HEADER RIBOSOME 26-AUG-02 1MJ1 TITLE FITTING THE TERNARY COMPLEX OF EF-TU/TRNA/GTP AND RIBOSOMAL PROTEINS TITLE 2 INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHE-TRNA; COMPND 3 CHAIN: D, C; COMPND 4 OTHER_DETAILS: TAKEN FROM PDB ENTRIES 1GIX, 1TRA; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SARCIN-RICIN LOOP OF 23SRRNA; COMPND 7 CHAIN: Q; COMPND 8 OTHER_DETAILS: TAKEN FROM PDB ENTRY 1GIY; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HELIX 69 OF 23S RRNA; COMPND 11 CHAIN: R; COMPND 12 OTHER_DETAILS: TAKEN FROM PDB ENTRY 1GIY; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: ELONGATION FACTOR TU; COMPND 15 CHAIN: A; COMPND 16 OTHER_DETAILS: TAKEN FROM PDB ENTRY 1B23; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: S12 RIBOSOMAL PROTEIN; COMPND 19 CHAIN: O; COMPND 20 OTHER_DETAILS: TAKEN FROM PDB ENTRY 1GIX; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: S13 RIBOSOMAL PROTEIN; COMPND 23 CHAIN: P; COMPND 24 OTHER_DETAILS: TAKEN FROM PDB ENTRY 1GIX; COMPND 25 MOL_ID: 7; COMPND 26 MOLECULE: L11 RIBOSOMAL PROTEIN; COMPND 27 CHAIN: L; COMPND 28 OTHER_DETAILS: TAKEN FROM PDB ENTRY 1GIY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 MOL_ID: 5; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562; SOURCE 16 MOL_ID: 6; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 18 ORGANISM_TAXID: 562; SOURCE 19 MOL_ID: 7; SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 21 ORGANISM_TAXID: 562 KEYWDS 70S RIBOSOME, LOW RESOLUTION MODEL TERNARY COMPLEX, EF-TU, RIBOSOME EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN O, P, L; P ATOMS ONLY, CHAIN Q, R AUTHOR H.STARK,M.V.RODNINA,H.-J.WIEDEN,F.ZEMLIN,W.WINTERMEYER,M.VANHEEL REVDAT 7 14-FEB-24 1MJ1 1 REMARK LINK REVDAT 6 18-JUL-18 1MJ1 1 REMARK REVDAT 5 13-JUL-11 1MJ1 1 VERSN REVDAT 4 24-FEB-09 1MJ1 1 VERSN REVDAT 3 23-DEC-03 1MJ1 1 TITLE MODRES REVDAT 2 08-NOV-02 1MJ1 1 JRNL REVDAT 1 01-NOV-02 1MJ1 0 JRNL AUTH H.STARK,M.V.RODNINA,H.-J.WIEDEN,F.ZEMLIN,W.WINTERMEYER, JRNL AUTH 2 M.VAN HEEL JRNL TITL RIBOSOME INTERACTIONS OF AMINOACYL-TRNA AND ELONGATION JRNL TITL 2 FACTOR TU IN THE CODON RECOGNITION COMPLEX JRNL REF NAT.STRUCT.BIOL. V. 9 849 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12379845 REMARK 2 REMARK 2 RESOLUTION. 13.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SITUS, IMAGIC, AMIRA REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1B23 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : BEST VISUAL FIT USING THE PROGRAM REMARK 3 AMIRA (RIBOSOMAL PROTEINS), BEST REMARK 3 FIT USING THE PROGRAM SITUS (EF- REMARK 3 TU) REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--RIGID BODY DETAILS--FOR REMARK 3 S12, S13, SRL, HELIX69 ANS L11 ONLY BACKBONE COORDINATES ARE REMARK 3 DEPOSITED REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 13.00 REMARK 3 NUMBER OF PARTICLES : 24000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 1MJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000016946. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : EF-TU/TRNA/GTP E. COLI 70S REMARK 245 RIBOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : TRIS-HCL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 10-MAR-00 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 4.20 REMARK 245 MICROSCOPE MODEL : FEI/PHILIPS CM200FEG/SOPHIE REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 1.35 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 58500 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 120 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C, Q, R, A, O, P, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET O -3 REMARK 465 VAL O -2 REMARK 465 ALA O -1 REMARK 465 LEU O 0 REMARK 465 ALA O 125 REMARK 465 LYS O 126 REMARK 465 THR O 127 REMARK 465 ALA O 128 REMARK 465 ALA O 129 REMARK 465 LYS O 130 REMARK 465 LYS O 131 REMARK 465 MET P 0 REMARK 465 MET L -6 REMARK 465 ALA L -5 REMARK 465 LYS L -4 REMARK 465 LYS L -3 REMARK 465 VAL L -2 REMARK 465 ALA L -1 REMARK 465 ALA L 0 REMARK 465 ASP L 134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-1004 RELATED DB: EMDB DBREF 1MJ1 O 2 122 UNP P0A7S3 RS12_ECOLI 2 122 DBREF 1MJ1 D 1 76 PDB 1MJ1 1MJ1 1 76 DBREF 1MJ1 C 1 76 PDB 1MJ1 1MJ1 1 76 DBREF 1MJ1 Q 1 41 PDB 1MJ1 1MJ1 1 41 DBREF 1MJ1 R 1 27 PDB 1MJ1 1MJ1 1 27 DBREF 1MJ1 A 1 405 PDB 1MJ1 1MJ1 1 405 DBREF 1MJ1 P 0 125 PDB 1MJ1 1MJ1 0 125 DBREF 1MJ1 L -6 134 PDB 1MJ1 1MJ1 -6 134 SEQRES 1 D 76 G C G G A U U U A 2MG C U C SEQRES 2 D 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 D 76 C C A G A OMC U OMG A A YG A PSU SEQRES 4 D 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 D 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 D 76 A A U U C G C A C C A SEQRES 1 C 76 G C G G A U U U A 2MG C U C SEQRES 2 C 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 C 76 C C A G A OMC U OMG A A YG A PSU SEQRES 4 C 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 C 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 C 76 A A U U C G C A C C A SEQRES 1 Q 41 G G G G G G C U C U U C C SEQRES 2 Q 41 U A G U A C G A G A G G A SEQRES 3 Q 41 C C G G A A G G G A C G C SEQRES 4 Q 41 A C SEQRES 1 R 27 G C G G C C G U A A C U A SEQRES 2 R 27 U A A C G G U C C U A A G SEQRES 3 R 27 G SEQRES 1 A 405 ALA LYS GLY GLU PHE ILE ARG THR LYS ARG HIS VAL ASN SEQRES 2 A 405 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 A 405 LEU THR ALA ALA LEU THR TYR VAL ALA ALA ALA GLU ASN SEQRES 4 A 405 ARG ASN VAL GLU VAL LYS ASP TYR GLY ASP ILE ASP LYS SEQRES 5 A 405 ALA ARG GLU GLU ARG ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 A 405 ALA HIS VAL GLU TYR GLU THR ALA LYS ARG HIS TYR SER SEQRES 7 A 405 HIS VAL ASP CYS ARG GLY HIS ALA ASP TYR ILE LYS ASN SEQRES 8 A 405 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 A 405 VAL VAL SER ALA ALA ASP GLY ARG MET ARG GLN THR ARG SEQRES 10 A 405 GLU HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL ARG TYR SEQRES 11 A 405 ILE VAL VAL PHE MET ASN LYS VAL ASP MET VAL ASP ASP SEQRES 12 A 405 ARG GLU LEU LEU ASP LEU VAL GLU MET GLU VAL ARG ASP SEQRES 13 A 405 LEU LEU ASN GLN TYR GLU PHE ARG GLY ASP GLU VAL ARG SEQRES 14 A 405 VAL ILE ARG GLY SER ALA LEU LEU ALA LEU GLU GLU MET SEQRES 15 A 405 HIS LYS ASN ARG LYS THR LYS ARG GLY GLU ASN GLU TRP SEQRES 16 A 405 VAL ASP LYS ILE TRP GLU LEU LEU ASP ALA ILE ASP GLU SEQRES 17 A 405 TYR ILE ARG THR ARG VAL ARG ASP VAL ASP LYS ARG PHE SEQRES 18 A 405 LEU MET ARG VAL GLU ASP VAL PHE THR ILE THR GLY ARG SEQRES 19 A 405 GLY THR VAL ALA THR GLY ARG ILE GLU ARG GLY LYS VAL SEQRES 20 A 405 LYS VAL GLY ASP GLU VAL GLU ILE VAL GLY LEU ALA ARG SEQRES 21 A 405 GLU THR ARG LYS THR VAL VAL THR GLY VAL GLU MET HIS SEQRES 22 A 405 ARG LYS THR LEU GLN GLU GLY ILE ALA GLY ASP ASN VAL SEQRES 23 A 405 GLY LEU LEU LEU ARG GLY VAL SER ARG GLU GLU VAL GLU SEQRES 24 A 405 ARG GLY GLN VAL LEU ALA LYS ARG GLY SER ILE THR ARG SEQRES 25 A 405 HIS THR LYS PHE GLU ALA SER VAL TYR ILE LEU LYS LYS SEQRES 26 A 405 GLU GLU GLY GLY ARG HIS THR GLY PHE PHE THR GLY TYR SEQRES 27 A 405 ARG ARG GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 28 A 405 VAL VAL ARG LEU ARG GLN GLY VAL GLU MET VAL MET ARG SEQRES 29 A 405 GLY ASP ASN VAL THR PHE THR VAL GLU LEU ILE LYS ARG SEQRES 30 A 405 VAL ALA LEU GLU GLU GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 31 A 405 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL THR LYS ILE SEQRES 32 A 405 LEU GLU SEQRES 1 O 135 MET VAL ALA LEU PRO THR ILE ASN GLN LEU VAL ARG LYS SEQRES 2 O 135 GLY ARG GLU LYS VAL ARG LYS LYS SER LYS VAL PRO ALA SEQRES 3 O 135 LEU LYS GLY ALA PRO PHE ARG ARG GLY VAL CYS THR VAL SEQRES 4 O 135 VAL ARG THR VAL THR PRO LYS LYS PRO ASN SER ALA LEU SEQRES 5 O 135 ARG LYS VAL ALA LYS VAL ARG LEU THR SER GLY TYR GLU SEQRES 6 O 135 VAL THR ALA TYR ILE PRO GLY GLU GLY HIS ASN LEU GLN SEQRES 7 O 135 GLU HIS SER VAL VAL LEU ILE ARG GLY GLY ARG VAL LYS SEQRES 8 O 135 ASP LEU PRO GLY VAL ARG TYR HIS ILE VAL ARG GLY VAL SEQRES 9 O 135 TYR ASP ALA ALA GLY VAL LYS ASP ARG LYS LYS SER ARG SEQRES 10 O 135 SER LYS TYR GLY THR LYS LYS PRO LYS GLU ALA ALA LYS SEQRES 11 O 135 THR ALA ALA LYS LYS SEQRES 1 P 126 MET ALA ARG ILE ALA GLY VAL GLU ILE PRO ARG ASN LYS SEQRES 2 P 126 ARG VAL ASP VAL ALA LEU THR TYR ILE TYR GLY ILE GLY SEQRES 3 P 126 LYS ALA ARG ALA LYS GLU ALA LEU GLU LYS THR GLY ILE SEQRES 4 P 126 ASN PRO ALA THR ARG VAL LYS ASP LEU THR GLU ALA GLU SEQRES 5 P 126 VAL VAL ARG LEU ARG GLU TYR VAL GLU ASN THR TRP LYS SEQRES 6 P 126 LEU GLU GLY GLU LEU ARG ALA GLU VAL ALA ALA ASN ILE SEQRES 7 P 126 LYS ARG LEU MET ASP ILE GLY CYS TYR ARG GLY LEU ARG SEQRES 8 P 126 HIS ARG ARG GLY LEU PRO VAL ARG GLY GLN ARG THR ARG SEQRES 9 P 126 THR ASN ALA ARG THR ARG LYS GLY PRO ARG LYS THR VAL SEQRES 10 P 126 ALA GLY LYS LYS LYS ALA PRO ARG LYS SEQRES 1 L 141 MET ALA LYS LYS VAL ALA ALA GLN ILE LYS LEU GLN LEU SEQRES 2 L 141 PRO ALA GLY LYS ALA THR PRO ALA PRO PRO VAL GLY PRO SEQRES 3 L 141 ALA LEU GLY GLN HIS GLY VAL ASN ILE MET GLU PHE CYS SEQRES 4 L 141 LYS ARG PHE ASN ALA GLU THR ALA ASP LYS ALA GLY MET SEQRES 5 L 141 ILE LEU PRO VAL VAL ILE THR VAL TYR GLU ASP LYS SER SEQRES 6 L 141 PHE THR PHE ILE ILE LYS THR PRO PRO ALA SER PHE LEU SEQRES 7 L 141 LEU LYS LYS ALA ALA GLY ILE GLU LYS GLY SER SER GLU SEQRES 8 L 141 PRO LYS ARG LYS ILE VAL GLY LYS VAL THR ARG LYS GLN SEQRES 9 L 141 ILE GLU GLU ILE ALA LYS THR LYS MET PRO ASP LEU ASN SEQRES 10 L 141 ALA ASN SER LEU GLU ALA ALA MET LYS ILE ILE GLU GLY SEQRES 11 L 141 THR ALA LYS SER MET GLY ILE GLU VAL VAL ASP MODRES 1MJ1 2MG D 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1MJ1 H2U D 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 H2U D 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 M2G D 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1MJ1 OMC D 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 OMG D 34 G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1MJ1 YG D 37 G WYBUTOSINE MODRES 1MJ1 PSU D 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 5MC D 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 7MG D 46 G MODRES 1MJ1 5MC D 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 5MU D 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1MJ1 PSU D 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 1MA D 58 A MODRES 1MJ1 2MG C 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1MJ1 H2U C 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 H2U C 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 M2G C 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1MJ1 OMC C 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 OMG C 34 G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1MJ1 YG C 37 G WYBUTOSINE MODRES 1MJ1 PSU C 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 5MC C 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 7MG C 46 G MODRES 1MJ1 5MC C 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 5MU C 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1MJ1 PSU C 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1MJ1 1MA C 58 A HET 2MG D 10 24 HET H2U D 16 20 HET H2U D 17 20 HET M2G D 26 25 HET OMC D 32 21 HET OMG D 34 24 HET YG D 37 39 HET PSU D 39 20 HET 5MC D 40 21 HET 7MG D 46 24 HET 5MC D 49 21 HET 5MU D 54 21 HET PSU D 55 20 HET 1MA D 58 23 HET 2MG C 10 24 HET H2U C 16 20 HET H2U C 17 20 HET M2G C 26 25 HET OMC C 32 21 HET OMG C 34 24 HET YG C 37 39 HET PSU C 39 20 HET 5MC C 40 21 HET 7MG C 46 24 HET 5MC C 49 21 HET 5MU C 54 21 HET PSU C 55 20 HET 1MA C 58 23 HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM YG WYBUTOSINE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE HETSYN YG Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4, HETSYN 2 YG 9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL- HETSYN 3 YG 9-OXO-METHYL ESTER FORMUL 1 2MG 2(C11 H16 N5 O8 P) FORMUL 1 H2U 4(C9 H15 N2 O9 P) FORMUL 1 M2G 2(C12 H18 N5 O8 P) FORMUL 1 OMC 2(C10 H16 N3 O8 P) FORMUL 1 OMG 2(C11 H16 N5 O8 P) FORMUL 1 YG 2(C21 H29 N6 O12 P) FORMUL 1 PSU 4(C9 H13 N2 O9 P) FORMUL 1 5MC 4(C10 H16 N3 O8 P) FORMUL 1 7MG 2(C11 H18 N5 O8 P) FORMUL 1 5MU 2(C10 H15 N2 O9 P) FORMUL 1 1MA 2(C11 H16 N5 O7 P) HELIX 1 1 GLY A 23 ASN A 39 1 17 HELIX 2 2 ASP A 46 ASP A 51 1 6 HELIX 3 3 ALA A 53 ARG A 59 1 7 HELIX 4 4 HIS A 85 ASP A 87 5 3 HELIX 5 5 TYR A 88 ALA A 97 1 10 HELIX 6 6 MET A 113 VAL A 126 1 14 HELIX 7 7 LYS A 137 VAL A 141 5 5 HELIX 8 8 ASP A 143 TYR A 161 1 19 HELIX 9 9 SER A 174 ARG A 186 1 13 HELIX 10 10 ASN A 193 TYR A 209 1 17 HELIX 11 11 SER A 294 VAL A 298 5 5 HELIX 12 12 LYS A 324 GLY A 328 5 5 SHEET 1 A 6 ALA A 66 GLU A 71 0 SHEET 2 A 6 ARG A 75 ASP A 81 -1 O HIS A 79 N VAL A 68 SHEET 3 A 6 ARG A 10 ILE A 17 1 N ARG A 10 O HIS A 76 SHEET 4 A 6 ALA A 102 SER A 107 1 O VAL A 105 N ILE A 17 SHEET 5 A 6 ILE A 131 ASN A 136 1 O VAL A 132 N LEU A 104 SHEET 6 A 6 VAL A 170 ARG A 172 1 O ILE A 171 N MET A 135 SHEET 1 B 7 LEU A 222 ILE A 231 0 SHEET 2 B 7 GLY A 235 ARG A 244 -1 O GLU A 243 N LEU A 222 SHEET 3 B 7 ASN A 285 LEU A 290 -1 O VAL A 286 N GLY A 240 SHEET 4 B 7 ARG A 263 GLU A 271 -1 N GLU A 271 O GLY A 287 SHEET 5 B 7 GLU A 252 VAL A 256 -1 N VAL A 253 O THR A 265 SHEET 6 B 7 VAL A 303 ALA A 305 -1 O VAL A 303 N VAL A 256 SHEET 7 B 7 LEU A 222 ILE A 231 -1 N MET A 223 O LEU A 304 SHEET 1 C 2 LYS A 246 LYS A 248 0 SHEET 2 C 2 GLU A 279 ILE A 281 -1 O GLY A 280 N VAL A 247 SHEET 1 D 7 HIS A 313 ILE A 322 0 SHEET 2 D 7 ASN A 367 VAL A 378 -1 O VAL A 378 N HIS A 313 SHEET 3 D 7 THR A 347 LEU A 355 -1 N ARG A 354 O THR A 371 SHEET 4 D 7 GLN A 341 PHE A 344 -1 N PHE A 342 O VAL A 349 SHEET 5 D 7 ARG A 385 GLU A 390 -1 O ALA A 387 N TYR A 343 SHEET 6 D 7 ARG A 393 ILE A 403 -1 O ARG A 393 N GLU A 390 SHEET 7 D 7 HIS A 313 ILE A 322 -1 N GLU A 317 O LYS A 402 LINK O3' A D 9 P 2MG D 10 1555 1555 1.61 LINK O3' 2MG D 10 P C D 11 1555 1555 1.61 LINK O3' G D 15 P H2U D 16 1555 1555 1.61 LINK O3' H2U D 16 P H2U D 17 1555 1555 1.62 LINK O3' H2U D 17 P G D 18 1555 1555 1.60 LINK O3' C D 25 P M2G D 26 1555 1555 1.62 LINK O3' M2G D 26 P C D 27 1555 1555 1.61 LINK O3' A D 31 P OMC D 32 1555 1555 1.61 LINK O3' OMC D 32 P U D 33 1555 1555 1.60 LINK O3' U D 33 P OMG D 34 1555 1555 1.62 LINK O3' OMG D 34 P A D 35 1555 1555 1.62 LINK O3' A D 36 P YG D 37 1555 1555 1.64 LINK O3' YG D 37 P A D 38 1555 1555 1.61 LINK O3' A D 38 P PSU D 39 1555 1555 1.62 LINK O3' PSU D 39 P 5MC D 40 1555 1555 1.61 LINK O3' 5MC D 40 P U D 41 1555 1555 1.61 LINK O3' G D 45 P 7MG D 46 1555 1555 1.61 LINK O3' 7MG D 46 P U D 47 1555 1555 1.62 LINK O3' C D 48 P 5MC D 49 1555 1555 1.62 LINK O3' 5MC D 49 P U D 50 1555 1555 1.62 LINK O3' G D 53 P 5MU D 54 1555 1555 1.63 LINK O3' 5MU D 54 P PSU D 55 1555 1555 1.62 LINK O3' PSU D 55 P C D 56 1555 1555 1.62 LINK O3' G D 57 P 1MA D 58 1555 1555 1.61 LINK O3' 1MA D 58 P U D 59 1555 1555 1.60 LINK O3' A C 9 P 2MG C 10 1555 1555 1.63 LINK O3' 2MG C 10 P C C 11 1555 1555 1.60 LINK O3' G C 15 P H2U C 16 1555 1555 1.61 LINK O3' H2U C 16 P H2U C 17 1555 1555 1.62 LINK O3' H2U C 17 P G C 18 1555 1555 1.60 LINK O3' M2G C 26 P C C 27 1555 1555 1.60 LINK O3' A C 31 P OMC C 32 1555 1555 1.61 LINK O3' OMC C 32 P U C 33 1555 1555 1.61 LINK O3' U C 33 P OMG C 34 1555 1555 1.41 LINK O3' OMG C 34 P A C 35 1555 1555 1.59 LINK O3' A C 36 P YG C 37 1555 1555 1.18 LINK O3' YG C 37 P A C 38 1555 1555 1.61 LINK O3' A C 38 P PSU C 39 1555 1555 1.61 LINK O3' PSU C 39 P 5MC C 40 1555 1555 1.61 LINK O3' 5MC C 40 P U C 41 1555 1555 1.60 LINK O3' G C 45 P 7MG C 46 1555 1555 1.60 LINK O3' 7MG C 46 P U C 47 1555 1555 1.63 LINK O3' C C 48 P 5MC C 49 1555 1555 1.60 LINK O3' 5MC C 49 P U C 50 1555 1555 1.62 LINK O3' G C 53 P 5MU C 54 1555 1555 1.64 LINK O3' 5MU C 54 P PSU C 55 1555 1555 1.62 LINK O3' PSU C 55 P C C 56 1555 1555 1.61 LINK O3' G C 57 P 1MA C 58 1555 1555 1.59 LINK O3' 1MA C 58 P U C 59 1555 1555 1.64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000