HEADER IMMUNE SYSTEM 29-AUG-02 1ML0 TITLE VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 IN TITLE 2 COMPLEX WITH THE P8A VARIANT OF CC-CHEMOKINE MCP-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: M3 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SMALL INDUCIBLE CYTOKINE; COMPND 7 CHAIN: D; COMPND 8 SYNONYM: CCL2, MONOCYTE CHEMOTACTIC PROTEIN 1, MCP-1, MONOCYTE COMPND 9 CHEMOTACTIC PROTEIN 1, MCP-1, MONOCYTE CHEMOATTRACTANT PROTEIN-1, COMPND 10 MONOCYTE CHEMOTACTIC AND ACTIVATING FACTOR, MCAF, MONOCYTE SECRETORY COMPND 11 PROTEIN JE, HC11; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURID HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: MURINE HERPESVIRUS 68; SOURCE 4 ORGANISM_TAXID: 33708; SOURCE 5 GENE: M3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: MONOCYTE CHEMOATTRACTANT PROTEIN 1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 PLYS S; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PAED-4 KEYWDS HERPESVIRUS, VIRAL IMMUNE EVASION, CHEMOKINE BINDING PROTEIN, DECOY KEYWDS 2 RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ALEXANDER,D.H.FREMONT REVDAT 4 27-OCT-21 1ML0 1 SEQADV REVDAT 3 13-JUL-11 1ML0 1 VERSN REVDAT 2 24-FEB-09 1ML0 1 VERSN REVDAT 1 13-NOV-02 1ML0 0 JRNL AUTH J.M.ALEXANDER,C.A.NELSON,V.VAN BERKEL,E.K.LAU,J.M.STUDTS, JRNL AUTH 2 T.J.BRETT,S.H.SPECK,T.M.HANDEL,H.W.VIRGIN,D.H.FREMONT JRNL TITL STRUCTURAL BASIS OF CHEMOKINE SEQUESTRATION BY A HERPESVIRUS JRNL TITL 2 DECOY RECEPTOR JRNL REF CELL(CAMBRIDGE,MASS.) V. 111 343 2002 JRNL REFN ISSN 0092-8674 JRNL PMID 12419245 JRNL DOI 10.1016/S0092-8674(02)01007-3 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 36852.370 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 10904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 569 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1564 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 91 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.22000 REMARK 3 B22 (A**2) : -14.22000 REMARK 3 B33 (A**2) : 28.43000 REMARK 3 B12 (A**2) : 5.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.60 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.420 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.790 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 43.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ML0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000016993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 4.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11156 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42200 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD AND MOLECULAR REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, CNS REMARK 200 STARTING MODEL: PDB ENTRY 1MKF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG4000 200MM, SODIUM ACETATE, REMARK 280 100MM MAGNESIUM CHLORIDE, PH 4.10, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.90000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 78.90000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 78.90000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 78.90000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLN D 1 REMARK 465 PRO D 2 REMARK 465 ASP D 3 REMARK 465 ALA D 4 REMARK 465 ILE D 5 REMARK 465 ASN D 6 REMARK 465 ALA D 7 REMARK 465 GLN D 72 REMARK 465 THR D 73 REMARK 465 PRO D 74 REMARK 465 LYS D 75 REMARK 465 THR D 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 25 34.24 -95.00 REMARK 500 LYS A 27 117.71 -37.06 REMARK 500 ALA A 40 -113.85 -86.54 REMARK 500 THR A 42 36.83 -87.57 REMARK 500 ASP A 103 -143.15 -95.55 REMARK 500 LEU A 134 -70.60 -92.69 REMARK 500 LEU A 139 98.01 -59.31 REMARK 500 PHE A 146 148.10 -177.40 REMARK 500 SER A 205 146.55 -30.63 REMARK 500 PRO A 209 -170.49 -69.46 REMARK 500 CYS A 218 63.70 -113.69 REMARK 500 ASN A 220 72.23 55.25 REMARK 500 GLU A 238 -74.90 -63.65 REMARK 500 PRO A 253 173.84 -47.16 REMARK 500 ARG A 310 70.90 -159.92 REMARK 500 PRO A 311 98.78 -60.37 REMARK 500 SER A 346 -149.55 -113.80 REMARK 500 GLU A 370 112.69 -35.31 REMARK 500 ALA D 26 -83.27 -67.76 REMARK 500 SER D 27 -168.47 -114.09 REMARK 500 TYR D 28 137.17 -171.77 REMARK 500 LYS D 69 26.63 -78.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MKF RELATED DB: PDB REMARK 900 VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 REMARK 900 RELATED ID: 1DOK RELATED DB: PDB REMARK 900 MONOCYTE CHEMOATTRACTANT PROTEIN 1 DBREF 1ML0 A 1 382 UNP O41925 O41925_MHV68 25 406 DBREF 1ML0 D 1 76 UNP P13500 CCL2_HUMAN 24 99 SEQADV 1ML0 ALA D 8 UNP P13500 PRO 31 ENGINEERED MUTATION SEQADV 1ML0 ILE D 64 UNP P13500 MET 87 ENGINEERED MUTATION SEQRES 1 A 382 LEU THR LEU GLY LEU ALA PRO ALA LEU SER THR HIS SER SEQRES 2 A 382 SER GLY VAL SER THR GLN SER VAL ASP LEU SER GLN ILE SEQRES 3 A 382 LYS ARG GLY ASP GLU ILE GLN ALA HIS CYS LEU THR PRO SEQRES 4 A 382 ALA GLU THR GLU VAL THR GLU CYS ALA GLY ILE LEU LYS SEQRES 5 A 382 ASP VAL LEU SER LYS ASN LEU HIS GLU LEU GLN GLY LEU SEQRES 6 A 382 CYS ASN VAL LYS ASN LYS MET GLY VAL PRO TRP VAL SER SEQRES 7 A 382 VAL GLU GLU LEU GLY GLN GLU ILE ILE THR GLY ARG LEU SEQRES 8 A 382 PRO PHE PRO SER VAL GLY GLY THR PRO VAL ASN ASP LEU SEQRES 9 A 382 VAL ARG VAL LEU VAL VAL ALA GLU SER ASN THR PRO GLU SEQRES 10 A 382 GLU THR PRO GLU GLU GLU PHE TYR ALA TYR VAL GLU LEU SEQRES 11 A 382 GLN THR GLU LEU TYR THR PHE GLY LEU SER ASP ASP ASN SEQRES 12 A 382 VAL VAL PHE THR SER ASP TYR MET THR VAL TRP MET ILE SEQRES 13 A 382 ASP ILE PRO LYS SER TYR VAL ASP VAL GLY MET LEU THR SEQRES 14 A 382 ARG ALA THR PHE LEU GLU GLN TRP PRO GLY ALA LYS VAL SEQRES 15 A 382 THR VAL MET ILE PRO TYR SER SER THR PHE THR TRP CYS SEQRES 16 A 382 GLY GLU LEU GLY ALA ILE SER GLU GLU SER ALA PRO GLN SEQRES 17 A 382 PRO SER LEU SER ALA ARG SER PRO VAL CYS LYS ASN SER SEQRES 18 A 382 ALA ARG TYR SER THR SER LYS PHE CYS GLU VAL ASP GLY SEQRES 19 A 382 CYS THR ALA GLU THR GLY MET GLU LYS MET SER LEU LEU SEQRES 20 A 382 THR PRO PHE GLY GLY PRO PRO GLN GLN ALA LYS MET ASN SEQRES 21 A 382 THR CYS PRO CYS TYR TYR LYS TYR SER VAL SER PRO LEU SEQRES 22 A 382 PRO ALA MET ASP HIS LEU ILE LEU ALA ASP LEU ALA GLY SEQRES 23 A 382 LEU ASP SER LEU THR SER PRO VAL TYR VAL MET ALA ALA SEQRES 24 A 382 TYR PHE ASP SER THR HIS GLU ASN PRO VAL ARG PRO SER SEQRES 25 A 382 SER LYS LEU TYR HIS CYS ALA LEU GLN MET THR SER HIS SEQRES 26 A 382 ASP GLY VAL TRP THR SER THR SER SER GLU GLN CYS PRO SEQRES 27 A 382 ILE ARG LEU VAL GLU GLY GLN SER GLN ASN VAL LEU GLN SEQRES 28 A 382 VAL ARG VAL ALA PRO THR SER MET PRO ASN LEU VAL GLY SEQRES 29 A 382 VAL SER LEU MET LEU GLU GLY GLN GLN TYR ARG LEU GLU SEQRES 30 A 382 TYR PHE GLY ASP HIS SEQRES 1 D 76 GLN PRO ASP ALA ILE ASN ALA ALA VAL THR CYS CYS TYR SEQRES 2 D 76 ASN PHE THR ASN ARG LYS ILE SER VAL GLN ARG LEU ALA SEQRES 3 D 76 SER TYR ARG ARG ILE THR SER SER LYS CYS PRO LYS GLU SEQRES 4 D 76 ALA VAL ILE PHE LYS THR ILE VAL ALA LYS GLU ILE CYS SEQRES 5 D 76 ALA ASP PRO LYS GLN LYS TRP VAL GLN ASP SER ILE ASP SEQRES 6 D 76 HIS LEU ASP LYS GLN THR GLN THR PRO LYS THR FORMUL 3 HOH *43(H2 O) HELIX 1 1 ASP A 22 ILE A 26 5 5 HELIX 2 2 ARG A 28 CYS A 36 1 9 HELIX 3 3 VAL A 44 ASN A 58 1 15 HELIX 4 4 HIS A 60 CYS A 66 5 7 HELIX 5 5 SER A 161 VAL A 163 5 3 HELIX 6 6 ASN A 220 SER A 225 5 6 HELIX 7 7 PHE A 229 GLY A 234 1 6 HELIX 8 8 CYS A 262 SER A 269 1 8 HELIX 9 9 SER A 358 PRO A 360 5 3 HELIX 10 10 SER D 21 GLN D 23 5 3 HELIX 11 11 GLN D 57 LYS D 69 1 13 SHEET 1 A 7 GLY A 15 THR A 18 0 SHEET 2 A 7 VAL A 68 PRO A 75 -1 O LYS A 71 N GLY A 15 SHEET 3 A 7 PHE A 192 ILE A 201 1 O GLY A 199 N VAL A 74 SHEET 4 A 7 LYS A 181 SER A 189 -1 N ILE A 186 O TRP A 194 SHEET 5 A 7 LEU A 104 GLU A 112 -1 N LEU A 108 O MET A 185 SHEET 6 A 7 MET A 151 PRO A 159 -1 O ILE A 158 N VAL A 105 SHEET 7 A 7 VAL A 144 SER A 148 -1 N PHE A 146 O VAL A 153 SHEET 1 B 5 VAL A 77 VAL A 79 0 SHEET 2 B 5 GLN A 84 GLY A 89 -1 O ILE A 86 N VAL A 77 SHEET 3 B 5 LEU A 168 PHE A 173 -1 O ALA A 171 N ILE A 87 SHEET 4 B 5 TYR A 127 GLN A 131 -1 N GLN A 131 O LEU A 168 SHEET 5 B 5 THR A 136 GLY A 138 -1 O PHE A 137 N LEU A 130 SHEET 1 C 6 SER A 212 PRO A 216 0 SHEET 2 C 6 GLN A 372 GLU A 377 1 O ARG A 375 N SER A 215 SHEET 3 C 6 LEU A 362 LEU A 369 -1 N LEU A 369 O GLN A 372 SHEET 4 C 6 VAL A 294 PHE A 301 -1 N MET A 297 O SER A 366 SHEET 5 C 6 LEU A 315 HIS A 325 -1 O LEU A 320 N VAL A 296 SHEET 6 C 6 VAL A 328 SER A 331 -1 O VAL A 328 N HIS A 325 SHEET 1 D 5 MET A 244 LEU A 246 0 SHEET 2 D 5 GLN A 256 ASN A 260 -1 O MET A 259 N SER A 245 SHEET 3 D 5 LEU A 279 ALA A 285 -1 O ALA A 285 N GLN A 256 SHEET 4 D 5 VAL A 349 VAL A 354 -1 O LEU A 350 N LEU A 284 SHEET 5 D 5 ILE A 339 GLU A 343 -1 N VAL A 342 O GLN A 351 SHEET 1 E 2 LEU A 273 PRO A 274 0 SHEET 2 E 2 THR D 10 CYS D 11 -1 O CYS D 11 N LEU A 273 SHEET 1 F 3 LEU D 25 ARG D 30 0 SHEET 2 F 3 VAL D 41 THR D 45 -1 O ILE D 42 N ARG D 29 SHEET 3 F 3 GLU D 50 ALA D 53 -1 O ILE D 51 N PHE D 43 SSBOND 1 CYS A 36 CYS A 47 1555 1555 2.05 SSBOND 2 CYS A 66 CYS A 195 1555 1555 2.04 SSBOND 3 CYS A 218 CYS A 264 1555 1555 2.04 SSBOND 4 CYS A 235 CYS A 262 1555 1555 2.03 SSBOND 5 CYS A 318 CYS A 337 1555 1555 2.05 SSBOND 6 CYS D 11 CYS D 36 1555 1555 2.04 SSBOND 7 CYS D 12 CYS D 52 1555 1555 2.03 CRYST1 99.200 99.200 78.900 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010081 0.005820 0.000000 0.00000 SCALE2 0.000000 0.011640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012674 0.00000