VAL ARG TYR SEQRES 9 A 206 VAL LYS LEU ALA ARG SER LEU LYS THR TYR GLY VAL SER SEQRES 10 A 206 PHE PHE LEU VAL LYS GLU LYS MET LYS GLY LYS ASN LYS SEQRES 11 A 206 LEU VAL PRO ARG LEU LEU GLY ILE THR LYS GLU CYS VAL SEQRES 12 A 206 MET ARG VAL ASP GLU LYS THR LYS GLU VAL ILE GLN GLU SEQRES 13 A 206 TRP SER LEU THR ASN ILE LYS ARG TRP ALA ALA SER PRO SEQRES 14 A 206 LYS SER PHE THR LEU ASP PHE GLY ASP TYR GLN ASP GLY SEQRES 15 A 206 TYR TYR SER VAL GLN THR THR GLU GLY GLU GLN ILE ALA SEQRES 16 A 206 GLN LEU ILE ALA GLY TYR ILE ASP ILE ILE LEU FORMUL 2 HOH *173(H2 O) HELIX 1 1 SER A 200 SER A 206 1 7 HELIX 2 2 ASP A 208 ASN A 225 1 18 HELIX 3 3 SER A 231 GLY A 248 1 18 HELIX 4 4 GLU A 261 PHE A 265 5 5 HELIX 5 5 PRO A 267 ILE A 271 5 5 HELIX 6 6 GLY A 275 CYS A 286 1 12 HELIX 7 7 SER A 290 LEU A 305 1 16 HELIX 8 8 THR A 354 ILE A 356 5 3 HELIX 9 9 PHE A 370 GLN A 374 5 5 HELIX 10 10 GLU A 384 GLY A 394 1 11 SHEET 1 A 4 SER A 311 GLU A 317 0 SHEET 2 A 4 VAL A 326 ILE A 332 -1 O LEU A 330 N PHE A 313 SHEET 3 A 4 CYS A 336 ASP A 341 -1 O VAL A 340 N LEU A 329 SHEET 4 A 4 VAL A 347 SER A 352 -1 O TRP A 351 N VAL A 337 SHEET 1 B 3 ARG A 358 ALA A 361 0 SHEET 2 B 3 SER A 365 ASP A 369 -1 O THR A 367 N ALA A 360 SHEET 3 B 3 TYR A 378 GLN A 381 -1 O TYR A 378 N LEU A 368 CRYST1 55.439 55.970 68.242 90.00 111.25 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018038 0.000000 0.007016 0.00000 SCALE2 0.000000 0.017867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015723 0.00000