HEADER HYDROLASE 17-SEP-02 1MQR TITLE THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE (E386Q) FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS T-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-D-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.139; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: T-6; SOURCE 5 GENE: AGUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV,V.STOJANOFF, AUTHOR 2 A.THOMPSON,Y.SHOHAM,G.SHOHAM REVDAT 7 14-FEB-24 1MQR 1 REMARK REVDAT 6 27-OCT-21 1MQR 1 REMARK SEQADV REVDAT 5 13-JUL-11 1MQR 1 VERSN REVDAT 4 24-FEB-09 1MQR 1 VERSN REVDAT 3 27-JAN-04 1MQR 1 JRNL REVDAT 2 28-OCT-03 1MQR 1 SOURCE JRNL AUTHOR REVDAT 1 17-SEP-03 1MQR 0 JRNL AUTH G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV, JRNL AUTH 2 V.STOJANOFF,A.THOMPSON,Y.SHOHAM,G.SHOHAM JRNL TITL CRYSTAL STRUCTURES OF GEOBACILLUS STEAROTHERMOPHILUS JRNL TITL 2 {ALPHA}-GLUCURONIDASE COMPLEXED WITH ITS SUBSTRATE AND JRNL TITL 3 PRODUCTS: MECHANISTIC IMPLICATIONS. JRNL REF J.BIOL.CHEM. V. 279 3014 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14573597 JRNL DOI 10.1074/JBC.M310098200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.780 REMARK 3 FREE R VALUE TEST SET COUNT : 6108 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8557 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 960 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 466 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -2.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.160 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 42.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : GOL.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : GOL.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 203.4 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62425 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1MQP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% ISOPROPANOL, 14% PEG 4K, 0.1M NA REMARK 280 -CITRATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.44700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.76850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.76850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.22350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.76850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.76850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 246.67050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.76850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.76850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.22350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.76850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.76850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 246.67050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 164.44700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 328.89400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 176 REMARK 465 TYR A 322 REMARK 465 ASN A 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 679 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 287 O HOH A 1222 1.08 REMARK 500 O CYS A 324 N GLN A 325 1.67 REMARK 500 O ALA A 282 N ASP A 283 1.79 REMARK 500 O1 GOL A 705 O HOH A 1115 1.89 REMARK 500 O VAL A 202 NH1 ARG A 287 2.01 REMARK 500 CZ ARG A 287 O HOH A 1222 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 282 C ASP A 283 N -0.236 REMARK 500 SER A 284 C GLU A 285 N -0.308 REMARK 500 CYS A 324 C GLN A 325 N -0.308 REMARK 500 GLN A 325 C GLN A 326 N -0.304 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 282 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 ALA A 282 O - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 ASP A 283 CA - C - N ANGL. DEV. = -18.1 DEGREES REMARK 500 SER A 284 C - N - CA ANGL. DEV. = -22.3 DEGREES REMARK 500 PHE A 320 CA - C - N ANGL. DEV. = -17.5 DEGREES REMARK 500 PHE A 320 O - C - N ANGL. DEV. = 19.0 DEGREES REMARK 500 VAL A 321 C - N - CA ANGL. DEV. = -23.6 DEGREES REMARK 500 CYS A 324 CB - CA - C ANGL. DEV. = -30.6 DEGREES REMARK 500 CYS A 324 N - CA - C ANGL. DEV. = 51.6 DEGREES REMARK 500 CYS A 324 CA - C - N ANGL. DEV. = 17.8 DEGREES REMARK 500 CYS A 324 O - C - N ANGL. DEV. = -28.3 DEGREES REMARK 500 GLN A 325 N - CA - CB ANGL. DEV. = -11.3 DEGREES REMARK 500 GLN A 325 N - CA - C ANGL. DEV. = 26.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -127.26 57.01 REMARK 500 LEU A 10 56.17 -99.82 REMARK 500 MET A 363 -92.81 -104.97 REMARK 500 ASP A 364 78.37 -166.33 REMARK 500 GLN A 397 19.33 59.74 REMARK 500 SER A 422 51.76 -112.47 REMARK 500 TRP A 452 -42.32 68.63 REMARK 500 THR A 513 -137.66 -114.42 REMARK 500 TRP A 520 -129.38 56.95 REMARK 500 ASN A 531 80.56 -170.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 324 GLN A 325 113.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 282 -24.52 REMARK 500 ASP A 283 15.21 REMARK 500 CYS A 324 27.73 REMARK 500 GLN A 325 -12.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K9F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTATED FAMILY-67 ALPHA-D-GLUCURONIDASE REMARK 900 (E285N) FROM BACILLUS STEAROTHERMOPHILUS T-6, COMPLEXED WITH REMARK 900 ALDOTETRAOURONIC ACID REMARK 900 RELATED ID: 1K9E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTATED FAMILY-67 ALPHA-D-GLUCURONIDASE REMARK 900 (E285N) FROM BACILLUS STEAROTHERMOPHILUS T-6, COMPLEXED WITH 4-O- REMARK 900 METHYL-GLUCURONIC ACID REMARK 900 RELATED ID: 1K9D RELATED DB: PDB REMARK 900 THE 1.7 A CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE, A FAMILY-67 REMARK 900 GLYCOSIDE HYDROLASE FROM BACILLUS STEAROTHERMOPHILUS T-1 REMARK 900 RELATED ID: 1L8N RELATED DB: PDB REMARK 900 THE 1.5A CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS T-1, COMPLEXED WITH 4-O-METHYL-GLUCURONIC ACID REMARK 900 AND XYLOTRIOSE REMARK 900 RELATED ID: 1MQP RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS T-6 REMARK 900 RELATED ID: 1MQQ RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS T-1 COMPLEXED WITH GLUCURONIC ACID DBREF 1MQR A 1 679 UNP Q9ZFM3 Q9ZFM3_BACST 1 679 SEQADV 1MQR GLN A 386 UNP Q9ZFM3 GLU 386 ENGINEERED MUTATION SEQRES 1 A 679 MET THR ALA GLY TYR GLU PRO CYS TRP LEU ARG TYR GLU SEQRES 2 A 679 ARG LYS ASP GLN TYR SER ARG LEU ARG PHE GLU GLU ILE SEQRES 3 A 679 VAL ALA LYS ARG THR SER PRO ILE PHE GLN ALA VAL VAL SEQRES 4 A 679 GLU GLU LEU GLN LYS GLY LEU ARG SER MET MET GLU ILE SEQRES 5 A 679 GLU PRO GLN VAL VAL GLN GLU VAL ASN GLU THR ALA ASN SEQRES 6 A 679 SER ILE TRP LEU GLY THR LEU GLU ASP GLU GLU PHE GLU SEQRES 7 A 679 ARG PRO LEU GLU GLY THR LEU VAL HIS PRO GLU GLY TYR SEQRES 8 A 679 VAL ILE ARG SER ASP VAL ASP ASP GLY PRO PHE ARG ILE SEQRES 9 A 679 TYR ILE ILE GLY LYS THR ASP ALA GLY VAL LEU TYR GLY SEQRES 10 A 679 VAL PHE HIS PHE LEU ARG LEU LEU GLN MET GLY GLU ASN SEQRES 11 A 679 ILE ALA GLN LEU SER ILE ILE GLU GLN PRO LYS ASN ARG SEQRES 12 A 679 LEU ARG MET ILE ASN HIS TRP ASP ASN MET ASP GLY SER SEQRES 13 A 679 ILE GLU ARG GLY TYR ALA GLY ARG SER ILE PHE PHE VAL SEQRES 14 A 679 ASP ASP GLN PHE VAL LYS GLN ASN GLN ARG ILE LYS ASP SEQRES 15 A 679 TYR ALA ARG LEU LEU ALA SER VAL GLY ILE ASN ALA ILE SEQRES 16 A 679 SER ILE ASN ASN VAL ASN VAL HIS LYS THR GLU THR LYS SEQRES 17 A 679 LEU ILE THR ASP HIS PHE LEU PRO ASP VAL ALA GLU VAL SEQRES 18 A 679 ALA ASP ILE PHE ARG THR TYR GLY ILE LYS THR PHE LEU SEQRES 19 A 679 SER ILE ASN TYR ALA SER PRO ILE GLU ILE GLY GLY LEU SEQRES 20 A 679 PRO THR ALA ASP PRO LEU ASP PRO GLU VAL ARG ARG TRP SEQRES 21 A 679 TRP LYS GLU THR ALA LYS ARG ILE TYR GLN TYR ILE PRO SEQRES 22 A 679 ASP PHE GLY GLY PHE VAL VAL LYS ALA ASP SER GLU PHE SEQRES 23 A 679 ARG PRO GLY PRO PHE THR TYR GLY ARG ASP HIS ALA GLU SEQRES 24 A 679 GLY ALA ASN MET LEU ALA GLU ALA LEU ALA PRO PHE GLY SEQRES 25 A 679 GLY LEU VAL ILE TRP ARG CYS PHE VAL TYR ASN CYS GLN SEQRES 26 A 679 GLN ASP TRP ARG ASP ARG THR THR ASP ARG ALA LYS ALA SEQRES 27 A 679 ALA TYR ASP HIS PHE LYS PRO LEU ASP GLY GLN PHE ARG SEQRES 28 A 679 GLU ASN VAL ILE LEU GLN ILE LYS ASN GLY PRO MET ASP SEQRES 29 A 679 PHE GLN VAL ARG GLU PRO VAL SER PRO LEU PHE GLY ALA SEQRES 30 A 679 MET PRO LYS THR ASN GLN MET MET GLN VAL GLN ILE THR SEQRES 31 A 679 GLN GLU TYR THR GLY GLN GLN LYS HIS LEU CYS PHE LEU SEQRES 32 A 679 ILE PRO GLN TRP LYS GLU VAL LEU ASP PHE ASP THR TYR SEQRES 33 A 679 ALA LYS GLY LYS GLY SER GLU VAL LYS LYS VAL ILE ASP SEQRES 34 A 679 GLY SER LEU PHE ASP TYR ARG TYR SER GLY ILE ALA GLY SEQRES 35 A 679 VAL SER ASN ILE GLY SER ASP PRO ASN TRP THR GLY HIS SEQRES 36 A 679 THR LEU ALA GLN ALA ASN LEU TYR GLY PHE GLY ARG LEU SEQRES 37 A 679 ALA TRP ASN PRO ASP LEU SER ALA GLU GLU ILE ALA ASN SEQRES 38 A 679 GLU TRP VAL VAL GLN THR PHE GLY ASP ASP SER GLN VAL SEQRES 39 A 679 VAL GLU THR ILE SER TRP MET LEU LEU SER SER TRP ARG SEQRES 40 A 679 ILE TYR GLU ASN TYR THR SER PRO LEU GLY VAL GLY TRP SEQRES 41 A 679 MET VAL ASN PRO GLY HIS HIS TYR GLY PRO ASN VAL ASP SEQRES 42 A 679 GLY TYR GLU TYR SER HIS TRP GLY THR TYR HIS TYR ALA SEQRES 43 A 679 ASP ARG ASP GLY ILE GLY VAL ASP ARG THR VAL ALA THR SEQRES 44 A 679 GLY THR GLY TYR THR ALA GLN TYR PHE PRO GLU ASN ALA SEQRES 45 A 679 ALA MET TYR GLU SER LEU ASP THR CYS PRO ASP GLU LEU SEQRES 46 A 679 LEU LEU PHE PHE HIS HIS VAL PRO TYR THR HIS ARG LEU SEQRES 47 A 679 HIS SER GLY GLU THR VAL ILE GLN HIS ILE TYR ASN THR SEQRES 48 A 679 HIS PHE GLU GLY VAL GLU GLN ALA LYS GLN LEU ARG LYS SEQRES 49 A 679 ARG TRP GLU GLN LEU LYS GLY LYS ILE ASP GLU LYS ARG SEQRES 50 A 679 TYR HIS ASP VAL LEU GLU ARG LEU THR ILE GLN VAL GLU SEQRES 51 A 679 HIS ALA LYS GLU TRP ARG ASP VAL ILE ASN THR TYR PHE SEQRES 52 A 679 TYR ARG LYS SER GLY ILE ASP ASP GLN TYR GLY ARG LYS SEQRES 53 A 679 ILE TYR ARG HET GOL A 701 6 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 12 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 HOH *466(H2 O) HELIX 1 1 SER A 32 GLU A 51 1 20 HELIX 2 2 GLU A 73 GLU A 75 5 3 HELIX 3 3 ARG A 79 THR A 84 1 6 HELIX 4 4 THR A 110 MET A 127 1 18 HELIX 5 5 ASN A 177 VAL A 190 1 14 HELIX 6 6 HIS A 203 LYS A 208 1 6 HELIX 7 7 LEU A 209 THR A 211 5 3 HELIX 8 8 PHE A 214 TYR A 228 1 15 HELIX 9 9 ALA A 239 ILE A 244 1 6 HELIX 10 10 ASP A 254 ILE A 272 1 19 HELIX 11 11 GLY A 289 GLY A 294 5 6 HELIX 12 12 ASP A 296 ALA A 309 1 14 HELIX 13 13 PRO A 310 GLY A 312 5 3 HELIX 14 14 ASP A 334 ALA A 336 5 3 HELIX 15 15 LYS A 337 LYS A 344 1 8 HELIX 16 16 PRO A 345 ASP A 347 5 3 HELIX 17 17 LEU A 403 ASP A 412 1 10 HELIX 18 18 GLU A 423 ASP A 429 1 7 HELIX 19 19 HIS A 455 LEU A 457 5 3 HELIX 20 20 ALA A 458 ASN A 471 1 14 HELIX 21 21 SER A 475 GLY A 489 1 15 HELIX 22 22 ASP A 491 TYR A 512 1 22 HELIX 23 23 GLY A 562 TYR A 567 5 6 HELIX 24 24 PHE A 568 SER A 577 1 10 HELIX 25 25 PRO A 582 GLU A 584 5 3 HELIX 26 26 LEU A 585 HIS A 590 1 6 HELIX 27 27 THR A 603 GLN A 628 1 26 HELIX 28 28 ASP A 634 GLY A 668 1 35 SHEET 1 A 6 GLN A 55 VAL A 57 0 SHEET 2 A 6 GLU A 25 ALA A 28 1 N ILE A 26 O VAL A 57 SHEET 3 A 6 SER A 66 THR A 71 1 O LEU A 69 N VAL A 27 SHEET 4 A 6 ARG A 103 GLY A 108 1 O ILE A 104 N TRP A 68 SHEET 5 A 6 TYR A 91 SER A 95 -1 N VAL A 92 O ILE A 107 SHEET 6 A 6 SER A 135 GLU A 138 -1 O ILE A 136 N ILE A 93 SHEET 1 B 9 LEU A 144 ASN A 148 0 SHEET 2 B 9 ALA A 194 SER A 196 1 O SER A 196 N ILE A 147 SHEET 3 B 9 LYS A 231 ILE A 236 1 O PHE A 233 N ILE A 195 SHEET 4 B 9 GLY A 277 VAL A 280 1 O VAL A 279 N LEU A 234 SHEET 5 B 9 LEU A 314 ARG A 318 1 O ILE A 316 N PHE A 278 SHEET 6 B 9 VAL A 354 LYS A 359 1 O GLN A 357 N TRP A 317 SHEET 7 B 9 GLN A 383 GLN A 388 1 O MET A 384 N ILE A 358 SHEET 8 B 9 GLY A 439 VAL A 443 1 O ALA A 441 N MET A 385 SHEET 9 B 9 LEU A 144 ASN A 148 1 N ASN A 148 O GLY A 442 SHEET 1 C 2 PHE A 168 VAL A 169 0 SHEET 2 C 2 GLN A 172 PHE A 173 -1 O GLN A 172 N VAL A 169 SHEET 1 D 2 GLY A 550 ILE A 551 0 SHEET 2 D 2 VAL A 592 PRO A 593 -1 O VAL A 592 N ILE A 551 SITE 1 AC1 11 TYR A 91 TYR A 116 HIS A 120 ARG A 123 SITE 2 AC1 11 SER A 189 VAL A 190 GLY A 191 ARG A 467 SITE 3 AC1 11 TRP A 470 HOH A 857 HOH A 864 SITE 1 AC2 9 ARG A 368 GLU A 369 VAL A 371 GLU A 409 SITE 2 AC2 9 LEU A 585 HOH A 831 HOH A 901 HOH A1123 SITE 3 AC2 9 HOH A1132 SITE 1 AC3 6 SER A 19 GLU A 129 ILE A 131 HOH A 977 SITE 2 AC3 6 HOH A1087 HOH A1236 SITE 1 AC4 8 TYR A 340 LYS A 344 ALA A 377 ALA A 565 SITE 2 AC4 8 GLN A 566 TYR A 567 PHE A 568 HOH A1115 SITE 1 AC5 3 LYS A 620 LYS A 653 ARG A 656 CRYST1 73.537 73.537 328.894 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003040 0.00000