data_1MJP # _entry.id 1MJP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MJP pdb_00001mjp 10.2210/pdb1mjp/pdb RCSB PD0247 ? ? WWPDB D_1000175029 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MJ2 . unspecified PDB 1MJM . unspecified PDB 1MJO . unspecified PDB 1MJQ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MJP _pdbx_database_status.recvd_initial_deposition_date 1998-01-29 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Garvie, C.W.' 1 'Phillips, S.E.V.' 2 # _citation.id primary _citation.title 'Direct and indirect readout in mutant Met repressor-operator complexes.' _citation.journal_abbrev 'Structure Fold.Des.' _citation.journal_volume 8 _citation.page_first 905 _citation.page_last 914 _citation.year 2000 _citation.journal_id_ASTM FODEFH _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 1263 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10986458 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(00)00182-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Garvie, C.W.' 1 ? primary 'Phillips, S.E.' 2 ? # _cell.entry_id 1MJP _cell.length_a 118.390 _cell.length_b 118.390 _cell.length_c 83.710 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MJP _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'CONSENSUS OPERATOR DUPLEX' 3035.003 1 ? ? ? ? 2 polymer syn 'CONSENSUS OPERATOR DUPLEX' 2739.823 1 ? ? ? ? 3 polymer man 'METHIONINE REPRESSOR' 12028.607 2 ? Q44K ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DA)(DG)(DA)(DC)(DG)(DT)(DC)(DT)' TTAGACGTCT C ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DA)(DC)(DG)(DT)(DC)(DT)(DA)' AGACGTCTA D ? 3 'polypeptide(L)' no no ;AEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRKVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKER SDEIPEAAKEIMREMGINPETWEY ; ;AEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRKVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKER SDEIPEAAKEIMREMGINPETWEY ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 2 1 DA n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DG n 2 6 DT n 2 7 DC n 2 8 DT n 2 9 DA n 3 1 ALA n 3 2 GLU n 3 3 TRP n 3 4 SER n 3 5 GLY n 3 6 GLU n 3 7 TYR n 3 8 ILE n 3 9 SER n 3 10 PRO n 3 11 TYR n 3 12 ALA n 3 13 GLU n 3 14 HIS n 3 15 GLY n 3 16 LYS n 3 17 LYS n 3 18 SER n 3 19 GLU n 3 20 GLN n 3 21 VAL n 3 22 LYS n 3 23 LYS n 3 24 ILE n 3 25 THR n 3 26 VAL n 3 27 SER n 3 28 ILE n 3 29 PRO n 3 30 LEU n 3 31 LYS n 3 32 VAL n 3 33 LEU n 3 34 LYS n 3 35 ILE n 3 36 LEU n 3 37 THR n 3 38 ASP n 3 39 GLU n 3 40 ARG n 3 41 THR n 3 42 ARG n 3 43 ARG n 3 44 LYS n 3 45 VAL n 3 46 ASN n 3 47 ASN n 3 48 LEU n 3 49 ARG n 3 50 HIS n 3 51 ALA n 3 52 THR n 3 53 ASN n 3 54 SER n 3 55 GLU n 3 56 LEU n 3 57 LEU n 3 58 CYS n 3 59 GLU n 3 60 ALA n 3 61 PHE n 3 62 LEU n 3 63 HIS n 3 64 ALA n 3 65 PHE n 3 66 THR n 3 67 GLY n 3 68 GLN n 3 69 PRO n 3 70 LEU n 3 71 PRO n 3 72 ASP n 3 73 ASP n 3 74 ALA n 3 75 ASP n 3 76 LEU n 3 77 ARG n 3 78 LYS n 3 79 GLU n 3 80 ARG n 3 81 SER n 3 82 ASP n 3 83 GLU n 3 84 ILE n 3 85 PRO n 3 86 GLU n 3 87 ALA n 3 88 ALA n 3 89 LYS n 3 90 GLU n 3 91 ILE n 3 92 MET n 3 93 ARG n 3 94 GLU n 3 95 MET n 3 96 GLY n 3 97 ILE n 3 98 ASN n 3 99 PRO n 3 100 GLU n 3 101 THR n 3 102 TRP n 3 103 GLU n 3 104 TYR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene METJ _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP METJ_ECOLI P0A8U6 3 1 ? ? 2 PDB 1MJP 1MJP 1 ? ? ? 3 PDB 1MJP 1MJP 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MJP A 1 ? 104 ? P0A8U6 1 ? 104 ? 1 104 2 1 1MJP B 1 ? 104 ? P0A8U6 1 ? 104 ? 1 104 3 2 1MJP C 1 ? 10 ? 1MJP 1 ? 10 ? 1 10 4 3 1MJP D 1 ? 9 ? 1MJP 1 ? 9 ? 1 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1MJP LYS A 44 ? UNP P0A8U6 GLN 44 'engineered mutation' 44 1 2 1MJP LYS B 44 ? UNP P0A8U6 GLN 44 'engineered mutation' 44 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1MJP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_percent_sol 56.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PROTEIN (10MG/ML) + DNA (4MG/ML) WAS CRYSTALLISED FROM 40% MPD, 100MM SODIUM CACODYLATE BUFFER, PH 7.0.' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 PROTEIN ? ? ? 1 2 1 DNA ? ? ? 1 3 1 MPD ? ? ? 1 4 1 'SODIUM CACODYLATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1997-06 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1MJP _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 3.4 _reflns.number_obs 19851 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.0850000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.5 _reflns.B_iso_Wilson_estimate 9.8 _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.40 _reflns_shell.d_res_low 3.58 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.0850000 _reflns_shell.pdbx_Rsym_value 0.2310000 _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MJP _refine.ls_number_reflns_obs 4864 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00100 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 3.40 _refine.ls_percent_reflns_obs 95.2 _refine.ls_R_factor_obs 0.2260000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2260000 _refine.ls_R_factor_R_free 0.3090000 _refine.ls_R_factor_R_free_error 0.014 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 480 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 72.8 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB ENTRY 1CMA' _refine.pdbx_method_to_determine_struct 'DIFFERENCE FOURIER METHODS' _refine.pdbx_isotropic_thermal_model GROUP _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1MJP _refine_analyze.Luzzati_coordinate_error_obs 0.42 _refine_analyze.Luzzati_sigma_a_obs 0.46 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.56 _refine_analyze.Luzzati_sigma_a_free 0.71 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1690 _refine_hist.pdbx_number_atoms_nucleic_acid 382 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2072 _refine_hist.d_res_high 3.40 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.3 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.11 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.d_res_high 3.40 _refine_ls_shell.d_res_low 3.48 _refine_ls_shell.number_reflns_R_work 279 _refine_ls_shell.R_factor_R_work 0.3130000 _refine_ls_shell.percent_reflns_obs 94.2 _refine_ls_shell.R_factor_R_free 0.3470000 _refine_ls_shell.R_factor_R_free_error 0.053 _refine_ls_shell.percent_reflns_R_free 13.4 _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 PARAMETER.ELEMENTS TOPOLOGY.ELEMENTS 'X-RAY DIFFRACTION' 4 PARAMETER.ELEMENTS TOPH19.SOL 'X-RAY DIFFRACTION' # _struct.entry_id 1MJP _struct.title 'METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MJP _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;COMPLEX (TRANSCRIPTION REGULATION-DNA), METJ, METHIONINE REPRESSOR, SHEET-HELIX-HELIX, SAM, S-ADENOSYL METHIONINE, TRANSCRIPTION-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA LEU C 30 ? VAL C 45 ? LEU A 30 VAL A 45 1 ? 16 HELX_P HELX_P2 AB ASN C 53 ? THR C 66 ? ASN A 53 THR A 66 1 ? 14 HELX_P HELX_P3 AC GLU C 86 ? GLU C 94 ? GLU A 86 GLU A 94 1 ? 9 HELX_P HELX_P4 BA LEU D 30 ? VAL D 45 ? LEU B 30 VAL B 45 1 ? 16 HELX_P HELX_P5 BB ASN D 53 ? THR D 66 ? ASN B 53 THR B 66 1 ? 14 HELX_P HELX_P6 BC GLU D 86 ? MET D 95 ? GLU B 86 MET B 95 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 2 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 2 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? C DA 5 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? C DA 5 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 7 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 7 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 7 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? C DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? C DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 1 N1 ? ? C DT 10 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 1 N6 ? ? C DT 10 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details SA ? 1 ? SB ? 1 ? # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id SA 1 VAL C 21 ? ILE C 28 ? VAL A 21 ILE A 28 SB 1 VAL D 21 ? ILE D 28 ? VAL B 21 ILE B 28 # _database_PDB_matrix.entry_id 1MJP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MJP _atom_sites.fract_transf_matrix[1][1] 0.008447 _atom_sites.fract_transf_matrix[1][2] 0.004877 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011946 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T C . n A 1 2 DT 2 2 2 DT T C . n A 1 3 DA 3 3 3 DA A C . n A 1 4 DG 4 4 4 DG G C . n A 1 5 DA 5 5 5 DA A C . n A 1 6 DC 6 6 6 DC C C . n A 1 7 DG 7 7 7 DG G C . n A 1 8 DT 8 8 8 DT T C . n A 1 9 DC 9 9 9 DC C C . n A 1 10 DT 10 10 10 DT T C . n B 2 1 DA 1 1 1 DA A D . n B 2 2 DG 2 2 2 DG G D . n B 2 3 DA 3 3 3 DA A D . n B 2 4 DC 4 4 4 DC C D . n B 2 5 DG 5 5 5 DG G D . n B 2 6 DT 6 6 6 DT T D . n B 2 7 DC 7 7 7 DC C D . n B 2 8 DT 8 8 8 DT T D . n B 2 9 DA 9 9 9 DA A D . n C 3 1 ALA 1 1 1 ALA ALA A . n C 3 2 GLU 2 2 2 GLU GLU A . n C 3 3 TRP 3 3 3 TRP TRP A . n C 3 4 SER 4 4 4 SER SER A . n C 3 5 GLY 5 5 5 GLY GLY A . n C 3 6 GLU 6 6 6 GLU GLU A . n C 3 7 TYR 7 7 7 TYR TYR A . n C 3 8 ILE 8 8 8 ILE ILE A . n C 3 9 SER 9 9 9 SER SER A . n C 3 10 PRO 10 10 10 PRO PRO A . n C 3 11 TYR 11 11 11 TYR TYR A . n C 3 12 ALA 12 12 12 ALA ALA A . n C 3 13 GLU 13 13 13 GLU GLU A . n C 3 14 HIS 14 14 14 HIS HIS A . n C 3 15 GLY 15 15 15 GLY GLY A . n C 3 16 LYS 16 16 16 LYS LYS A . n C 3 17 LYS 17 17 17 LYS LYS A . n C 3 18 SER 18 18 18 SER SER A . n C 3 19 GLU 19 19 19 GLU GLU A . n C 3 20 GLN 20 20 20 GLN GLN A . n C 3 21 VAL 21 21 21 VAL VAL A . n C 3 22 LYS 22 22 22 LYS LYS A . n C 3 23 LYS 23 23 23 LYS LYS A . n C 3 24 ILE 24 24 24 ILE ILE A . n C 3 25 THR 25 25 25 THR THR A . n C 3 26 VAL 26 26 26 VAL VAL A . n C 3 27 SER 27 27 27 SER SER A . n C 3 28 ILE 28 28 28 ILE ILE A . n C 3 29 PRO 29 29 29 PRO PRO A . n C 3 30 LEU 30 30 30 LEU LEU A . n C 3 31 LYS 31 31 31 LYS LYS A . n C 3 32 VAL 32 32 32 VAL VAL A . n C 3 33 LEU 33 33 33 LEU LEU A . n C 3 34 LYS 34 34 34 LYS LYS A . n C 3 35 ILE 35 35 35 ILE ILE A . n C 3 36 LEU 36 36 36 LEU LEU A . n C 3 37 THR 37 37 37 THR THR A . n C 3 38 ASP 38 38 38 ASP ASP A . n C 3 39 GLU 39 39 39 GLU GLU A . n C 3 40 ARG 40 40 40 ARG ARG A . n C 3 41 THR 41 41 41 THR THR A . n C 3 42 ARG 42 42 42 ARG ARG A . n C 3 43 ARG 43 43 43 ARG ARG A . n C 3 44 LYS 44 44 44 LYS LYS A . n C 3 45 VAL 45 45 45 VAL VAL A . n C 3 46 ASN 46 46 46 ASN ASN A . n C 3 47 ASN 47 47 47 ASN ASN A . n C 3 48 LEU 48 48 48 LEU LEU A . n C 3 49 ARG 49 49 49 ARG ARG A . n C 3 50 HIS 50 50 50 HIS HIS A . n C 3 51 ALA 51 51 51 ALA ALA A . n C 3 52 THR 52 52 52 THR THR A . n C 3 53 ASN 53 53 53 ASN ASN A . n C 3 54 SER 54 54 54 SER SER A . n C 3 55 GLU 55 55 55 GLU GLU A . n C 3 56 LEU 56 56 56 LEU LEU A . n C 3 57 LEU 57 57 57 LEU LEU A . n C 3 58 CYS 58 58 58 CYS CYS A . n C 3 59 GLU 59 59 59 GLU GLU A . n C 3 60 ALA 60 60 60 ALA ALA A . n C 3 61 PHE 61 61 61 PHE PHE A . n C 3 62 LEU 62 62 62 LEU LEU A . n C 3 63 HIS 63 63 63 HIS HIS A . n C 3 64 ALA 64 64 64 ALA ALA A . n C 3 65 PHE 65 65 65 PHE PHE A . n C 3 66 THR 66 66 66 THR THR A . n C 3 67 GLY 67 67 67 GLY GLY A . n C 3 68 GLN 68 68 68 GLN GLN A . n C 3 69 PRO 69 69 69 PRO PRO A . n C 3 70 LEU 70 70 70 LEU LEU A . n C 3 71 PRO 71 71 71 PRO PRO A . n C 3 72 ASP 72 72 72 ASP ASP A . n C 3 73 ASP 73 73 73 ASP ASP A . n C 3 74 ALA 74 74 74 ALA ALA A . n C 3 75 ASP 75 75 75 ASP ASP A . n C 3 76 LEU 76 76 76 LEU LEU A . n C 3 77 ARG 77 77 77 ARG ARG A . n C 3 78 LYS 78 78 78 LYS LYS A . n C 3 79 GLU 79 79 79 GLU GLU A . n C 3 80 ARG 80 80 80 ARG ARG A . n C 3 81 SER 81 81 81 SER SER A . n C 3 82 ASP 82 82 82 ASP ASP A . n C 3 83 GLU 83 83 83 GLU GLU A . n C 3 84 ILE 84 84 84 ILE ILE A . n C 3 85 PRO 85 85 85 PRO PRO A . n C 3 86 GLU 86 86 86 GLU GLU A . n C 3 87 ALA 87 87 87 ALA ALA A . n C 3 88 ALA 88 88 88 ALA ALA A . n C 3 89 LYS 89 89 89 LYS LYS A . n C 3 90 GLU 90 90 90 GLU GLU A . n C 3 91 ILE 91 91 91 ILE ILE A . n C 3 92 MET 92 92 92 MET MET A . n C 3 93 ARG 93 93 93 ARG ARG A . n C 3 94 GLU 94 94 94 GLU GLU A . n C 3 95 MET 95 95 95 MET MET A . n C 3 96 GLY 96 96 96 GLY GLY A . n C 3 97 ILE 97 97 97 ILE ILE A . n C 3 98 ASN 98 98 98 ASN ASN A . n C 3 99 PRO 99 99 99 PRO PRO A . n C 3 100 GLU 100 100 100 GLU GLU A . n C 3 101 THR 101 101 101 THR THR A . n C 3 102 TRP 102 102 102 TRP TRP A . n C 3 103 GLU 103 103 103 GLU GLU A . n C 3 104 TYR 104 104 104 TYR TYR A . n D 3 1 ALA 1 1 1 ALA ALA B . n D 3 2 GLU 2 2 2 GLU GLU B . n D 3 3 TRP 3 3 3 TRP TRP B . n D 3 4 SER 4 4 4 SER SER B . n D 3 5 GLY 5 5 5 GLY GLY B . n D 3 6 GLU 6 6 6 GLU GLU B . n D 3 7 TYR 7 7 7 TYR TYR B . n D 3 8 ILE 8 8 8 ILE ILE B . n D 3 9 SER 9 9 9 SER SER B . n D 3 10 PRO 10 10 10 PRO PRO B . n D 3 11 TYR 11 11 11 TYR TYR B . n D 3 12 ALA 12 12 12 ALA ALA B . n D 3 13 GLU 13 13 13 GLU GLU B . n D 3 14 HIS 14 14 14 HIS HIS B . n D 3 15 GLY 15 15 15 GLY GLY B . n D 3 16 LYS 16 16 16 LYS LYS B . n D 3 17 LYS 17 17 17 LYS LYS B . n D 3 18 SER 18 18 18 SER SER B . n D 3 19 GLU 19 19 19 GLU GLU B . n D 3 20 GLN 20 20 20 GLN GLN B . n D 3 21 VAL 21 21 21 VAL VAL B . n D 3 22 LYS 22 22 22 LYS LYS B . n D 3 23 LYS 23 23 23 LYS LYS B . n D 3 24 ILE 24 24 24 ILE ILE B . n D 3 25 THR 25 25 25 THR THR B . n D 3 26 VAL 26 26 26 VAL VAL B . n D 3 27 SER 27 27 27 SER SER B . n D 3 28 ILE 28 28 28 ILE ILE B . n D 3 29 PRO 29 29 29 PRO PRO B . n D 3 30 LEU 30 30 30 LEU LEU B . n D 3 31 LYS 31 31 31 LYS LYS B . n D 3 32 VAL 32 32 32 VAL VAL B . n D 3 33 LEU 33 33 33 LEU LEU B . n D 3 34 LYS 34 34 34 LYS LYS B . n D 3 35 ILE 35 35 35 ILE ILE B . n D 3 36 LEU 36 36 36 LEU LEU B . n D 3 37 THR 37 37 37 THR THR B . n D 3 38 ASP 38 38 38 ASP ASP B . n D 3 39 GLU 39 39 39 GLU GLU B . n D 3 40 ARG 40 40 40 ARG ARG B . n D 3 41 THR 41 41 41 THR THR B . n D 3 42 ARG 42 42 42 ARG ARG B . n D 3 43 ARG 43 43 43 ARG ARG B . n D 3 44 LYS 44 44 44 LYS LYS B . n D 3 45 VAL 45 45 45 VAL VAL B . n D 3 46 ASN 46 46 46 ASN ASN B . n D 3 47 ASN 47 47 47 ASN ASN B . n D 3 48 LEU 48 48 48 LEU LEU B . n D 3 49 ARG 49 49 49 ARG ARG B . n D 3 50 HIS 50 50 50 HIS HIS B . n D 3 51 ALA 51 51 51 ALA ALA B . n D 3 52 THR 52 52 52 THR THR B . n D 3 53 ASN 53 53 53 ASN ASN B . n D 3 54 SER 54 54 54 SER SER B . n D 3 55 GLU 55 55 55 GLU GLU B . n D 3 56 LEU 56 56 56 LEU LEU B . n D 3 57 LEU 57 57 57 LEU LEU B . n D 3 58 CYS 58 58 58 CYS CYS B . n D 3 59 GLU 59 59 59 GLU GLU B . n D 3 60 ALA 60 60 60 ALA ALA B . n D 3 61 PHE 61 61 61 PHE PHE B . n D 3 62 LEU 62 62 62 LEU LEU B . n D 3 63 HIS 63 63 63 HIS HIS B . n D 3 64 ALA 64 64 64 ALA ALA B . n D 3 65 PHE 65 65 65 PHE PHE B . n D 3 66 THR 66 66 66 THR THR B . n D 3 67 GLY 67 67 67 GLY GLY B . n D 3 68 GLN 68 68 68 GLN GLN B . n D 3 69 PRO 69 69 69 PRO PRO B . n D 3 70 LEU 70 70 70 LEU LEU B . n D 3 71 PRO 71 71 71 PRO PRO B . n D 3 72 ASP 72 72 72 ASP ASP B . n D 3 73 ASP 73 73 73 ASP ASP B . n D 3 74 ALA 74 74 74 ALA ALA B . n D 3 75 ASP 75 75 75 ASP ASP B . n D 3 76 LEU 76 76 76 LEU LEU B . n D 3 77 ARG 77 77 77 ARG ARG B . n D 3 78 LYS 78 78 78 LYS LYS B . n D 3 79 GLU 79 79 79 GLU GLU B . n D 3 80 ARG 80 80 80 ARG ARG B . n D 3 81 SER 81 81 81 SER SER B . n D 3 82 ASP 82 82 82 ASP ASP B . n D 3 83 GLU 83 83 83 GLU GLU B . n D 3 84 ILE 84 84 84 ILE ILE B . n D 3 85 PRO 85 85 85 PRO PRO B . n D 3 86 GLU 86 86 86 GLU GLU B . n D 3 87 ALA 87 87 87 ALA ALA B . n D 3 88 ALA 88 88 88 ALA ALA B . n D 3 89 LYS 89 89 89 LYS LYS B . n D 3 90 GLU 90 90 90 GLU GLU B . n D 3 91 ILE 91 91 91 ILE ILE B . n D 3 92 MET 92 92 92 MET MET B . n D 3 93 ARG 93 93 93 ARG ARG B . n D 3 94 GLU 94 94 94 GLU GLU B . n D 3 95 MET 95 95 95 MET MET B . n D 3 96 GLY 96 96 96 GLY GLY B . n D 3 97 ILE 97 97 97 ILE ILE B . n D 3 98 ASN 98 98 98 ASN ASN B . n D 3 99 PRO 99 99 99 PRO PRO B . n D 3 100 GLU 100 100 100 GLU GLU B . n D 3 101 THR 101 101 101 THR THR B . n D 3 102 TRP 102 102 102 TRP TRP B . n D 3 103 GLU 103 103 103 GLU GLU B . n D 3 104 TYR 104 104 104 TYR TYR B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-08-02 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-14 5 'Structure model' 1 4 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Database references' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' struct_ref_seq_dif 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_struct_ref_seq_dif.details' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CCP4 'model building' . ? 1 X-PLOR refinement 3.860 ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' . ? 4 CCP4 phasing . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O3'" _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DT _pdbx_validate_symm_contact.auth_seq_id_1 10 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O5'" _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DA _pdbx_validate_symm_contact.auth_seq_id_2 1 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 12_565 _pdbx_validate_symm_contact.dist 1.87 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 44 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 NZ _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 44 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.723 _pdbx_validate_rmsd_bond.bond_target_value 1.486 _pdbx_validate_rmsd_bond.bond_deviation 0.237 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C DT 2 ? ? "C2'" C DT 2 ? ? "C1'" C DT 2 ? ? 96.79 102.40 -5.61 0.80 N 2 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? N1 C DT 2 ? ? 110.12 108.30 1.82 0.30 N 3 1 NE A ARG 43 ? ? CZ A ARG 43 ? ? NH2 A ARG 43 ? ? 123.50 120.30 3.20 0.50 N 4 1 NE B ARG 43 ? ? CZ B ARG 43 ? ? NH2 B ARG 43 ? ? 123.61 120.30 3.31 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 36 ? ? -58.70 -73.21 2 1 ASN A 47 ? ? 25.45 70.20 3 1 HIS A 50 ? ? 65.86 78.08 4 1 CYS A 58 ? ? -39.54 -38.92 5 1 PHE A 61 ? ? -39.59 -88.14 6 1 LEU A 62 ? ? -20.56 -56.31 7 1 HIS A 63 ? ? -54.76 -73.96 8 1 GLN A 68 ? ? -20.43 123.45 9 1 SER A 81 ? ? -44.76 -176.01 10 1 GLU A 83 ? ? -152.23 -156.08 11 1 TRP A 102 ? ? -42.05 101.47 12 1 GLU B 2 ? ? 162.88 -33.14 13 1 PRO B 10 ? ? -79.52 22.07 14 1 LYS B 34 ? ? -38.20 -76.99 15 1 VAL B 45 ? ? -43.99 -70.13 16 1 ASN B 46 ? ? -63.79 13.43 17 1 ASN B 47 ? ? 39.89 70.10 18 1 ALA B 51 ? ? -105.99 62.45 19 1 LEU B 56 ? ? -52.43 -76.52 20 1 PHE B 61 ? ? -50.95 -77.65 21 1 ASP B 73 ? ? -27.40 -49.10 22 1 GLU B 90 ? ? -49.89 -81.71 23 1 MET B 95 ? ? -91.62 39.82 24 1 TRP B 102 ? ? -65.24 99.47 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DT _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 2 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.078 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 44 ? CE ? C LYS 44 CE 2 1 Y 0 A LYS 44 ? NZ ? C LYS 44 NZ # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MJP 'double helix' 1MJP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 9 1_555 -0.474 -0.003 0.380 -12.936 -12.313 -4.359 1 C_DT2:DA9_D C 2 ? D 9 ? 20 1 1 A DA 3 1_555 B DT 8 1_555 -0.371 -0.065 0.616 -2.552 7.980 9.047 2 C_DA3:DT8_D C 3 ? D 8 ? 20 1 1 A DG 4 1_555 B DC 7 1_555 0.207 -0.235 -0.031 1.231 -1.188 -4.133 3 C_DG4:DC7_D C 4 ? D 7 ? 19 1 1 A DA 5 1_555 B DT 6 1_555 -0.238 -0.235 0.263 2.416 -3.004 -6.925 4 C_DA5:DT6_D C 5 ? D 6 ? 20 1 1 A DC 6 1_555 B DG 5 1_555 1.077 -0.508 0.347 -5.718 -4.494 -6.902 5 C_DC6:DG5_D C 6 ? D 5 ? 19 1 1 A DG 7 1_555 B DC 4 1_555 -0.820 -0.392 0.415 3.307 -0.203 -7.553 6 C_DG7:DC4_D C 7 ? D 4 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.639 -0.325 0.117 -4.261 -7.514 -5.833 7 C_DT8:DA3_D C 8 ? D 3 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.188 -0.309 -0.161 2.845 -6.948 -8.576 8 C_DC9:DG2_D C 9 ? D 2 ? 19 1 1 A DT 10 1_555 B DA 1 1_555 -0.949 -0.293 0.272 3.995 -5.787 0.373 9 C_DT10:DA1_D C 10 ? D 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 9 1_555 A DA 3 1_555 B DT 8 1_555 0.162 0.543 3.161 -7.997 4.956 41.820 0.262 -0.998 3.121 6.839 11.035 42.819 1 CC_DT2DA3:DT8DA9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 A DA 3 1_555 B DT 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.480 -0.698 3.274 4.460 4.438 26.658 -2.544 2.089 3.002 9.457 -9.505 27.377 2 CC_DA3DG4:DC7DT8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DA 5 1_555 B DT 6 1_555 -1.001 -0.828 3.186 -9.406 9.747 32.462 -2.808 0.273 2.990 16.564 15.986 35.104 3 CC_DG4DA5:DT6DC7_DD C 4 ? D 7 ? C 5 ? D 6 ? 1 A DA 5 1_555 B DT 6 1_555 A DC 6 1_555 B DG 5 1_555 -0.300 -0.820 3.529 -2.125 1.188 40.763 -1.315 0.178 3.515 1.704 3.048 40.832 4 CC_DA5DC6:DG5DT6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 A DC 6 1_555 B DG 5 1_555 A DG 7 1_555 B DC 4 1_555 -0.017 -0.015 3.202 0.643 -2.780 24.302 0.811 0.235 3.182 -6.575 -1.520 24.467 5 CC_DC6DG7:DC4DG5_DD C 6 ? D 5 ? C 7 ? D 4 ? 1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 0.019 -0.792 3.616 1.158 8.151 30.832 -3.038 0.193 3.303 14.998 -2.132 31.886 6 CC_DG7DT8:DA3DC4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 0.364 -0.100 3.098 3.501 -1.128 42.825 -0.031 -0.166 3.118 -1.541 -4.784 42.976 7 CC_DT8DC9:DG2DA3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 A DC 9 1_555 B DG 2 1_555 A DT 10 1_555 B DA 1 1_555 -0.017 -1.137 3.374 -3.647 3.070 22.537 -3.936 -1.250 3.156 7.744 9.199 23.030 8 CC_DC9DT10:DA1DG2_DD C 9 ? D 2 ? C 10 ? D 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1CMA _pdbx_initial_refinement_model.details 'PDB ENTRY 1CMA' #