HEADER HEPARIN-BINDING GROWTH FACTOR 16-MAR-99 1MKN TITLE N-TERMINAL HALF OF MIDKINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (MIDKINE); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL HALF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THIS PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN). KEYWDS HEPARIN-BINDING GROWTH FACTOR EXPDTA SOLUTION NMR AUTHOR W.IWASAKI,K.NAGATA,H.HATANAKA,K.OGURA,T.INUI,T.KIMURA,T.MURAMATSU, AUTHOR 2 K.YOSHIDA,M.TASUMI,F.INAGAKI REVDAT 6 27-DEC-23 1MKN 1 REMARK REVDAT 5 23-FEB-22 1MKN 1 REMARK REVDAT 4 24-FEB-09 1MKN 1 VERSN REVDAT 3 01-APR-03 1MKN 1 JRNL REVDAT 2 21-APR-99 1MKN 1 REMARK REVDAT 1 23-MAR-99 1MKN 0 JRNL AUTH W.IWASAKI,K.NAGATA,H.HATANAKA,T.INUI,T.KIMURA,T.MURAMATSU, JRNL AUTH 2 K.YOSHIDA,M.TASUMI,F.INAGAKI JRNL TITL SOLUTION STRUCTURE OF MIDKINE, A NEW HEPARIN-BINDING GROWTH JRNL TITL 2 FACTOR. JRNL REF EMBO J. V. 16 6936 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9384573 JRNL DOI 10.1093/EMBOJ/16.23.6936 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000661. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS 600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MEAN STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 46.41 -93.65 REMARK 500 LYS A 5 90.98 -47.35 REMARK 500 LYS A 8 151.86 57.03 REMARK 500 PRO A 11 -90.89 -78.25 REMARK 500 GLU A 14 145.66 -172.24 REMARK 500 CYS A 15 78.33 63.46 REMARK 500 GLU A 17 -88.85 -52.65 REMARK 500 TRP A 18 125.53 57.35 REMARK 500 ALA A 19 88.84 -57.20 REMARK 500 SER A 27 -97.41 -119.09 REMARK 500 LYS A 28 -132.72 -61.73 REMARK 500 CYS A 30 -104.72 178.41 REMARK 500 CYS A 39 -66.90 -120.96 REMARK 500 GLN A 42 -142.25 -114.99 REMARK 500 THR A 43 144.77 141.71 REMARK 500 GLN A 44 -167.12 165.24 REMARK 500 CYS A 48 132.77 -174.35 REMARK 500 PRO A 51 35.77 -79.17 REMARK 500 CYS A 52 60.49 39.19 REMARK 500 ASN A 53 33.71 -92.76 REMARK 500 GLU A 57 95.40 148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 35 0.24 SIDE CHAIN REMARK 500 ARG A 45 0.25 SIDE CHAIN REMARK 500 ARG A 47 0.23 SIDE CHAIN REMARK 500 ARG A 49 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MKN A 1 59 UNP P21741 MK_HUMAN 23 81 SEQRES 1 A 59 LYS LYS LYS ASP LYS VAL LYS LYS GLY GLY PRO GLY SER SEQRES 2 A 59 GLU CYS ALA GLU TRP ALA TRP GLY PRO CYS THR PRO SER SEQRES 3 A 59 SER LYS ASP CYS GLY VAL GLY PHE ARG GLU GLY THR CYS SEQRES 4 A 59 GLY ALA GLN THR GLN ARG ILE ARG CYS ARG VAL PRO CYS SEQRES 5 A 59 ASN TRP LYS LYS GLU PHE GLY SHEET 1 B1 3 TRP A 20 PRO A 25 0 SHEET 2 B1 3 VAL A 32 CYS A 39 -1 O GLU A 36 N GLY A 21 SHEET 3 B1 3 GLN A 42 VAL A 50 -1 O ILE A 46 N ARG A 35 SSBOND 1 CYS A 15 CYS A 39 1555 1555 2.02 SSBOND 2 CYS A 23 CYS A 48 1555 1555 2.02 SSBOND 3 CYS A 30 CYS A 52 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000