HEADER VIRAL PROTEIN/RNA 25-JUL-96 1MNB TITLE BIV TAT PEPTIDE (RESIDUES 68-81), NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIV TAR RNA; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: RESIDUES 4 - 32; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BIV TAT PEPTIDE; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: RESIDUES 68 - 81; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2 KEYWDS COMPLEX (REGULATORY PROTEIN-RNA), TRANSCRIPTION REGULATION, VIRAL KEYWDS 2 PROTEIN-RNA COMPLEX EXPDTA SOLUTION NMR AUTHOR J.D.PUGLISI,L.CHEN,S.BLANCHARD,A.D.FRANKEL REVDAT 3 23-FEB-22 1MNB 1 REMARK REVDAT 2 24-FEB-09 1MNB 1 VERSN REVDAT 1 27-JAN-97 1MNB 0 JRNL AUTH J.D.PUGLISI,L.CHEN,S.BLANCHARD,A.D.FRANKEL JRNL TITL SOLUTION STRUCTURE OF A BOVINE IMMUNODEFICIENCY VIRUS JRNL TITL 2 TAT-TAR PEPTIDE-RNA COMPLEX. JRNL REF SCIENCE V. 270 1200 1995 JRNL REFN ISSN 0036-8075 JRNL PMID 7502045 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRARCHITECT, DISCOVER DISCOVER REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175081. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: 50 MM NACL 10MM NA PHOSPHATE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 N1 G B 1 C2 0.100 REMARK 500 G B 1 N3 G B 1 C4 0.100 REMARK 500 G B 1 C4 G B 1 C5 0.063 REMARK 500 G B 1 C5 G B 1 C6 0.126 REMARK 500 G B 1 N7 G B 1 C8 0.070 REMARK 500 G B 1 C2 G B 1 N2 0.068 REMARK 500 G B 2 N1 G B 2 C2 0.101 REMARK 500 G B 2 N3 G B 2 C4 0.096 REMARK 500 G B 2 C4 G B 2 C5 0.059 REMARK 500 G B 2 C5 G B 2 C6 0.124 REMARK 500 G B 2 N7 G B 2 C8 0.071 REMARK 500 G B 2 C2 G B 2 N2 0.067 REMARK 500 C B 3 C4 C B 3 N4 0.073 REMARK 500 C B 3 N1 C B 3 C6 0.128 REMARK 500 C B 3 C2 C B 3 N3 0.119 REMARK 500 C B 3 C4 C B 3 C5 -0.057 REMARK 500 U B 4 N1 U B 4 C6 0.120 REMARK 500 U B 4 C4 U B 4 C5 0.108 REMARK 500 C B 5 C4 C B 5 N4 0.071 REMARK 500 C B 5 N1 C B 5 C6 0.134 REMARK 500 C B 5 C2 C B 5 N3 0.115 REMARK 500 C B 5 C4 C B 5 C5 -0.058 REMARK 500 G B 6 N1 G B 6 C2 0.103 REMARK 500 G B 6 N3 G B 6 C4 0.096 REMARK 500 G B 6 C4 G B 6 C5 0.059 REMARK 500 G B 6 C5 G B 6 C6 0.126 REMARK 500 G B 6 N7 G B 6 C8 0.068 REMARK 500 G B 6 C2 G B 6 N2 0.061 REMARK 500 U B 7 N1 U B 7 C6 0.115 REMARK 500 U B 7 C4 U B 7 C5 0.117 REMARK 500 G B 8 N1 G B 8 C2 0.099 REMARK 500 G B 8 N3 G B 8 C4 0.101 REMARK 500 G B 8 C4 G B 8 C5 0.060 REMARK 500 G B 8 C5 G B 8 C6 0.126 REMARK 500 G B 8 N7 G B 8 C8 0.066 REMARK 500 G B 8 C2 G B 8 N2 0.069 REMARK 500 U B 9 N1 U B 9 C6 0.117 REMARK 500 U B 9 C4 U B 9 C5 0.119 REMARK 500 A B 10 N3 A B 10 C4 0.122 REMARK 500 A B 10 C4 A B 10 C5 0.078 REMARK 500 A B 10 N7 A B 10 C8 0.068 REMARK 500 G B 11 N1 G B 11 C2 0.101 REMARK 500 G B 11 N3 G B 11 C4 0.096 REMARK 500 G B 11 C4 G B 11 C5 0.058 REMARK 500 G B 11 C5 G B 11 C6 0.127 REMARK 500 G B 11 N7 G B 11 C8 0.076 REMARK 500 G B 11 C2 G B 11 N2 0.068 REMARK 500 C B 12 C4 C B 12 N4 0.076 REMARK 500 C B 12 N1 C B 12 C6 0.134 REMARK 500 C B 12 C2 C B 12 N3 0.114 REMARK 500 REMARK 500 THIS ENTRY HAS 110 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 1 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 G B 1 C2 - N3 - C4 ANGL. DEV. = 11.2 DEGREES REMARK 500 G B 1 N3 - C4 - C5 ANGL. DEV. = -11.2 DEGREES REMARK 500 G B 1 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 G B 1 C4 - C5 - N7 ANGL. DEV. = 2.5 DEGREES REMARK 500 G B 1 C5 - N7 - C8 ANGL. DEV. = -7.0 DEGREES REMARK 500 G B 1 N7 - C8 - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 G B 1 C8 - N9 - C4 ANGL. DEV. = -7.2 DEGREES REMARK 500 G B 1 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 G B 1 N3 - C4 - N9 ANGL. DEV. = 8.6 DEGREES REMARK 500 G B 1 C6 - C5 - N7 ANGL. DEV. = -4.1 DEGREES REMARK 500 G B 1 C5 - C6 - O6 ANGL. DEV. = -4.9 DEGREES REMARK 500 G B 2 OP1 - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 G B 2 C2 - N3 - C4 ANGL. DEV. = 11.2 DEGREES REMARK 500 G B 2 N3 - C4 - C5 ANGL. DEV. = -11.0 DEGREES REMARK 500 G B 2 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 G B 2 C5 - N7 - C8 ANGL. DEV. = -7.2 DEGREES REMARK 500 G B 2 N7 - C8 - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 G B 2 C8 - N9 - C4 ANGL. DEV. = -7.2 DEGREES REMARK 500 G B 2 N9 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 G B 2 N3 - C4 - N9 ANGL. DEV. = 8.0 DEGREES REMARK 500 G B 2 C6 - C5 - N7 ANGL. DEV. = -3.9 DEGREES REMARK 500 G B 2 C5 - C6 - O6 ANGL. DEV. = -5.2 DEGREES REMARK 500 C B 3 OP1 - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 C B 3 C6 - N1 - C2 ANGL. DEV. = -3.5 DEGREES REMARK 500 C B 3 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 U B 4 OP1 - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 U B 4 N1 - C2 - N3 ANGL. DEV. = 5.7 DEGREES REMARK 500 U B 4 N3 - C2 - O2 ANGL. DEV. = -5.7 DEGREES REMARK 500 U B 4 C5 - C4 - O4 ANGL. DEV. = -4.6 DEGREES REMARK 500 C B 5 OP1 - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 C B 5 C6 - N1 - C2 ANGL. DEV. = -3.4 DEGREES REMARK 500 C B 5 C4 - C5 - C6 ANGL. DEV. = 3.4 DEGREES REMARK 500 G B 6 OP1 - P - OP2 ANGL. DEV. = -10.8 DEGREES REMARK 500 G B 6 C2 - N3 - C4 ANGL. DEV. = 11.1 DEGREES REMARK 500 G B 6 N3 - C4 - C5 ANGL. DEV. = -11.0 DEGREES REMARK 500 G B 6 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 G B 6 C4 - C5 - N7 ANGL. DEV. = 2.6 DEGREES REMARK 500 G B 6 C5 - N7 - C8 ANGL. DEV. = -7.2 DEGREES REMARK 500 G B 6 N7 - C8 - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 G B 6 C8 - N9 - C4 ANGL. DEV. = -7.1 DEGREES REMARK 500 G B 6 N9 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 G B 6 N3 - C4 - N9 ANGL. DEV. = 8.2 DEGREES REMARK 500 G B 6 C6 - C5 - N7 ANGL. DEV. = -3.9 DEGREES REMARK 500 G B 6 C5 - C6 - O6 ANGL. DEV. = -4.5 DEGREES REMARK 500 U B 7 OP1 - P - OP2 ANGL. DEV. = -10.3 DEGREES REMARK 500 U B 7 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 U B 7 N1 - C2 - N3 ANGL. DEV. = 5.6 DEGREES REMARK 500 U B 7 C5 - C6 - N1 ANGL. DEV. = -3.0 DEGREES REMARK 500 U B 7 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 190 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 -167.70 -75.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G B 2 0.08 SIDE CHAIN REMARK 500 U B 7 0.07 SIDE CHAIN REMARK 500 A B 10 0.08 SIDE CHAIN REMARK 500 C B 14 0.12 SIDE CHAIN REMARK 500 U B 16 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MNB A 1 14 UNP P19564 TAT_BIV06 68 81 DBREF 1MNB B 1 28 PDB 1MNB 1MNB 1 28 SEQRES 1 B 28 G G C U C G U G U A G C U SEQRES 2 B 28 C A U U A G C U C C G A G SEQRES 3 B 28 C C SEQRES 1 A 14 ARG PRO ARG GLY THR ARG GLY LYS GLY ARG ARG ILE ARG SEQRES 2 A 14 ARG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000