HEADER HYDROLASE 13-SEP-02 1MPZ TITLE NMR SOLUTION STRUCTURE OF NATIVE VIPERIDAE LEBETINA OBTUSA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OBTUSTATIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACROVIPERA LEBETINA OBTUSA; SOURCE 3 ORGANISM_TAXID: 209528; SOURCE 4 STRAIN: OBTUSA KEYWDS DISINTEGRIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR M.P.MORENO-MURCIANO,D.MONLEON,C.MARCINKIEWICZ,J.J.CALVETE,B.CELDA REVDAT 4 23-FEB-22 1MPZ 1 REMARK REVDAT 3 24-FEB-09 1MPZ 1 VERSN REVDAT 2 13-MAY-03 1MPZ 1 JRNL REVDAT 1 11-FEB-03 1MPZ 0 JRNL AUTH M.P.MORENO-MURCIANO,D.MONLEON,C.MARCINKIEWICZ,J.J.CALVETE, JRNL AUTH 2 B.CELDA JRNL TITL NMR SOLUTION STRUCTURE OF THE NON-RGD DISINTEGRIN OBTUSTATIN JRNL REF J.MOL.BIOL. V. 329 135 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12742023 JRNL DOI 10.1016/S0022-2836(03)00371-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA REMARK 3 AUTHORS : GUNTERT, P. (DYANA), GUNTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR, BRUNGER, A. REMARK 4 REMARK 4 1MPZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017084. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 300 REMARK 210 PH : 2.5; 2.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 3MM OBTUSTATIN, PH 2.5, HCL; 3MM REMARK 210 OBTUSTATIN, PH 2.5, HCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, SPARKY 2.9 REMARK 210 METHOD USED : MANUAL ASSIGNMENT BY WUTHRICH REMARK 210 PROTOCOLS AND AUTOMATIC NOESY REMARK 210 ASSIGNMENT EXTENSION BY NOAH REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 5 H CYS A 7 1.25 REMARK 500 HZ3 LYS A 11 O THR A 30 1.47 REMARK 500 O PRO A 5 N CYS A 7 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 22 CYS A 1 N CYS A 1 CA -0.398 REMARK 500 22 CYS A 1 CA CYS A 1 CB -0.551 REMARK 500 22 CYS A 1 CB CYS A 1 SG -0.477 REMARK 500 22 CYS A 1 CA CYS A 1 C -0.680 REMARK 500 22 CYS A 1 C CYS A 1 O -0.343 REMARK 500 22 CYS A 1 C THR A 2 N -0.293 REMARK 500 22 THR A 2 N THR A 2 CA -0.638 REMARK 500 22 THR A 2 CA THR A 2 CB -0.668 REMARK 500 22 THR A 2 CB THR A 2 OG1 -0.882 REMARK 500 22 THR A 2 CB THR A 2 CG2 -0.446 REMARK 500 22 THR A 2 C THR A 2 O -0.347 REMARK 500 22 THR A 2 C THR A 3 N -0.322 REMARK 500 22 THR A 3 CB THR A 3 OG1 -0.144 REMARK 500 22 CYS A 6 C CYS A 6 O -0.545 REMARK 500 22 CYS A 6 C CYS A 7 N -0.364 REMARK 500 22 ARG A 8 CB ARG A 8 CG -0.577 REMARK 500 22 ARG A 8 CG ARG A 8 CD -0.177 REMARK 500 22 ARG A 8 CD ARG A 8 NE -0.712 REMARK 500 22 ARG A 8 NE ARG A 8 CZ -0.329 REMARK 500 22 ARG A 8 CZ ARG A 8 NH1 -0.664 REMARK 500 22 ARG A 8 CZ ARG A 8 NH2 -0.702 REMARK 500 22 GLN A 9 CG GLN A 9 CD -0.364 REMARK 500 22 GLN A 9 CD GLN A 9 OE1 -0.704 REMARK 500 22 GLN A 9 CD GLN A 9 NE2 -0.478 REMARK 500 22 GLN A 9 C GLN A 9 O -0.589 REMARK 500 22 GLN A 9 C CYS A 10 N -0.419 REMARK 500 22 CYS A 10 CA CYS A 10 CB -0.092 REMARK 500 22 CYS A 10 CB CYS A 10 SG -0.771 REMARK 500 22 CYS A 10 C CYS A 10 O -0.155 REMARK 500 22 LYS A 11 CB LYS A 11 CG -0.179 REMARK 500 22 LYS A 11 CG LYS A 11 CD -0.364 REMARK 500 22 LYS A 11 CD LYS A 11 CE -0.297 REMARK 500 22 LYS A 11 CE LYS A 11 NZ -0.850 REMARK 500 22 LYS A 13 CB LYS A 13 CG -0.399 REMARK 500 22 LYS A 13 CG LYS A 13 CD -0.249 REMARK 500 22 LYS A 13 CD LYS A 13 CE -0.710 REMARK 500 22 LYS A 13 CE LYS A 13 NZ -0.386 REMARK 500 22 PRO A 14 C PRO A 14 O -0.309 REMARK 500 22 PRO A 14 C ALA A 15 N -0.293 REMARK 500 22 GLY A 16 C GLY A 16 O -0.498 REMARK 500 22 GLY A 16 C THR A 17 N -0.313 REMARK 500 22 THR A 17 C THR A 17 O -0.190 REMARK 500 22 THR A 17 C THR A 18 N -0.154 REMARK 500 22 THR A 18 CB THR A 18 OG1 -0.136 REMARK 500 22 THR A 18 C THR A 18 O -0.380 REMARK 500 22 THR A 18 C CYS A 19 N -0.342 REMARK 500 22 CYS A 19 CB CYS A 19 SG -0.129 REMARK 500 22 TRP A 20 CG TRP A 20 CD2 -0.460 REMARK 500 22 TRP A 20 CG TRP A 20 CD1 -0.593 REMARK 500 22 TRP A 20 NE1 TRP A 20 CE2 -0.903 REMARK 500 REMARK 500 THIS ENTRY HAS 135 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 22 CYS A 1 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 22 CYS A 1 N - CA - CB ANGL. DEV. = 31.3 DEGREES REMARK 500 22 CYS A 1 CA - CB - SG ANGL. DEV. = 51.5 DEGREES REMARK 500 22 CYS A 1 CA - C - O ANGL. DEV. = -13.0 DEGREES REMARK 500 22 CYS A 1 O - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 22 THR A 2 N - CA - CB ANGL. DEV. = -22.2 DEGREES REMARK 500 22 THR A 2 CA - CB - CG2 ANGL. DEV. = 14.2 DEGREES REMARK 500 22 THR A 2 O - C - N ANGL. DEV. = -18.8 DEGREES REMARK 500 22 CYS A 6 CA - C - N ANGL. DEV. = 23.9 DEGREES REMARK 500 22 CYS A 6 O - C - N ANGL. DEV. = -31.9 DEGREES REMARK 500 22 CYS A 7 C - N - CA ANGL. DEV. = 22.5 DEGREES REMARK 500 22 ARG A 8 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 22 ARG A 8 CG - CD - NE ANGL. DEV. = 17.1 DEGREES REMARK 500 22 ARG A 8 CD - NE - CZ ANGL. DEV. = 20.5 DEGREES REMARK 500 22 ARG A 8 NH1 - CZ - NH2 ANGL. DEV. = -38.5 DEGREES REMARK 500 22 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 20.4 DEGREES REMARK 500 22 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 18.1 DEGREES REMARK 500 22 GLN A 9 OE1 - CD - NE2 ANGL. DEV. = -23.0 DEGREES REMARK 500 22 GLN A 9 CG - CD - NE2 ANGL. DEV. = 23.8 DEGREES REMARK 500 22 GLN A 9 CA - C - N ANGL. DEV. = 25.9 DEGREES REMARK 500 22 GLN A 9 O - C - N ANGL. DEV. = -36.4 DEGREES REMARK 500 22 CYS A 10 C - N - CA ANGL. DEV. = 24.2 DEGREES REMARK 500 22 CYS A 10 CA - CB - SG ANGL. DEV. = 33.6 DEGREES REMARK 500 22 LYS A 11 CB - CG - CD ANGL. DEV. = 20.3 DEGREES REMARK 500 22 LYS A 11 CG - CD - CE ANGL. DEV. = 24.2 DEGREES REMARK 500 22 LYS A 11 CD - CE - NZ ANGL. DEV. = 28.8 DEGREES REMARK 500 22 LYS A 13 CB - CG - CD ANGL. DEV. = 46.0 DEGREES REMARK 500 22 LYS A 13 CG - CD - CE ANGL. DEV. = -20.8 DEGREES REMARK 500 22 LYS A 13 CD - CE - NZ ANGL. DEV. = -21.7 DEGREES REMARK 500 22 PRO A 14 O - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 22 GLY A 16 CA - C - N ANGL. DEV. = 20.3 DEGREES REMARK 500 22 GLY A 16 O - C - N ANGL. DEV. = -24.1 DEGREES REMARK 500 22 THR A 17 C - N - CA ANGL. DEV. = 19.4 DEGREES REMARK 500 22 THR A 18 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 22 THR A 18 O - C - N ANGL. DEV. = -21.9 DEGREES REMARK 500 22 TRP A 20 CB - CG - CD2 ANGL. DEV. = 30.6 DEGREES REMARK 500 22 TRP A 20 CD1 - CG - CD2 ANGL. DEV. = -57.2 DEGREES REMARK 500 22 TRP A 20 CB - CG - CD1 ANGL. DEV. = 26.8 DEGREES REMARK 500 22 TRP A 20 CG - CD1 - NE1 ANGL. DEV. = 37.9 DEGREES REMARK 500 22 TRP A 20 NE1 - CE2 - CZ2 ANGL. DEV. = -9.8 DEGREES REMARK 500 22 TRP A 20 CD2 - CE2 - CZ2 ANGL. DEV. = 36.5 DEGREES REMARK 500 22 TRP A 20 NE1 - CE2 - CD2 ANGL. DEV. = -26.8 DEGREES REMARK 500 22 TRP A 20 CE2 - CD2 - CG ANGL. DEV. = 43.2 DEGREES REMARK 500 22 TRP A 20 CG - CD2 - CE3 ANGL. DEV. = -44.4 DEGREES REMARK 500 22 TRP A 20 CD2 - CE3 - CZ3 ANGL. DEV. = -37.9 DEGREES REMARK 500 22 TRP A 20 CE3 - CZ3 - CH2 ANGL. DEV. = 38.2 DEGREES REMARK 500 22 TRP A 20 CH2 - CZ2 - CE2 ANGL. DEV. = -33.7 DEGREES REMARK 500 22 LYS A 21 CB - CG - CD ANGL. DEV. = 49.9 DEGREES REMARK 500 22 LYS A 21 CG - CD - CE ANGL. DEV. = 61.2 DEGREES REMARK 500 22 THR A 22 CA - C - N ANGL. DEV. = 28.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 115 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 60.29 -152.83 REMARK 500 1 CYS A 6 -62.30 44.91 REMARK 500 1 CYS A 7 104.59 -37.74 REMARK 500 1 ARG A 8 -42.40 84.16 REMARK 500 1 GLN A 9 -83.93 -77.84 REMARK 500 1 CYS A 10 64.98 -108.83 REMARK 500 1 LYS A 11 92.61 -166.27 REMARK 500 1 LYS A 13 160.13 -46.35 REMARK 500 1 PRO A 14 47.81 -75.05 REMARK 500 1 ALA A 15 99.32 50.65 REMARK 500 1 TRP A 20 -70.92 -106.36 REMARK 500 1 LYS A 21 130.16 69.74 REMARK 500 1 THR A 22 -73.59 -91.03 REMARK 500 1 SER A 23 40.91 155.18 REMARK 500 1 LEU A 24 -42.75 -168.74 REMARK 500 1 SER A 26 109.99 105.07 REMARK 500 1 TYR A 28 52.90 20.91 REMARK 500 1 CYS A 29 -123.04 165.24 REMARK 500 1 THR A 30 -18.34 157.70 REMARK 500 1 LYS A 32 -96.78 138.51 REMARK 500 1 ASP A 35 35.81 -174.78 REMARK 500 1 TYR A 39 93.41 170.42 REMARK 500 2 THR A 2 -14.81 174.14 REMARK 500 2 THR A 3 -123.70 -56.53 REMARK 500 2 CYS A 6 -48.86 57.72 REMARK 500 2 CYS A 7 100.17 -45.74 REMARK 500 2 ARG A 8 -23.06 88.37 REMARK 500 2 GLN A 9 -91.49 -91.40 REMARK 500 2 CYS A 10 64.35 -113.33 REMARK 500 2 LYS A 11 28.50 -149.63 REMARK 500 2 LYS A 13 160.64 -39.03 REMARK 500 2 PRO A 14 36.79 -74.98 REMARK 500 2 ALA A 15 133.18 60.53 REMARK 500 2 CYS A 19 54.99 36.56 REMARK 500 2 LYS A 21 117.77 71.92 REMARK 500 2 SER A 23 -10.80 94.83 REMARK 500 2 LEU A 24 -71.05 -115.95 REMARK 500 2 SER A 26 133.19 95.69 REMARK 500 2 TYR A 28 34.19 24.05 REMARK 500 2 CYS A 29 -172.23 160.23 REMARK 500 2 THR A 30 -42.34 -137.70 REMARK 500 2 LYS A 32 -75.74 76.91 REMARK 500 2 ASP A 35 75.97 168.85 REMARK 500 2 CYS A 36 136.01 170.89 REMARK 500 3 THR A 2 72.66 167.29 REMARK 500 3 THR A 3 -126.00 -143.41 REMARK 500 3 CYS A 6 104.03 -4.73 REMARK 500 3 CYS A 7 44.21 159.58 REMARK 500 3 ARG A 8 -13.48 149.55 REMARK 500 3 GLN A 9 -72.66 -140.09 REMARK 500 REMARK 500 THIS ENTRY HAS 477 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1MPZ A 1 41 UNP P83469 DISI_VIPLO 1 41 SEQRES 1 A 41 CYS THR THR GLY PRO CYS CYS ARG GLN CYS LYS LEU LYS SEQRES 2 A 41 PRO ALA GLY THR THR CYS TRP LYS THR SER LEU THR SER SEQRES 3 A 41 HIS TYR CYS THR GLY LYS SER CYS ASP CYS PRO LEU TYR SEQRES 4 A 41 PRO GLY SSBOND 1 CYS A 1 CYS A 10 1555 1555 1.88 SSBOND 2 CYS A 6 CYS A 29 1555 1555 1.98 SSBOND 3 CYS A 7 CYS A 34 1555 1555 1.90 SSBOND 4 CYS A 19 CYS A 36 1555 1555 1.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1