HEADER HYDROLASE 27-AUG-02 1MJ5 TITLE LINB (HALOALKANE DEHALOGENASE) FROM SPHINGOMONAS PAUCIMOBILIS UT26 AT TITLE 2 ATOMIC RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HALOALKANE DEHALOGENASE, 1,4- TCDN CHLOROHYDROLASE; COMPND 5 EC: 3.8.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 STRAIN: UT26; SOURCE 5 GENE: LINB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAQN KEYWDS LINB, HYDROLASE, HALOALKANE DEHALOGENASE, 1, 3, 4, 6-TETRACHLORO-1, KEYWDS 2 4-CYCLOHEXADIENE DEHALOGENASE, GAMMA-HEXACHLOROCYCLOHEXANE KEYWDS 3 DEGRADATION, ALPHA/BETA-HYDROLASE, ULTRA HIGH RESOLUTION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY,J.DAMBORSKY,M.C.WILCE REVDAT 4 14-FEB-24 1MJ5 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1MJ5 1 VERSN REVDAT 2 12-JUL-05 1MJ5 1 JRNL REVDAT 1 27-AUG-03 1MJ5 0 JRNL AUTH A.J.OAKLEY,M.KLVANA,M.OTYEPKA,Y.NAGATA,M.C.WILCE,J.DAMBORSKY JRNL TITL CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB FROM JRNL TITL 2 SPHINGOMONAS PAUCIMOBILIS UT26 AT 0.95 A RESOLUTION: JRNL TITL 3 DYNAMICS OF CATALYTIC RESIDUES. JRNL REF BIOCHEMISTRY V. 43 870 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 14744129 JRNL DOI 10.1021/BI034748G REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.OAKLEY,Z.PROKOP,M.BOHAC,J.KMUNICEK,T.JEDLICKA, REMARK 1 AUTH 2 M.MONINCOVA,I.KUTA-SMATANOVA,Y.NAGATA,J.DAMBORSKY, REMARK 1 AUTH 3 M.C.J.WILCE REMARK 1 TITL SPHINGOMONAS PAUCIMOBILIS UT26: EVIDENCE FOR PRODUCT- AND REMARK 1 TITL 2 WATER-MEDIATED INHIBITION REMARK 1 REF BIOCHEMISTRY V. 41 4847 2002 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI015734I REMARK 1 REFERENCE 2 REMARK 1 AUTH J.MAREK,J.VEVODOVA,I.K.SMATANOVA,Y.NAGATA,L.A.SVENSSON, REMARK 1 AUTH 2 J.NEWMAN,M.TAKAGI,J.DAMBORSKY REMARK 1 TITL CRYSTAL STRUCTURE OF THE HALOALKANE DEHALOGENASE FROM REMARK 1 TITL 2 SPHINGOMONAS PAUCIMOBILIS UT26 REMARK 1 REF BIOCHEMISTRY V. 39 14082 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI001539C REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.112 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.112 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6763 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 134890 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 658 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 ANGLE DISTANCES (A) : 0.037 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.115 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.106 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000016949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 134890 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 22.763 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1CV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 100 MM TRIS HCL PH 8.5, REMARK 280 20% (W/V) PEG 4,000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.19500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.36000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.36000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.19500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 299 CA C O CB CG ND1 CD2 REMARK 470 HIS A 299 CE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 3 CD1 CD2 REMARK 480 GLN A 146 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD3 LYS A 6 O PRO A 7 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 123 CD GLU A 123 OE1 -0.073 REMARK 500 GLU A 281 CD GLU A 281 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 3 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 20 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 20 NH1 - CZ - NH2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR A 43 CB - CG - CD2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 57 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 87 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 122 NH1 - CZ - NH2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 147 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 147 OD1 - CG - OD2 ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 147 CB - CG - OD1 ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 148 NH1 - CZ - NH2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 180 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 GLU A 184 OE1 - CD - OE2 ANGL. DEV. = -18.8 DEGREES REMARK 500 GLU A 184 CG - CD - OE1 ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE A 240 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 GLU A 281 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 291 CD - NE - CZ ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 292 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG A 292 NH1 - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 51.74 -101.58 REMARK 500 THR A 40 -162.84 -104.40 REMARK 500 ASP A 108 -133.42 55.93 REMARK 500 GLN A 172 -53.51 -122.15 REMARK 500 ALA A 247 -75.92 -151.00 REMARK 500 ALA A 247 -76.03 -151.00 REMARK 500 ALA A 271 -95.24 -103.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3013 O REMARK 620 2 HOH A3019 O 176.7 REMARK 620 3 HOH A3029 O 90.2 92.1 REMARK 620 4 HOH A3032 O 89.4 88.4 179.1 REMARK 620 5 HOH A3038 O 91.5 91.0 87.8 91.4 REMARK 620 6 HOH A3064 O 89.7 87.8 90.0 90.8 177.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3039 O REMARK 620 2 HOH A3114 O 88.9 REMARK 620 3 HOH A3115 O 176.7 88.6 REMARK 620 4 HOH A3116 O 90.6 90.7 87.2 REMARK 620 5 HOH A3143 O 92.1 92.3 90.2 176.0 REMARK 620 6 HOH A3173 O 90.0 178.6 92.4 88.3 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3075 O REMARK 620 2 HOH A3083 O 88.8 REMARK 620 3 HOH A3086 O 89.9 88.1 REMARK 620 4 HOH A3108 O 87.3 175.2 94.6 REMARK 620 5 HOH A3118 O 176.1 93.5 87.1 90.6 REMARK 620 6 HOH A3138 O 91.7 87.9 175.7 89.4 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CV2 RELATED DB: PDB REMARK 900 FIRST DESCRIPTION OF LINB REMARK 900 RELATED ID: 1G42 RELATED DB: PDB REMARK 900 LINB COMPLEXED WITH 1,2-DICHLOROPROPANE REMARK 900 RELATED ID: 1G5F RELATED DB: PDB REMARK 900 LINB COMPLEXED WITH 1,2-DICHLOROETHANE REMARK 900 RELATED ID: 1G4H RELATED DB: PDB REMARK 900 LINB COMPLEXED WITH BUTAN-1-OL DBREF 1MJ5 A 1 296 UNP P51698 LINB_PSEPA 1 296 SEQADV 1MJ5 HIS A 297 UNP P51698 EXPRESSION TAG SEQADV 1MJ5 HIS A 298 UNP P51698 EXPRESSION TAG SEQADV 1MJ5 HIS A 299 UNP P51698 EXPRESSION TAG SEQADV 1MJ5 HIS A 300 UNP P51698 EXPRESSION TAG SEQADV 1MJ5 HIS A 301 UNP P51698 EXPRESSION TAG SEQADV 1MJ5 HIS A 302 UNP P51698 EXPRESSION TAG SEQRES 1 A 302 MET SER LEU GLY ALA LYS PRO PHE GLY GLU LYS LYS PHE SEQRES 2 A 302 ILE GLU ILE LYS GLY ARG ARG MET ALA TYR ILE ASP GLU SEQRES 3 A 302 GLY THR GLY ASP PRO ILE LEU PHE GLN HIS GLY ASN PRO SEQRES 4 A 302 THR SER SER TYR LEU TRP ARG ASN ILE MET PRO HIS CYS SEQRES 5 A 302 ALA GLY LEU GLY ARG LEU ILE ALA CYS ASP LEU ILE GLY SEQRES 6 A 302 MET GLY ASP SER ASP LYS LEU ASP PRO SER GLY PRO GLU SEQRES 7 A 302 ARG TYR ALA TYR ALA GLU HIS ARG ASP TYR LEU ASP ALA SEQRES 8 A 302 LEU TRP GLU ALA LEU ASP LEU GLY ASP ARG VAL VAL LEU SEQRES 9 A 302 VAL VAL HIS ASP TRP GLY SER ALA LEU GLY PHE ASP TRP SEQRES 10 A 302 ALA ARG ARG HIS ARG GLU ARG VAL GLN GLY ILE ALA TYR SEQRES 11 A 302 MET GLU ALA ILE ALA MET PRO ILE GLU TRP ALA ASP PHE SEQRES 12 A 302 PRO GLU GLN ASP ARG ASP LEU PHE GLN ALA PHE ARG SER SEQRES 13 A 302 GLN ALA GLY GLU GLU LEU VAL LEU GLN ASP ASN VAL PHE SEQRES 14 A 302 VAL GLU GLN VAL LEU PRO GLY LEU ILE LEU ARG PRO LEU SEQRES 15 A 302 SER GLU ALA GLU MET ALA ALA TYR ARG GLU PRO PHE LEU SEQRES 16 A 302 ALA ALA GLY GLU ALA ARG ARG PRO THR LEU SER TRP PRO SEQRES 17 A 302 ARG GLN ILE PRO ILE ALA GLY THR PRO ALA ASP VAL VAL SEQRES 18 A 302 ALA ILE ALA ARG ASP TYR ALA GLY TRP LEU SER GLU SER SEQRES 19 A 302 PRO ILE PRO LYS LEU PHE ILE ASN ALA GLU PRO GLY ALA SEQRES 20 A 302 LEU THR THR GLY ARG MET ARG ASP PHE CYS ARG THR TRP SEQRES 21 A 302 PRO ASN GLN THR GLU ILE THR VAL ALA GLY ALA HIS PHE SEQRES 22 A 302 ILE GLN GLU ASP SER PRO ASP GLU ILE GLY ALA ALA ILE SEQRES 23 A 302 ALA ALA PHE VAL ARG ARG LEU ARG PRO ALA HIS HIS HIS SEQRES 24 A 302 HIS HIS HIS HET MG A2001 1 HET MG A2002 1 HET MG A2003 1 HET CL A2004 1 HET CL A2005 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 MG 3(MG 2+) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *658(H2 O) HELIX 1 1 SER A 41 ARG A 46 5 6 HELIX 2 2 ILE A 48 ALA A 53 5 6 HELIX 3 3 ALA A 81 LEU A 96 1 16 HELIX 4 4 ASP A 108 HIS A 121 1 14 HELIX 5 5 GLU A 139 PHE A 143 5 5 HELIX 6 6 PRO A 144 GLN A 146 5 3 HELIX 7 7 ASP A 147 SER A 156 1 10 HELIX 8 8 ALA A 158 LEU A 164 1 7 HELIX 9 9 ASN A 167 GLN A 172 1 6 HELIX 10 10 GLN A 172 LEU A 177 1 6 HELIX 11 11 SER A 183 GLU A 192 1 10 HELIX 12 12 PRO A 193 LEU A 195 5 3 HELIX 13 13 GLY A 198 ALA A 200 5 3 HELIX 14 14 ARG A 201 TRP A 207 1 7 HELIX 15 15 PRO A 208 ILE A 211 5 4 HELIX 16 16 PRO A 217 SER A 232 1 16 HELIX 17 17 THR A 250 ARG A 258 1 9 HELIX 18 18 PHE A 273 ASP A 277 5 5 HELIX 19 19 SER A 278 ARG A 294 1 17 SHEET 1 A 8 LYS A 12 ILE A 16 0 SHEET 2 A 8 ARG A 19 GLU A 26 -1 O TYR A 23 N LYS A 12 SHEET 3 A 8 ARG A 57 CYS A 61 -1 O LEU A 58 N GLU A 26 SHEET 4 A 8 PRO A 31 GLN A 35 1 N PHE A 34 O ILE A 59 SHEET 5 A 8 VAL A 102 HIS A 107 1 O VAL A 105 N LEU A 33 SHEET 6 A 8 VAL A 125 MET A 131 1 O ALA A 129 N LEU A 104 SHEET 7 A 8 LYS A 238 PRO A 245 1 O ILE A 241 N TYR A 130 SHEET 8 A 8 GLN A 263 GLY A 270 1 O THR A 264 N PHE A 240 LINK MG MG A2001 O HOH A3013 1555 1555 2.02 LINK MG MG A2001 O HOH A3019 1555 4565 2.07 LINK MG MG A2001 O HOH A3029 1555 4565 2.08 LINK MG MG A2001 O HOH A3032 1555 1555 2.07 LINK MG MG A2001 O HOH A3038 1555 4565 2.08 LINK MG MG A2001 O HOH A3064 1555 4565 2.07 LINK MG MG A2002 O HOH A3039 1555 1555 2.06 LINK MG MG A2002 O HOH A3114 1555 1555 2.07 LINK MG MG A2002 O HOH A3115 1555 3555 2.11 LINK MG MG A2002 O HOH A3116 1555 3555 2.07 LINK MG MG A2002 O HOH A3143 1555 1555 2.06 LINK MG MG A2002 O HOH A3173 1555 3555 2.06 LINK MG MG A2003 O HOH A3075 1555 1455 2.08 LINK MG MG A2003 O HOH A3083 1555 1555 2.02 LINK MG MG A2003 O HOH A3086 1555 1455 2.08 LINK MG MG A2003 O HOH A3108 1555 1455 2.07 LINK MG MG A2003 O HOH A3118 1555 1455 2.08 LINK MG MG A2003 O HOH A3138 1555 1455 2.09 CISPEP 1 ASN A 38 PRO A 39 0 -13.40 CISPEP 2 ASP A 73 PRO A 74 0 17.12 CISPEP 3 THR A 216 PRO A 217 0 -11.99 CISPEP 4 THR A 216 PRO A 217 0 -3.73 CISPEP 5 GLU A 244 PRO A 245 0 5.79 CISPEP 6 GLU A 244 PRO A 245 0 -0.99 SITE 1 AC1 6 HOH A3013 HOH A3019 HOH A3029 HOH A3032 SITE 2 AC1 6 HOH A3038 HOH A3064 SITE 1 AC2 6 HOH A3039 HOH A3114 HOH A3115 HOH A3116 SITE 2 AC2 6 HOH A3143 HOH A3173 SITE 1 AC3 6 HOH A3075 HOH A3083 HOH A3086 HOH A3108 SITE 2 AC3 6 HOH A3118 HOH A3138 SITE 1 AC4 4 ASN A 38 TRP A 109 PHE A 169 PRO A 208 SITE 1 AC5 4 THR A 216 ALA A 218 HOH A3216 HOH A3436 CRYST1 46.390 68.380 80.720 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021556 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012389 0.00000