HEADER LYASE 19-SEP-02 1MSV TITLE THE S68A S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME PROCESSING TITLE 2 MUTANT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADOMETDC, SAMDC; COMPND 5 EC: 4.1.1.50; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL-1 BLUE/JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 (QIAGEN) KEYWDS SPERMIDINE BIOSYNTHESIS, LYASE, DECARBOXYLASE, PYRUVATE, S- KEYWDS 2 ADENOSYLMETHIONINE, SANDWICH, ALLOSTERIC ENZYME, PYRUVOYL EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT,Y.ZHANG,E.M.BENNETT,S.E.COTTET,J.L.EKSTROM,A.E.PEGG, AUTHOR 2 S.E.EALICK REVDAT 4 14-FEB-24 1MSV 1 REMARK REVDAT 3 27-OCT-21 1MSV 1 REMARK SEQADV REVDAT 2 24-FEB-09 1MSV 1 VERSN REVDAT 1 11-MAR-03 1MSV 0 JRNL AUTH W.D.TOLBERT,Y.ZHANG,S.E.COTTET,E.M.BENNETT,J.L.EKSTROM, JRNL AUTH 2 A.E.PEGG,S.E.EALICK JRNL TITL MECHANISM OF HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE JRNL TITL 2 PROENZYME PROCESSING AS REVEALED BY THE STRUCTURE OF THE JRNL TITL 3 S68A MUTANT. JRNL REF BIOCHEMISTRY V. 42 2386 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12600205 JRNL DOI 10.1021/BI0268854 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.EKSTROM,W.D.TOLBERT,H.XIONG,A.E.PEGG,S.E.EALICK REMARK 1 TITL STRUCTURE OF A HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE REMARK 1 TITL 2 SELF-PROCESSING ESTER INTERMEDIATE AND MECHANISM OF REMARK 1 TITL 3 PUTRESCINE STIMULATION OF PROCESSING AS REVEALED BY THE REMARK 1 TITL 4 H243A MUTANT REMARK 1 REF BIOCHEMISTRY V. 40 9495 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI010736O REMARK 1 REFERENCE 2 REMARK 1 AUTH W.D.TOLBERT,J.L.EKSTROM,I.I.MATHEWS,J.A.SECRIST III, REMARK 1 AUTH 2 P.KAPOOR,A.E.PEGG,S.E.EALICK REMARK 1 TITL THE STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY AND REMARK 1 TITL 2 INHIBITION OF HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE. REMARK 1 REF BIOCHEMISTRY V. 40 9484 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI010735W REMARK 1 REFERENCE 3 REMARK 1 AUTH J.L.EKSTROM,I.I.MATHEWS,B.A.STANLEY,A.E.PEGG,S.E.EALICK REMARK 1 TITL THE CRYSTAL STRUCTURE OF HUMAN S-ADENOSYLMETHIONINE REMARK 1 TITL 2 DECARBOXYLASE AT 2.25 A RESOLUTION REVEALS A NOVEL FOLD. REMARK 1 REF STRUCTURE V. 7 583 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(99)80074-4 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 76221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7623 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11181 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1227 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5157 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.91000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 6.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.440 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.020 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.490 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 34.20 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEINMAOTST5.PARAM REMARK 3 PARAMETER FILE 2 : TRIS.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEINMAOTST5.TOP REMARK 3 TOPOLOGY FILE 2 : TRIS.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1I76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, REMARK 280 TRIS[HYDROXYMETHYL]AMINOMETHANE, DITHIOTHREITOL, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.19100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROENZYME IS A DIMER AND THE DIMER REMARK 300 IS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 22 REMARK 465 PRO A 23 REMARK 465 ASP A 24 REMARK 465 ALA A 25 REMARK 465 ASN A 26 REMARK 465 GLN A 27 REMARK 465 GLN A 329 REMARK 465 GLN A 330 REMARK 465 GLN A 331 REMARK 465 GLN A 332 REMARK 465 GLN A 333 REMARK 465 SER A 334 REMARK 465 HIS A 335 REMARK 465 ILE A 336 REMARK 465 CYS A 337 REMARK 465 ARG A 338 REMARK 465 SER A 339 REMARK 465 GLN A 340 REMARK 465 MET A 341 REMARK 465 VAL A 342 REMARK 465 THR A 343 REMARK 465 SER A 344 REMARK 465 GLN A 345 REMARK 465 GLN A 346 REMARK 465 THR A 347 REMARK 465 SER A 348 REMARK 465 SER A 349 REMARK 465 VAL A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 352 REMARK 465 GLN A 353 REMARK 465 THR A 354 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ALA B 3 REMARK 465 GLN B 22 REMARK 465 PRO B 23 REMARK 465 ASP B 24 REMARK 465 ALA B 25 REMARK 465 ASN B 26 REMARK 465 GLN B 329 REMARK 465 GLN B 330 REMARK 465 GLN B 331 REMARK 465 GLN B 332 REMARK 465 GLN B 333 REMARK 465 SER B 334 REMARK 465 HIS B 335 REMARK 465 ILE B 336 REMARK 465 CYS B 337 REMARK 465 ARG B 338 REMARK 465 SER B 339 REMARK 465 GLN B 340 REMARK 465 MET B 341 REMARK 465 VAL B 342 REMARK 465 THR B 343 REMARK 465 SER B 344 REMARK 465 GLN B 345 REMARK 465 GLN B 346 REMARK 465 THR B 347 REMARK 465 SER B 348 REMARK 465 SER B 349 REMARK 465 VAL B 350 REMARK 465 VAL B 351 REMARK 465 ARG B 352 REMARK 465 GLN B 353 REMARK 465 THR B 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 126 33.72 -96.86 REMARK 500 SER A 154 -142.63 -146.92 REMARK 500 GLU A 166 99.26 45.00 REMARK 500 ARG A 168 20.32 46.32 REMARK 500 PHE A 250 38.96 -157.78 REMARK 500 ARG A 293 59.88 -113.93 REMARK 500 THR A 294 30.24 -160.36 REMARK 500 LEU A 296 32.24 -90.19 REMARK 500 SER A 298 93.68 58.18 REMARK 500 SER B 73 -167.61 -114.84 REMARK 500 SER B 154 -142.59 -151.96 REMARK 500 PRO B 165 -108.80 -64.82 REMARK 500 PHE B 250 40.69 -155.74 REMARK 500 ARG B 293 -59.16 65.19 REMARK 500 ARG B 293 -61.04 66.72 REMARK 500 VAL B 295 -54.21 -148.43 REMARK 500 SER B 298 99.97 63.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PUT A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PUT B 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JEN RELATED DB: PDB REMARK 900 THE ORGINAL STRUCTURE DETERMINATION OF S-ADENOSYLMETHIONINE REMARK 900 DECARBOXYLASE. REMARK 900 RELATED ID: 1JL0 RELATED DB: PDB REMARK 900 H243A ESTER INTERMEDIATE PROCESSING MUTANT OF S-ADENOSYLMETHIONINE REMARK 900 DECARBOXYLASE. REMARK 900 RELATED ID: 1I7B RELATED DB: PDB REMARK 900 S-ADENOSYLMETHIONINE DECARBOXYLASE S-ADENOSYLMETHIONINE METHYL REMARK 900 ESTER COMPLEX. REMARK 900 RELATED ID: 1I72 RELATED DB: PDB REMARK 900 S-ADENOSYLMETHIONINE DECARBOXYLASE 5'-DEOXY-5'-[N-METHYL-N-(2- REMARK 900 AMINOOXYETHYL)AMINO]ADENOSINE COMPLEX. REMARK 900 RELATED ID: 1I79 RELATED DB: PDB REMARK 900 S-ADENOSYLMETHIONINE DECARBOXYLASE 5'-DEOXY-5'-[(3-HYDRAZINOPROPYL) REMARK 900 METHYLAMINO]ADENOSINE COMPLEX. REMARK 900 RELATED ID: 1I76 RELATED DB: PDB REMARK 900 S-ADENOSYLMETHIONINE DECARBOXYLASE METHYLGLYOXAL BIS- REMARK 900 (GUANYLHYDRAZONE) REMARK 900 RELATED ID: 1I7M RELATED DB: PDB REMARK 900 S-ADENOSYLMETHIONINE DECARBOXYLASE 4-AMIDINOINDAN-1-ONE-2'- REMARK 900 AMIDINOHYDRAZONE COMPLEX DBREF 1MSV A 1 334 UNP P17707 DCAM_HUMAN 1 334 DBREF 1MSV B 1 334 UNP P17707 DCAM_HUMAN 1 334 SEQADV 1MSV ALA A 68 UNP P17707 SER 68 ENGINEERED MUTATION SEQADV 1MSV HIS A 335 UNP P17707 CLONING ARTIFACT SEQADV 1MSV ILE A 336 UNP P17707 CLONING ARTIFACT SEQADV 1MSV CYS A 337 UNP P17707 CLONING ARTIFACT SEQADV 1MSV ARG A 338 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER A 339 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN A 330 UNP P17707 CLONING ARTIFACT SEQADV 1MSV MET A 341 UNP P17707 CLONING ARTIFACT SEQADV 1MSV VAL A 342 UNP P17707 CLONING ARTIFACT SEQADV 1MSV THR A 343 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER A 344 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN A 345 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN A 346 UNP P17707 CLONING ARTIFACT SEQADV 1MSV THR A 347 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER A 348 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER A 349 UNP P17707 CLONING ARTIFACT SEQADV 1MSV VAL A 350 UNP P17707 CLONING ARTIFACT SEQADV 1MSV VAL A 351 UNP P17707 CLONING ARTIFACT SEQADV 1MSV ARG A 352 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN A 353 UNP P17707 CLONING ARTIFACT SEQADV 1MSV THR A 354 UNP P17707 CLONING ARTIFACT SEQADV 1MSV ALA B 68 UNP P17707 SER 68 ENGINEERED MUTATION SEQADV 1MSV HIS B 335 UNP P17707 CLONING ARTIFACT SEQADV 1MSV ILE B 336 UNP P17707 CLONING ARTIFACT SEQADV 1MSV CYS B 337 UNP P17707 CLONING ARTIFACT SEQADV 1MSV ARG B 338 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER B 339 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN B 340 UNP P17707 CLONING ARTIFACT SEQADV 1MSV MET B 341 UNP P17707 CLONING ARTIFACT SEQADV 1MSV VAL B 342 UNP P17707 CLONING ARTIFACT SEQADV 1MSV THR B 343 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER B 344 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN B 345 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN B 346 UNP P17707 CLONING ARTIFACT SEQADV 1MSV THR B 347 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER B 348 UNP P17707 CLONING ARTIFACT SEQADV 1MSV SER B 349 UNP P17707 CLONING ARTIFACT SEQADV 1MSV VAL B 350 UNP P17707 CLONING ARTIFACT SEQADV 1MSV VAL B 351 UNP P17707 CLONING ARTIFACT SEQADV 1MSV ARG B 352 UNP P17707 CLONING ARTIFACT SEQADV 1MSV GLN B 353 UNP P17707 CLONING ARTIFACT SEQADV 1MSV THR B 354 UNP P17707 CLONING ARTIFACT SEQRES 1 A 354 MET GLU ALA ALA HIS PHE PHE GLU GLY THR GLU LYS LEU SEQRES 2 A 354 LEU GLU VAL TRP PHE SER ARG GLN GLN PRO ASP ALA ASN SEQRES 3 A 354 GLN GLY SER GLY ASP LEU ARG THR ILE PRO ARG SER GLU SEQRES 4 A 354 TRP ASP ILE LEU LEU LYS ASP VAL GLN CYS SER ILE ILE SEQRES 5 A 354 SER VAL THR LYS THR ASP LYS GLN GLU ALA TYR VAL LEU SEQRES 6 A 354 SER GLU ALA SER MET PHE VAL SER LYS ARG ARG PHE ILE SEQRES 7 A 354 LEU LYS THR CYS GLY THR THR LEU LEU LEU LYS ALA LEU SEQRES 8 A 354 VAL PRO LEU LEU LYS LEU ALA ARG ASP TYR SER GLY PHE SEQRES 9 A 354 ASP SER ILE GLN SER PHE PHE TYR SER ARG LYS ASN PHE SEQRES 10 A 354 MET LYS PRO SER HIS GLN GLY TYR PRO HIS ARG ASN PHE SEQRES 11 A 354 GLN GLU GLU ILE GLU PHE LEU ASN ALA ILE PHE PRO ASN SEQRES 12 A 354 GLY ALA ALA TYR CYS MET GLY ARG MET ASN SER ASP CYS SEQRES 13 A 354 TRP TYR LEU TYR THR LEU ASP PHE PRO GLU SER ARG VAL SEQRES 14 A 354 ILE SER GLN PRO ASP GLN THR LEU GLU ILE LEU MET SER SEQRES 15 A 354 GLU LEU ASP PRO ALA VAL MET ASP GLN PHE TYR MET LYS SEQRES 16 A 354 ASP GLY VAL THR ALA LYS ASP VAL THR ARG GLU SER GLY SEQRES 17 A 354 ILE ARG ASP LEU ILE PRO GLY SER VAL ILE ASP ALA THR SEQRES 18 A 354 MET PHE ASN PRO CYS GLY TYR SER MET ASN GLY MET LYS SEQRES 19 A 354 SER ASP GLY THR TYR TRP THR ILE HIS ILE THR PRO GLU SEQRES 20 A 354 PRO GLU PHE SER TYR VAL SER PHE GLU THR ASN LEU SER SEQRES 21 A 354 GLN THR SER TYR ASP ASP LEU ILE ARG LYS VAL VAL GLU SEQRES 22 A 354 VAL PHE LYS PRO GLY LYS PHE VAL THR THR LEU PHE VAL SEQRES 23 A 354 ASN GLN SER SER LYS CYS ARG THR VAL LEU ALA SER PRO SEQRES 24 A 354 GLN LYS ILE GLU GLY PHE LYS ARG LEU ASP CYS GLN SER SEQRES 25 A 354 ALA MET PHE ASN ASP TYR ASN PHE VAL PHE THR SER PHE SEQRES 26 A 354 ALA LYS LYS GLN GLN GLN GLN GLN SER HIS ILE CYS ARG SEQRES 27 A 354 SER GLN MET VAL THR SER GLN GLN THR SER SER VAL VAL SEQRES 28 A 354 ARG GLN THR SEQRES 1 B 354 MET GLU ALA ALA HIS PHE PHE GLU GLY THR GLU LYS LEU SEQRES 2 B 354 LEU GLU VAL TRP PHE SER ARG GLN GLN PRO ASP ALA ASN SEQRES 3 B 354 GLN GLY SER GLY ASP LEU ARG THR ILE PRO ARG SER GLU SEQRES 4 B 354 TRP ASP ILE LEU LEU LYS ASP VAL GLN CYS SER ILE ILE SEQRES 5 B 354 SER VAL THR LYS THR ASP LYS GLN GLU ALA TYR VAL LEU SEQRES 6 B 354 SER GLU ALA SER MET PHE VAL SER LYS ARG ARG PHE ILE SEQRES 7 B 354 LEU LYS THR CYS GLY THR THR LEU LEU LEU LYS ALA LEU SEQRES 8 B 354 VAL PRO LEU LEU LYS LEU ALA ARG ASP TYR SER GLY PHE SEQRES 9 B 354 ASP SER ILE GLN SER PHE PHE TYR SER ARG LYS ASN PHE SEQRES 10 B 354 MET LYS PRO SER HIS GLN GLY TYR PRO HIS ARG ASN PHE SEQRES 11 B 354 GLN GLU GLU ILE GLU PHE LEU ASN ALA ILE PHE PRO ASN SEQRES 12 B 354 GLY ALA ALA TYR CYS MET GLY ARG MET ASN SER ASP CYS SEQRES 13 B 354 TRP TYR LEU TYR THR LEU ASP PHE PRO GLU SER ARG VAL SEQRES 14 B 354 ILE SER GLN PRO ASP GLN THR LEU GLU ILE LEU MET SER SEQRES 15 B 354 GLU LEU ASP PRO ALA VAL MET ASP GLN PHE TYR MET LYS SEQRES 16 B 354 ASP GLY VAL THR ALA LYS ASP VAL THR ARG GLU SER GLY SEQRES 17 B 354 ILE ARG ASP LEU ILE PRO GLY SER VAL ILE ASP ALA THR SEQRES 18 B 354 MET PHE ASN PRO CYS GLY TYR SER MET ASN GLY MET LYS SEQRES 19 B 354 SER ASP GLY THR TYR TRP THR ILE HIS ILE THR PRO GLU SEQRES 20 B 354 PRO GLU PHE SER TYR VAL SER PHE GLU THR ASN LEU SER SEQRES 21 B 354 GLN THR SER TYR ASP ASP LEU ILE ARG LYS VAL VAL GLU SEQRES 22 B 354 VAL PHE LYS PRO GLY LYS PHE VAL THR THR LEU PHE VAL SEQRES 23 B 354 ASN GLN SER SER LYS CYS ARG THR VAL LEU ALA SER PRO SEQRES 24 B 354 GLN LYS ILE GLU GLY PHE LYS ARG LEU ASP CYS GLN SER SEQRES 25 B 354 ALA MET PHE ASN ASP TYR ASN PHE VAL PHE THR SER PHE SEQRES 26 B 354 ALA LYS LYS GLN GLN GLN GLN GLN SER HIS ILE CYS ARG SEQRES 27 B 354 SER GLN MET VAL THR SER GLN GLN THR SER SER VAL VAL SEQRES 28 B 354 ARG GLN THR HET PUT A 355 6 HET TRS A 500 8 HET PUT B 355 6 HET TRS B 501 8 HETNAM PUT 1,4-DIAMINOBUTANE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN PUT PUTRESCINE HETSYN TRS TRIS BUFFER FORMUL 3 PUT 2(C4 H12 N2) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 7 HOH *306(H2 O) HELIX 1 1 ASP A 31 ILE A 35 5 5 HELIX 2 2 PRO A 36 VAL A 47 1 12 HELIX 3 3 LEU A 86 LYS A 89 5 4 HELIX 4 4 ALA A 90 TYR A 101 1 12 HELIX 5 5 LYS A 119 GLN A 123 5 5 HELIX 6 6 ASN A 129 ALA A 139 1 11 HELIX 7 7 ASP A 185 ASP A 190 1 6 HELIX 8 8 GLN A 191 TYR A 193 5 3 HELIX 9 9 THR A 199 SER A 207 1 9 HELIX 10 10 ILE A 209 ILE A 213 5 5 HELIX 11 11 TYR A 264 LYS A 276 1 13 HELIX 12 12 ASP B 31 ILE B 35 5 5 HELIX 13 13 PRO B 36 ASP B 46 1 11 HELIX 14 14 LEU B 86 LYS B 89 5 4 HELIX 15 15 ALA B 90 GLY B 103 1 14 HELIX 16 16 LYS B 119 GLN B 123 5 5 HELIX 17 17 ASN B 129 ALA B 139 1 11 HELIX 18 18 ASP B 185 ASP B 190 1 6 HELIX 19 19 GLN B 191 TYR B 193 5 3 HELIX 20 20 THR B 199 SER B 207 1 9 HELIX 21 21 ILE B 209 ILE B 213 5 5 HELIX 22 22 TYR B 264 LYS B 276 1 13 SHEET 1 A 8 ILE A 51 LYS A 56 0 SHEET 2 A 8 GLN A 60 LEU A 65 -1 O ALA A 62 N THR A 55 SHEET 3 A 8 ALA A 68 SER A 73 -1 O MET A 70 N TYR A 63 SHEET 4 A 8 ARG A 76 THR A 81 -1 O LYS A 80 N SER A 69 SHEET 5 A 8 LYS A 12 SER A 19 -1 N LEU A 14 O LEU A 79 SHEET 6 A 8 SER A 106 LYS A 115 -1 O SER A 109 N TRP A 17 SHEET 7 A 8 CYS A 156 LEU A 162 -1 O TYR A 158 N ARG A 114 SHEET 8 A 8 GLY A 144 GLY A 150 -1 N MET A 149 O TRP A 157 SHEET 1 B16 VAL A 217 MET A 222 0 SHEET 2 B16 TYR A 228 MET A 233 -1 O SER A 229 N THR A 221 SHEET 3 B16 TYR A 239 THR A 245 -1 O ILE A 244 N TYR A 228 SHEET 4 B16 TYR A 252 THR A 257 -1 O TYR A 252 N THR A 245 SHEET 5 B16 GLN A 175 SER A 182 -1 N MET A 181 O VAL A 253 SHEET 6 B16 LYS A 279 ASN A 287 -1 O LYS A 279 N SER A 182 SHEET 7 B16 TYR A 318 LYS A 327 -1 O ASN A 319 N VAL A 286 SHEET 8 B16 PHE A 305 MET A 314 -1 N GLN A 311 O PHE A 322 SHEET 9 B16 PHE B 305 MET B 314 -1 O SER B 312 N SER A 312 SHEET 10 B16 TYR B 318 LYS B 327 -1 O PHE B 322 N GLN B 311 SHEET 11 B16 LYS B 279 ASN B 287 -1 N PHE B 280 O PHE B 325 SHEET 12 B16 GLN B 175 SER B 182 -1 N LEU B 180 O VAL B 281 SHEET 13 B16 TYR B 252 THR B 257 -1 O VAL B 253 N MET B 181 SHEET 14 B16 TYR B 239 THR B 245 -1 N THR B 245 O TYR B 252 SHEET 15 B16 TYR B 228 MET B 233 -1 N TYR B 228 O ILE B 244 SHEET 16 B16 VAL B 217 MET B 222 -1 N VAL B 217 O MET B 233 SHEET 1 C 8 ILE B 51 LYS B 56 0 SHEET 2 C 8 GLN B 60 LEU B 65 -1 O ALA B 62 N THR B 55 SHEET 3 C 8 ALA B 68 SER B 73 -1 O MET B 70 N TYR B 63 SHEET 4 C 8 ARG B 76 THR B 81 -1 O LYS B 80 N SER B 69 SHEET 5 C 8 LYS B 12 SER B 19 -1 N LEU B 14 O LEU B 79 SHEET 6 C 8 SER B 106 LYS B 115 -1 O SER B 109 N TRP B 17 SHEET 7 C 8 CYS B 156 LEU B 162 -1 O TYR B 158 N ARG B 114 SHEET 8 C 8 GLY B 144 GLY B 150 -1 N MET B 149 O TRP B 157 CISPEP 1 TYR A 125 PRO A 126 0 -0.08 CISPEP 2 ASN A 224 PRO A 225 0 0.04 CISPEP 3 TYR B 125 PRO B 126 0 0.02 CISPEP 4 ASN B 224 PRO B 225 0 0.18 SITE 1 AC1 9 LEU A 13 GLU A 15 PHE A 111 ASP A 174 SITE 2 AC1 9 THR A 176 TYR A 318 HOH A 631 HOH A 665 SITE 3 AC1 9 HOH A 784 SITE 1 AC2 9 LEU B 13 GLU B 15 PHE B 111 ASP B 174 SITE 2 AC2 9 THR B 176 TYR B 318 HOH B 661 HOH B 699 SITE 3 AC2 9 HOH B 763 SITE 1 AC3 7 HIS A 5 PHE A 7 GLU A 67 CYS A 226 SITE 2 AC3 7 PRO A 246 GLU A 247 HOH A 672 SITE 1 AC4 7 HIS B 5 PHE B 7 GLU B 67 CYS B 226 SITE 2 AC4 7 PRO B 246 GLU B 247 HOH B 715 CRYST1 73.936 56.382 99.190 90.00 110.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013525 0.000000 0.005184 0.00000 SCALE2 0.000000 0.017736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010797 0.00000