HEADER OXYGEN STORAGE 11-JAN-95 1MNK TITLE INTERACTIONS AMONG RESIDUES CD3, E7, E10 AND E11 IN MYOGLOBINS: TITLE 2 ATTEMPTS TO SIMULATE THE O2 AND CO BINDING PROPERTIES OF APLYSIA TITLE 3 MYOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823 KEYWDS OXYGEN STORAGE EXPDTA X-RAY DIFFRACTION AUTHOR S.KRZYWDA,A.J.WILKINSON REVDAT 5 14-FEB-24 1MNK 1 REMARK SEQADV LINK REVDAT 4 22-FEB-12 1MNK 1 JRNL VERSN REVDAT 3 24-FEB-09 1MNK 1 VERSN REVDAT 2 01-APR-03 1MNK 1 JRNL REVDAT 1 20-APR-95 1MNK 0 JRNL AUTH S.J.SMERDON,S.KRZYWDA,A.M.BRZOZOWSKI,G.J.DAVIES, JRNL AUTH 2 A.J.WILKINSON,A.BRANCACCIO,F.CUTRUZZOLA,C.T.ALLOCATELLI, JRNL AUTH 3 M.BRUNORI,T.LI,R.E.BRANTLEY JR.,T.E.CARVER,R.F.EICH, JRNL AUTH 4 E.SINGLETON,J.S.OLSON JRNL TITL INTERACTIONS AMONG RESIDUES CD3, E7, E10, AND E11 IN JRNL TITL 2 MYOGLOBINS: ATTEMPTS TO SIMULATE THE LIGAND-BINDING JRNL TITL 3 PROPERTIES OF APLYSIA MYOGLOBIN. JRNL REF BIOCHEMISTRY V. 34 8715 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7612611 JRNL DOI 10.1021/BI00027A022 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.D.CAMERON,S.J.SMERDON,A.J.WILKINSON,J.HABASH, REMARK 1 AUTH 2 J.R.HELLIWELL,T.LI,J.S.OLSON REMARK 1 TITL DISTAL POCKET POLARITY IN LIGAND BINDING TO MYOGLOBIN: DEOXY REMARK 1 TITL 2 AND CARBONMONOXY FORMS OF THREONINE68(E11) MUTANT REMARK 1 TITL 3 INVESTIGATED BY X-RAY CRYSTALLOGRAPHY AND INFRARED REMARK 1 TITL 4 SPECTROSCOPY REMARK 1 REF BIOCHEMISTRY V. 32 13061 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.J.OLDFIELD,S.J.SMERDON,Z.DAUTER,K.PETRATOS,K.S.WILSON, REMARK 1 AUTH 2 A.J.WILKINSON REMARK 1 TITL HIGH RESOLUTION X-RAY STRUCTURES OF PIG METMYOGLOBIN AND TWO REMARK 1 TITL 2 CD3 MUTANTS MB(LYS45-->ARG) AND MB(LYS45-->SER) REMARK 1 REF BIOCHEMISTRY V. 31 8732 1992 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.J.SMERDON,T.J.OLDFIELD,E.J.DODSON,G.G.DODSON,R.E.HUBBARD, REMARK 1 AUTH 2 A.J.WILKINSON REMARK 1 TITL DETERMINATION OF THE CRYSTAL STRUCTURE OF RECOMBINANT PIG REMARK 1 TITL 2 MYOGLOBIN BY MOLECULAR REPLACEMENT AND ITS REFINEMENT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 46 370 1990 REMARK 1 REFN ISSN 0108-7681 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.056 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.061 ; 0.060 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.015 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.136 ; 0.120 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.191 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.190 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.207 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.782 ; 5.000 REMARK 3 STAGGERED (DEGREES) : 20.046; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.000 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.689 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.632 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.984 ; 5.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.24500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.78457 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.14812 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.78457 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 46.14812 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX CHAIN RESIDUES CHAIN RESIDUES RMSD REMARK 300 M1 A 1 - A 153 B 1 - B 153 0.719 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 152 REMARK 465 GLY A 153 REMARK 465 GLN B 152 REMARK 465 GLY B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 161 O HOH B 220 2.15 REMARK 500 O HOH B 214 O HOH B 247 2.16 REMARK 500 CG1 VAL A 13 O HOH A 232 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 6 CG - CD - OE1 ANGL. DEV. = 20.4 DEGREES REMARK 500 GLU A 6 CG - CD - OE2 ANGL. DEV. = -17.3 DEGREES REMARK 500 GLU A 18 CG - CD - OE1 ANGL. DEV. = 13.0 DEGREES REMARK 500 GLU A 18 CG - CD - OE2 ANGL. DEV. = -12.9 DEGREES REMARK 500 ASP A 20 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 HIS A 24 CA - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 HIS A 24 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 GLY A 25 C - N - CA ANGL. DEV. = 13.4 DEGREES REMARK 500 ILE A 30 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS A 34 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 GLY A 35 CA - C - O ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP A 44 CB - CG - OD1 ANGL. DEV. = 9.5 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 HIS A 48 C - N - CA ANGL. DEV. = 22.7 DEGREES REMARK 500 HIS A 48 CA - CB - CG ANGL. DEV. = -12.9 DEGREES REMARK 500 GLU A 52 CG - CD - OE1 ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 GLU A 59 OE1 - CD - OE2 ANGL. DEV. = 13.5 DEGREES REMARK 500 ASP A 60 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU A 85 CG - CD - OE1 ANGL. DEV. = 13.6 DEGREES REMARK 500 TYR A 103 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 103 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 GLU A 105 OE1 - CD - OE2 ANGL. DEV. = 13.0 DEGREES REMARK 500 GLU A 109 OE1 - CD - OE2 ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU A 109 CG - CD - OE2 ANGL. DEV. = -13.3 DEGREES REMARK 500 SER A 117 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 122 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 MET A 131 CA - C - O ANGL. DEV. = 12.9 DEGREES REMARK 500 SER A 132 N - CA - CB ANGL. DEV. = -10.1 DEGREES REMARK 500 LYS A 133 CD - CE - NZ ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 GLU A 148 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 GLU B 6 CG - CD - OE1 ANGL. DEV. = 16.1 DEGREES REMARK 500 GLU B 18 CG - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 GLU B 27 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 31 NE - CZ - NH2 ANGL. DEV. = -10.7 DEGREES REMARK 500 GLY B 35 CA - C - O ANGL. DEV. = -11.0 DEGREES REMARK 500 LYS B 45 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP B 53 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP B 53 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 GLU B 54 OE1 - CD - OE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLU B 59 CG - CD - OE1 ANGL. DEV. = -13.2 DEGREES REMARK 500 THR B 67 CA - CB - CG2 ANGL. DEV. = 8.7 DEGREES REMARK 500 LEU B 69 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 GLU B 85 CG - CD - OE1 ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 71.06 -166.50 REMARK 500 HIS A 81 60.33 -103.48 REMARK 500 PHE A 123 65.61 -117.42 REMARK 500 ASP B 20 69.68 -164.28 REMARK 500 ALA B 94 -73.34 -65.81 REMARK 500 PHE B 123 65.07 -113.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE HEME IRON IN MOLECULE A IS COORDINATED TO HOH 105. REMARK 600 THE HEME IRON IN MOLECULE B IS COORDINATED TO HOH 1. REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 231 REMARK 615 HOH B 255 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 154 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HEM A 154 NA 94.0 REMARK 620 3 HEM A 154 NB 85.8 88.2 REMARK 620 4 HEM A 154 NC 89.9 174.7 88.4 REMARK 620 5 HEM A 154 ND 97.0 92.3 177.1 90.8 REMARK 620 6 HOH A 157 O 176.1 86.5 90.3 89.4 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 154 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 NE2 REMARK 620 2 HEM B 154 NA 95.3 REMARK 620 3 HEM B 154 NB 88.9 90.2 REMARK 620 4 HEM B 154 NC 90.6 174.0 89.3 REMARK 620 5 HEM B 154 ND 93.2 88.7 177.7 91.5 REMARK 620 6 HOH B 155 O 177.0 83.5 93.8 90.6 84.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 154 DBREF 1MNK A 1 153 UNP P02189 MYG_PIG 1 153 DBREF 1MNK B 1 153 UNP P02189 MYG_PIG 1 153 SEQADV 1MNK VAL A 64 UNP P02189 HIS 64 CONFLICT SEQADV 1MNK THR A 68 UNP P02189 VAL 68 CONFLICT SEQADV 1MNK VAL B 64 UNP P02189 HIS 64 CONFLICT SEQADV 1MNK THR B 68 UNP P02189 VAL 68 CONFLICT SEQRES 1 A 153 GLY LEU SER ASP GLY GLU TRP GLN LEU VAL LEU ASN VAL SEQRES 2 A 153 TRP GLY LYS VAL GLU ALA ASP VAL ALA GLY HIS GLY GLN SEQRES 3 A 153 GLU VAL LEU ILE ARG LEU PHE LYS GLY HIS PRO GLU THR SEQRES 4 A 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS SER GLU SEQRES 5 A 153 ASP GLU MET LYS ALA SER GLU ASP LEU LYS LYS VAL GLY SEQRES 6 A 153 ASN THR THR LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 A 153 LYS GLY HIS HIS GLU ALA GLU LEU THR PRO LEU ALA GLN SEQRES 8 A 153 SER HIS ALA THR LYS HIS LYS ILE PRO VAL LYS TYR LEU SEQRES 9 A 153 GLU PHE ILE SER GLU ALA ILE ILE GLN VAL LEU GLN SER SEQRES 10 A 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 A 153 MET SER LYS ALA LEU GLU LEU PHE ARG ASN ASP MET ALA SEQRES 12 A 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY SEQRES 1 B 153 GLY LEU SER ASP GLY GLU TRP GLN LEU VAL LEU ASN VAL SEQRES 2 B 153 TRP GLY LYS VAL GLU ALA ASP VAL ALA GLY HIS GLY GLN SEQRES 3 B 153 GLU VAL LEU ILE ARG LEU PHE LYS GLY HIS PRO GLU THR SEQRES 4 B 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS SER GLU SEQRES 5 B 153 ASP GLU MET LYS ALA SER GLU ASP LEU LYS LYS VAL GLY SEQRES 6 B 153 ASN THR THR LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 B 153 LYS GLY HIS HIS GLU ALA GLU LEU THR PRO LEU ALA GLN SEQRES 8 B 153 SER HIS ALA THR LYS HIS LYS ILE PRO VAL LYS TYR LEU SEQRES 9 B 153 GLU PHE ILE SER GLU ALA ILE ILE GLN VAL LEU GLN SER SEQRES 10 B 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 B 153 MET SER LYS ALA LEU GLU LEU PHE ARG ASN ASP MET ALA SEQRES 12 B 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY HET HEM A 154 43 HET HEM B 154 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *205(H2 O) HELIX 1 A SER A 3 GLU A 18 1 16 HELIX 2 B ASP A 20 GLY A 35 1 16 HELIX 3 C HIS A 36 LYS A 42 1 7 HELIX 4 D SER A 51 ALA A 57 1 7 HELIX 5 E SER A 58 LYS A 77 1 20 HELIX 6 F LEU A 86 THR A 95 1 10 HELIX 7 G PRO A 100 LYS A 118 1 19 HELIX 8 H GLY A 124 LEU A 149 1 26 HELIX 9 A SER B 3 GLU B 18 1 16 HELIX 10 B ASP B 20 GLY B 35 1 16 HELIX 11 C HIS B 36 LYS B 42 1 7 HELIX 12 D SER B 51 ALA B 57 1 7 HELIX 13 E SER B 58 LYS B 77 1 20 HELIX 14 F LEU B 86 THR B 95 1 10 HELIX 15 G PRO B 100 LYS B 118 1 19 HELIX 16 H GLY B 124 LEU B 149 1 26 LINK NE2 HIS A 93 FE HEM A 154 1555 1555 2.17 LINK FE HEM A 154 O HOH A 157 1555 1555 2.20 LINK NE2 HIS B 93 FE HEM B 154 1555 1555 2.13 LINK FE HEM B 154 O HOH B 155 1555 1555 2.36 SITE 1 AC1 16 LYS A 42 PHE A 43 LYS A 45 THR A 68 SITE 2 AC1 16 ALA A 71 LEU A 89 SER A 92 HIS A 93 SITE 3 AC1 16 HIS A 97 ILE A 99 TYR A 103 PHE A 138 SITE 4 AC1 16 HOH A 157 HOH A 169 HOH A 189 HOH A 208 SITE 1 AC2 13 LYS B 42 PHE B 43 LYS B 45 THR B 68 SITE 2 AC2 13 ALA B 71 SER B 92 HIS B 93 HIS B 97 SITE 3 AC2 13 ILE B 99 PHE B 138 HOH B 155 HOH B 248 SITE 4 AC2 13 HOH B 266 CRYST1 125.260 42.490 92.370 90.00 92.29 90.00 I 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007983 0.000000 0.000319 0.00000 SCALE2 0.000000 0.023535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010835 0.00000 MTRIX1 1 0.995734 0.046053 0.079955 -2.86951 1 MTRIX2 1 0.040991 -0.997119 0.063829 46.89454 1 MTRIX3 1 0.082664 -0.060279 -0.994753 42.53882 1