HEADER CONTRACTILE PROTEIN 21-MAR-95 1MMD TITLE TRUNCATED HEAD OF MYOSIN FROM DICTYOSTELIUM DISCOIDEUM COMPLEXED WITH TITLE 2 MGADP-BEF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOTOR DOMAIN; COMPND 5 EC: 3.6.1.32; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: GENETICALLY TRUNCATED HEAD OF MYOSIN FROM COMPND 9 DICTYOSTELIUM DISCOIDEUM, LIGANDS ADP AND BEF(3) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 EXPRESSION_SYSTEM: DICTYOSTELIUM DISCOIDEUM; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 44689 KEYWDS ATPASE, MYOSIN, COILED COIL, ACTIN-BINDING, ATP-BINDING, HEPTAD KEYWDS 2 REPEAT PATTERN, METHYLATION, ALKYLATION, PHOSPHORYLATION, KEYWDS 3 CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.FISHER,H.M.HOLDEN,I.RAYMENT REVDAT 3 14-FEB-24 1MMD 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1MMD 1 VERSN REVDAT 1 17-AUG-96 1MMD 0 JRNL AUTH A.J.FISHER,C.A.SMITH,J.B.THODEN,R.SMITH,K.SUTOH,H.M.HOLDEN, JRNL AUTH 2 I.RAYMENT JRNL TITL X-RAY STRUCTURES OF THE MYOSIN MOTOR DOMAIN OF DICTYOSTELIUM JRNL TITL 2 DISCOIDEUM COMPLEXED WITH MGADP.BEFX AND MGADP.ALF4-. JRNL REF BIOCHEMISTRY V. 34 8960 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7619795 JRNL DOI 10.1021/BI00028A004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.ITAKURA,H.YAMAKAWA,Y.Y.TOYOSHIMA,A.ISHIJIMA,T.KOJIMA, REMARK 1 AUTH 2 Y.HARADA,T.YANAGIDA,T.WAKABAYASHI,K.SUTOH REMARK 1 TITL FORCE-GENERATING DOMAIN OF MYOSIN MOTOR REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 196 1504 1993 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 2 REMARK 1 AUTH I.RAYMENT,W.R.RYPNIEWSKI,K.SCHMIDT-BASE,R.SMITH, REMARK 1 AUTH 2 D.R.TOMCHICK,M.M.BENNING,D.A.WINKELMANN,G.WESENBERG, REMARK 1 AUTH 3 H.M.HOLDEN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF MYOSIN SUBFRAGMENT-1: A REMARK 1 TITL 2 MOLECULAR MOTOR REMARK 1 REF SCIENCE V. 261 50 1993 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 63717 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1910 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.015 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.260 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 91.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 91.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 TRP A 501 REMARK 465 THR A 502 REMARK 465 PHE A 503 REMARK 465 ILE A 504 REMARK 465 ASP A 505 REMARK 465 PHE A 506 REMARK 465 GLY A 507 REMARK 465 LYS A 622 REMARK 465 LYS A 623 REMARK 465 GLY A 624 REMARK 465 ALA A 625 REMARK 465 ASN A 626 REMARK 465 LEU A 760 REMARK 465 PRO A 761 REMARK 465 ASN A 762 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 ND2 REMARK 470 ASP A 42 OD1 OD2 REMARK 470 VAL A 65 CG1 CG2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 203 CG OD1 ND2 REMARK 470 GLN A 204 CG CD OE1 NE2 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 THR A 274 OG1 CG2 REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 ASN A 500 CG OD1 ND2 REMARK 470 LEU A 508 CG CD1 CD2 REMARK 470 PHE A 627 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 628 CG1 CG2 REMARK 470 LYS A 670 CG CD CE NZ REMARK 470 LEU A 707 CD1 CD2 REMARK 470 PRO A 713 CG CD REMARK 470 ARG A 714 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 715 CG OD1 OD2 REMARK 470 TYR A 737 OH REMARK 470 ARG A 758 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 759 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 510 O HOH A 1094 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 521 O HOH A 1280 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 48 CD GLU A 48 OE2 0.071 REMARK 500 GLU A 89 CD GLU A 89 OE2 0.080 REMARK 500 GLU A 138 CD GLU A 138 OE2 0.071 REMARK 500 GLU A 187 CD GLU A 187 OE2 0.068 REMARK 500 GLU A 264 CD GLU A 264 OE1 -0.066 REMARK 500 GLU A 291 CD GLU A 291 OE2 0.068 REMARK 500 GLU A 339 CD GLU A 339 OE2 0.074 REMARK 500 GLU A 340 CD GLU A 340 OE2 0.090 REMARK 500 GLU A 360 CD GLU A 360 OE2 0.075 REMARK 500 GLU A 390 CD GLU A 390 OE2 0.068 REMARK 500 GLU A 412 CD GLU A 412 OE2 0.077 REMARK 500 GLU A 444 CD GLU A 444 OE2 0.075 REMARK 500 GLU A 459 CD GLU A 459 OE2 0.070 REMARK 500 GLU A 492 CD GLU A 492 OE2 0.070 REMARK 500 GLU A 497 CD GLU A 497 OE2 0.069 REMARK 500 GLU A 597 CD GLU A 597 OE2 0.068 REMARK 500 GLU A 636 CD GLU A 636 OE2 0.076 REMARK 500 GLU A 683 CD GLU A 683 OE2 0.073 REMARK 500 GLU A 717 CD GLU A 717 OE2 0.073 REMARK 500 GLU A 735 CD GLU A 735 OE2 0.078 REMARK 500 GLU A 755 CD GLU A 755 OE2 0.074 REMARK 500 GLU A 756 CD GLU A 756 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 45 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 113 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 146 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 160 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 168 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 169 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 238 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 TYR A 278 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 314 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 322 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 322 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 403 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 419 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 509 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 573 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR A 573 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 583 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 583 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 590 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 595 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 595 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 605 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 674 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 753 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 -4.37 -57.15 REMARK 500 LEU A 97 76.81 -109.48 REMARK 500 ARG A 202 67.61 -109.62 REMARK 500 ARG A 238 35.34 -94.49 REMARK 500 THR A 274 -18.51 82.71 REMARK 500 ALA A 299 -149.39 -153.10 REMARK 500 LYS A 361 -148.20 -118.62 REMARK 500 ALA A 400 62.48 -102.18 REMARK 500 SER A 465 -167.12 -114.28 REMARK 500 ASN A 711 -74.84 -176.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 186 OG1 REMARK 620 2 SER A 237 OG 87.2 REMARK 620 3 ADP A 999 O2B 89.4 170.3 REMARK 620 4 BEF A1000 F3 174.5 98.2 85.1 REMARK 620 5 HOH A1001 O 94.4 85.7 85.5 85.1 REMARK 620 6 HOH A1002 O 86.8 94.3 94.6 93.6 178.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A1000 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 999 O3B REMARK 620 2 BEF A1000 F1 108.5 REMARK 620 3 BEF A1000 F2 109.6 111.1 REMARK 620 4 BEF A1000 F3 108.5 107.9 111.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 1000 DBREF 1MMD A 1 759 UNP P08799 MYS2_DICDI 1 759 SEQADV 1MMD ASP A 42 UNP P08799 LYS 42 CONFLICT SEQADV 1MMD CYS A 312 UNP P08799 TYR 312 CONFLICT SEQADV 1MMD GLU A 321 UNP P08799 SER 321 CONFLICT SEQADV 1MMD ASP A 322 UNP P08799 GLU 322 CONFLICT SEQADV 1MMD SER A 443 UNP P08799 GLN 443 CONFLICT SEQADV 1MMD ALA A 446 UNP P08799 LYS 446 CONFLICT SEQADV 1MMD VAL A 489 UNP P08799 LEU 489 CONFLICT SEQRES 1 A 762 MET ASN PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS SEQRES 2 A 762 TYR LEU LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS SEQRES 3 A 762 LEU THR VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO SEQRES 4 A 762 ASP PRO ASP GLU ARG ASP SER TYR GLU CYS GLY GLU ILE SEQRES 5 A 762 VAL SER GLU THR SER ASP SER PHE THR PHE LYS THR VAL SEQRES 6 A 762 ASP GLY GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN SEQRES 7 A 762 GLN ARG ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SEQRES 8 A 762 SER GLU LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS SEQRES 9 A 762 ASN LEU ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR SEQRES 10 A 762 TYR SER GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS SEQRES 11 A 762 ARG ILE PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE SEQRES 12 A 762 LYS GLY ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE SEQRES 13 A 762 ALA ILE SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP SEQRES 14 A 762 ARG GLN ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY SEQRES 15 A 762 ALA GLY LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR SEQRES 16 A 762 LEU ALA SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER SEQRES 17 A 762 GLY VAL LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE SEQRES 18 A 762 LEU GLU ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN SEQRES 19 A 762 ASN SER SER ARG PHE GLY LYS PHE ILE GLU ILE GLN PHE SEQRES 20 A 762 ASN ASN ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER SEQRES 21 A 762 TYR LEU LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU SEQRES 22 A 762 THR GLU ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA SEQRES 23 A 762 GLY ALA THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA SEQRES 24 A 762 GLY PRO GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS SEQRES 25 A 762 VAL ASP ILE LYS GLY VAL SER ASP GLU ASP GLU PHE LYS SEQRES 26 A 762 ILE THR ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN SEQRES 27 A 762 GLU GLU GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE SEQRES 28 A 762 LEU HIS LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY SEQRES 29 A 762 GLU GLY ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA SEQRES 30 A 762 ALA SER THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU SEQRES 31 A 762 LYS ALA LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP SEQRES 32 A 762 LEU VAL ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SEQRES 33 A 762 SER ARG ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU SEQRES 34 A 762 PHE LEU TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS SEQRES 35 A 762 SER GLU ARG ALA ALA TYR PHE ILE GLY VAL LEU ASP ILE SEQRES 36 A 762 SER GLY PHE GLU ILE PHE LYS VAL ASN SER PHE GLU GLN SEQRES 37 A 762 LEU CYS ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE SEQRES 38 A 762 PHE ASN HIS HIS MET PHE LYS VAL GLU GLN GLU GLU TYR SEQRES 39 A 762 LEU LYS GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY SEQRES 40 A 762 LEU ASP SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG SEQRES 41 A 762 GLN PRO PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER SEQRES 42 A 762 VAL PHE PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS SEQRES 43 A 762 LEU HIS SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU SEQRES 44 A 762 GLU PRO ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS SEQRES 45 A 762 TYR ALA GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU SEQRES 46 A 762 GLU LYS ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU SEQRES 47 A 762 CYS PHE LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU SEQRES 48 A 762 PHE ASN ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY SEQRES 49 A 762 ALA ASN PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN SEQRES 50 A 762 LEU ALA SER LEU MET ALA THR LEU GLU THR THR ASN PRO SEQRES 51 A 762 HIS PHE VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU SEQRES 52 A 762 PRO ALA LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU SEQRES 53 A 762 ARG CYS ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG SEQRES 54 A 762 LYS GLY PHE PRO ASN ARG ILE ILE TYR ALA ASP PHE VAL SEQRES 55 A 762 LYS ARG TYR TYR LEU LEU ALA PRO ASN VAL PRO ARG ASP SEQRES 56 A 762 ALA GLU ASP SER GLN LYS ALA THR ASP ALA VAL LEU LYS SEQRES 57 A 762 HIS LEU ASN ILE ASP PRO GLU GLN TYR ARG PHE GLY ILE SEQRES 58 A 762 THR LYS ILE PHE PHE ARG ALA GLY GLN LEU ALA ARG ILE SEQRES 59 A 762 GLU GLU ALA ARG GLU LEU PRO ASN HET MG A 998 1 HET ADP A 999 27 HET BEF A1000 4 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 BEF BE F3 1- FORMUL 5 HOH *375(H2 O) HELIX 1 1 ASP A 10 LEU A 15 1 6 HELIX 2 2 PHE A 25 THR A 28 5 4 HELIX 3 3 LYS A 74 ASP A 76 5 3 HELIX 4 4 ILE A 83 PHE A 85 5 3 HELIX 5 5 MET A 91 GLU A 93 5 3 HELIX 6 6 GLU A 99 GLN A 112 1 14 HELIX 7 7 GLN A 137 PHE A 143 1 7 HELIX 8 8 ILE A 155 ASP A 169 1 15 HELIX 9 9 LYS A 185 ALA A 200 1 16 HELIX 10 10 VAL A 210 GLY A 226 1 17 HELIX 11 11 LYS A 265 VAL A 268 5 4 HELIX 12 12 HIS A 279 GLY A 287 1 9 HELIX 13 13 ALA A 290 ALA A 295 1 6 HELIX 14 14 PRO A 301 SER A 303 5 3 HELIX 15 15 ASP A 320 VAL A 334 1 15 HELIX 16 16 GLN A 338 ASN A 356 1 19 HELIX 17 17 THR A 373 PHE A 382 1 10 HELIX 18 18 PRO A 386 MET A 394 1 9 HELIX 19 19 VAL A 411 LEU A 441 1 31 HELIX 20 20 PHE A 466 GLU A 497 1 32 HELIX 21 21 ASP A 509 ASP A 518 1 10 HELIX 22 22 ILE A 525 VAL A 534 1 10 HELIX 23 23 ASP A 540 PHE A 551 1 12 HELIX 24 24 TRP A 584 LYS A 589 1 6 HELIX 25 25 GLN A 594 ASP A 602 1 9 HELIX 26 26 ASN A 606 ASN A 613 1 8 HELIX 27 27 PRO A 615 ALA A 618 1 4 HELIX 28 28 VAL A 630 THR A 647 1 18 HELIX 29 29 ASP A 669 CYS A 678 1 10 HELIX 30 30 VAL A 681 LYS A 690 1 10 HELIX 31 31 TYR A 698 LEU A 708 1 11 HELIX 32 32 SER A 719 HIS A 729 1 11 HELIX 33 33 GLN A 750 GLU A 755 1 6 SHEET 1 A 4 TYR A 34 TYR A 37 0 SHEET 2 A 4 GLU A 48 GLU A 55 -1 N GLY A 50 O ILE A 35 SHEET 3 A 4 SER A 59 LYS A 63 -1 N LYS A 63 O GLU A 51 SHEET 4 A 4 ASP A 69 LYS A 73 -1 N VAL A 72 O PHE A 60 SHEET 1 B 7 TYR A 116 SER A 119 0 SHEET 2 B 7 PHE A 122 VAL A 126 -1 N VAL A 124 O THR A 117 SHEET 3 B 7 ASN A 649 ILE A 656 1 N PHE A 652 O LEU A 123 SHEET 4 B 7 GLN A 173 GLY A 179 1 N SER A 174 O ASN A 649 SHEET 5 B 7 TYR A 448 SER A 456 1 N GLY A 451 O GLN A 173 SHEET 6 B 7 GLY A 240 PHE A 247 -1 N PHE A 247 O TYR A 448 SHEET 7 B 7 ILE A 253 TYR A 261 -1 N TYR A 261 O GLY A 240 SHEET 1 C 2 ARG A 397 ALA A 400 0 SHEET 2 C 2 ASP A 403 ALA A 406 -1 N VAL A 405 O ILE A 398 SHEET 1 D 3 TYR A 558 GLU A 560 0 SHEET 2 D 3 GLU A 567 HIS A 572 -1 N GLY A 569 O GLU A 559 SHEET 3 D 3 GLY A 575 GLU A 580 -1 N TYR A 579 O PHE A 568 SHEET 1 E 3 ASN A 694 ILE A 697 0 SHEET 2 E 3 LYS A 743 PHE A 746 -1 N PHE A 746 O ASN A 694 SHEET 3 E 3 TYR A 737 PHE A 739 -1 N ARG A 738 O PHE A 745 LINK OG1 THR A 186 MG MG A 998 1555 1555 2.10 LINK OG SER A 237 MG MG A 998 1555 1555 2.33 LINK MG MG A 998 O2B ADP A 999 1555 1555 2.12 LINK MG MG A 998 F3 BEF A1000 1555 1555 2.06 LINK MG MG A 998 O HOH A1001 1555 1555 2.15 LINK MG MG A 998 O HOH A1002 1555 1555 2.06 LINK O3B ADP A 999 BE BEF A1000 1555 1555 1.57 CISPEP 1 GLN A 521 PRO A 522 0 -3.07 SITE 1 AC1 6 THR A 186 SER A 237 ADP A 999 BEF A1000 SITE 2 AC1 6 HOH A1001 HOH A1002 SITE 1 AC2 23 ASN A 127 PRO A 128 PHE A 129 LYS A 130 SITE 2 AC2 23 ARG A 131 TYR A 135 GLU A 180 SER A 181 SITE 3 AC2 23 GLY A 182 ALA A 183 GLY A 184 LYS A 185 SITE 4 AC2 23 THR A 186 GLU A 187 ASN A 233 MG A 998 SITE 5 AC2 23 BEF A1000 HOH A1001 HOH A1002 HOH A1033 SITE 6 AC2 23 HOH A1175 HOH A1343 HOH A1344 SITE 1 AC3 11 SER A 181 GLY A 182 LYS A 185 ASN A 233 SITE 2 AC3 11 SER A 236 SER A 237 MG A 998 ADP A 999 SITE 3 AC3 11 HOH A1001 HOH A1002 HOH A1181 CRYST1 105.300 182.600 54.700 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018282 0.00000