HEADER TRANSPORT PROTEIN 25-SEP-02 1MVG TITLE NMR SOLUTION STRUCTURE OF CHICKEN LIVER BASIC FATTY ACID BINDING TITLE 2 PROTEIN (LB-FABP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIVER BASIC FATTY ACID BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-FABP, LIVER BASIC FABP, LB-FABP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: LIVER; SOURCE 6 OTHER_DETAILS: PURIFIED FROM CHICKEN LIVER KEYWDS BETA-BARREL, CALYCIN, TEN ANTIPARALLEL BETA STRANDS, HELIX-TURN-HELIX KEYWDS 2 MOTIF, FATTY ACID BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.VASILE,L.RAGONA,M.CATALANO,L.ZETTA,M.PERDUCA,H.MONACO,H.MOLINARI REVDAT 4 23-FEB-22 1MVG 1 REMARK REVDAT 3 24-FEB-09 1MVG 1 VERSN REVDAT 2 09-AUG-05 1MVG 1 DBREF REVDAT 1 04-MAR-03 1MVG 0 JRNL AUTH F.VASILE,L.RAGONA,M.CATALANO,L.ZETTA,M.PERDUCA,H.MONACO, JRNL AUTH 2 H.MOLINARI JRNL TITL SOLUTION STRUCTURE OF CHICKEN LIVER BASIC TYPE FATTY ACID JRNL TITL 2 BINDING PROTEIN JRNL REF J.BIOMOL.NMR V. 25 157 2003 JRNL REFN ISSN 0925-2738 JRNL PMID 12652125 JRNL DOI 10.1023/A:1022277727303 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, DYANA 1.5, DISCOVER 1998 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT (DYANA), MSI (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1293 NON REDUNDANT RESTRAINTS, 1179 ARE NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 64 DIHEDRAL ANGLE RESTARINTS, 50 DISTANCE REMARK 3 RESTRAINTS FROM HYDROGEN BONDS REMARK 4 REMARK 4 1MVG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017218. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310 REMARK 210 PH : 5.6; 5.6 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE BUFFER NA; 20MM REMARK 210 PHOSPHATE BUFFER NA REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM LIVER BASIC FATTY ACID REMARK 210 BINDING PROTEIN; 20MM PHOSPHATE REMARK 210 BUFFER; 1MM LIVER BASIC FATTY REMARK 210 ACID BINDING PROTEIN; 20MM REMARK 210 PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, MOLMOL 2K.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS SIMULATED REMARK 210 ANNEALING ENERGY MINIMISATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 12 CD GLU A 12 OE2 0.110 REMARK 500 1 GLU A 15 CD GLU A 15 OE2 0.111 REMARK 500 1 GLU A 16 CD GLU A 16 OE2 0.113 REMARK 500 1 GLU A 25 CD GLU A 25 OE2 0.112 REMARK 500 1 GLU A 39 CD GLU A 39 OE2 0.111 REMARK 500 1 GLU A 67 CD GLU A 67 OE2 0.112 REMARK 500 1 GLU A 94 CD GLU A 94 OE2 0.111 REMARK 500 1 GLU A 99 CD GLU A 99 OE2 0.111 REMARK 500 1 GLU A 101 CD GLU A 101 OE2 0.113 REMARK 500 1 GLU A 106 CD GLU A 106 OE2 0.112 REMARK 500 1 GLU A 109 CD GLU A 109 OE2 0.112 REMARK 500 2 GLU A 12 CD GLU A 12 OE2 0.111 REMARK 500 2 GLU A 15 CD GLU A 15 OE2 0.111 REMARK 500 2 GLU A 16 CD GLU A 16 OE2 0.111 REMARK 500 2 GLU A 25 CD GLU A 25 OE2 0.111 REMARK 500 2 GLU A 39 CD GLU A 39 OE2 0.112 REMARK 500 2 GLU A 67 CD GLU A 67 OE2 0.111 REMARK 500 2 GLU A 94 CD GLU A 94 OE2 0.110 REMARK 500 2 GLU A 99 CD GLU A 99 OE2 0.111 REMARK 500 2 GLU A 101 CD GLU A 101 OE2 0.111 REMARK 500 2 GLU A 106 CD GLU A 106 OE2 0.111 REMARK 500 2 GLU A 109 CD GLU A 109 OE2 0.112 REMARK 500 3 GLU A 12 CD GLU A 12 OE2 0.111 REMARK 500 3 GLU A 15 CD GLU A 15 OE2 0.110 REMARK 500 3 GLU A 16 CD GLU A 16 OE2 0.112 REMARK 500 3 GLU A 25 CD GLU A 25 OE2 0.111 REMARK 500 3 GLU A 39 CD GLU A 39 OE2 0.112 REMARK 500 3 GLU A 67 CD GLU A 67 OE2 0.112 REMARK 500 3 GLU A 94 CD GLU A 94 OE2 0.113 REMARK 500 3 GLU A 99 CD GLU A 99 OE2 0.112 REMARK 500 3 GLU A 101 CD GLU A 101 OE2 0.111 REMARK 500 3 GLU A 106 CD GLU A 106 OE2 0.111 REMARK 500 3 GLU A 109 CD GLU A 109 OE2 0.110 REMARK 500 4 GLU A 12 CD GLU A 12 OE2 0.111 REMARK 500 4 GLU A 15 CD GLU A 15 OE2 0.112 REMARK 500 4 GLU A 16 CD GLU A 16 OE2 0.110 REMARK 500 4 GLU A 25 CD GLU A 25 OE2 0.112 REMARK 500 4 GLU A 39 CD GLU A 39 OE2 0.111 REMARK 500 4 GLU A 67 CD GLU A 67 OE2 0.110 REMARK 500 4 GLU A 94 CD GLU A 94 OE2 0.112 REMARK 500 4 GLU A 99 CD GLU A 99 OE2 0.112 REMARK 500 4 GLU A 101 CD GLU A 101 OE2 0.113 REMARK 500 4 GLU A 106 CD GLU A 106 OE2 0.111 REMARK 500 4 GLU A 109 CD GLU A 109 OE2 0.112 REMARK 500 5 GLU A 12 CD GLU A 12 OE2 0.111 REMARK 500 5 GLU A 15 CD GLU A 15 OE2 0.112 REMARK 500 5 GLU A 16 CD GLU A 16 OE2 0.112 REMARK 500 5 GLU A 25 CD GLU A 25 OE2 0.113 REMARK 500 5 GLU A 39 CD GLU A 39 OE2 0.111 REMARK 500 5 GLU A 67 CD GLU A 67 OE2 0.112 REMARK 500 REMARK 500 THIS ENTRY HAS 110 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 43 59.54 -151.33 REMARK 500 1 ASP A 45 -43.96 76.93 REMARK 500 1 ARG A 55 -41.89 -162.35 REMARK 500 1 ALA A 85 -134.02 -111.08 REMARK 500 1 SER A 93 -160.61 -125.27 REMARK 500 2 SER A 3 75.63 50.77 REMARK 500 2 ARG A 32 -70.69 -69.45 REMARK 500 2 LYS A 43 56.25 -147.70 REMARK 500 2 PRO A 54 40.42 -80.19 REMARK 500 2 ARG A 55 -50.72 -142.94 REMARK 500 2 THR A 72 -80.64 -65.03 REMARK 500 2 MET A 73 -66.40 -150.58 REMARK 500 2 ASP A 74 -71.64 -68.65 REMARK 500 2 LYS A 95 -23.00 178.51 REMARK 500 2 LYS A 103 -155.09 -125.12 REMARK 500 3 LEU A 21 -71.82 -68.78 REMARK 500 3 ALA A 22 -54.53 -174.47 REMARK 500 3 THR A 72 -177.64 -64.77 REMARK 500 3 ASP A 74 83.91 62.43 REMARK 500 3 ASN A 86 78.10 -156.96 REMARK 500 3 SER A 93 -168.60 -126.16 REMARK 500 3 LYS A 95 -37.12 -133.75 REMARK 500 4 LYS A 43 58.04 -147.05 REMARK 500 4 GLN A 56 79.82 -166.21 REMARK 500 4 MET A 73 -69.15 -174.16 REMARK 500 4 ASN A 86 83.82 -161.66 REMARK 500 5 PHE A 2 -55.18 -152.26 REMARK 500 5 SER A 3 100.29 -52.92 REMARK 500 5 ASN A 13 -35.66 72.31 REMARK 500 5 ALA A 22 -58.31 -167.99 REMARK 500 5 THR A 72 -177.35 -67.22 REMARK 500 5 ALA A 85 49.30 -150.63 REMARK 500 5 ASN A 86 95.41 68.09 REMARK 500 5 SER A 93 -149.03 -141.71 REMARK 500 5 GLU A 94 -73.92 -75.64 REMARK 500 5 HIS A 98 -145.74 180.00 REMARK 500 5 PHE A 113 80.68 -150.81 REMARK 500 6 ASN A 13 89.96 59.24 REMARK 500 6 TYR A 14 -51.41 -148.64 REMARK 500 6 ALA A 22 -65.62 -168.11 REMARK 500 6 MET A 30 46.75 -96.20 REMARK 500 6 ALA A 31 -52.07 -156.90 REMARK 500 6 LYS A 43 42.09 -140.85 REMARK 500 6 ASP A 45 18.52 57.29 REMARK 500 6 GLN A 56 173.32 127.83 REMARK 500 6 THR A 72 47.44 -149.09 REMARK 500 6 MET A 73 56.57 -148.05 REMARK 500 6 THR A 81 61.31 -116.26 REMARK 500 6 ALA A 85 -68.38 -93.28 REMARK 500 6 ASN A 86 88.52 -164.51 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 PHE A 47 0.14 SIDE CHAIN REMARK 500 2 ARG A 124 0.09 SIDE CHAIN REMARK 500 3 TYR A 14 0.08 SIDE CHAIN REMARK 500 4 TYR A 14 0.08 SIDE CHAIN REMARK 500 6 PHE A 96 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MVG A 1 125 UNP P80226 FABPL_CHICK 1 125 SEQRES 1 A 125 ALA PHE SER GLY THR TRP GLN VAL TYR ALA GLN GLU ASN SEQRES 2 A 125 TYR GLU GLU PHE LEU LYS ALA LEU ALA LEU PRO GLU ASP SEQRES 3 A 125 LEU ILE LYS MET ALA ARG ASP ILE LYS PRO ILE VAL GLU SEQRES 4 A 125 ILE GLN GLN LYS GLY ASP ASP PHE VAL VAL THR SER LYS SEQRES 5 A 125 THR PRO ARG GLN THR VAL THR ASN SER PHE THR LEU GLY SEQRES 6 A 125 LYS GLU ALA ASP ILE THR THR MET ASP GLY LYS LYS LEU SEQRES 7 A 125 LYS CYS THR VAL HIS LEU ALA ASN GLY LYS LEU VAL THR SEQRES 8 A 125 LYS SER GLU LYS PHE SER HIS GLU GLN GLU VAL LYS GLY SEQRES 9 A 125 ASN GLU MET VAL GLU THR ILE THR PHE GLY GLY VAL THR SEQRES 10 A 125 LEU ILE ARG ARG SER LYS ARG VAL HELIX 1 1 ASN A 13 LEU A 21 1 9 HELIX 2 2 PRO A 24 ASP A 33 1 10 SHEET 1 A10 THR A 57 THR A 63 0 SHEET 2 A10 ASP A 46 LYS A 52 -1 N VAL A 49 O ASN A 60 SHEET 3 A10 ILE A 37 LYS A 43 -1 N GLU A 39 O THR A 50 SHEET 4 A10 GLY A 4 GLU A 12 -1 N TRP A 6 O VAL A 38 SHEET 5 A10 VAL A 116 VAL A 125 -1 O LYS A 123 N GLN A 7 SHEET 6 A10 GLU A 106 PHE A 113 -1 N PHE A 113 O VAL A 116 SHEET 7 A10 PHE A 96 LYS A 103 -1 N GLU A 99 O THR A 110 SHEET 8 A10 LYS A 88 LYS A 92 -1 N THR A 91 O HIS A 98 SHEET 9 A10 LYS A 76 LEU A 84 -1 N HIS A 83 O VAL A 90 SHEET 10 A10 LYS A 66 THR A 72 -1 N ALA A 68 O CYS A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1