HEADER SUGAR BINDING PROTEIN 26-SEP-02 1MVQ TITLE CRATYLIA MOLLIS LECTIN (ISOFORM 1) IN COMPLEX WITH METHYL-ALPHA-D- TITLE 2 MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN, ISOFORM 1; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRATYLIA MOLLIS; SOURCE 3 ORGANISM_TAXID: 252530; SOURCE 4 OTHER_DETAILS: SEED KEYWDS LEGUME LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.A.DE SOUZA,P.S.OLIVEIRA,S.TRAPANI,M.T.CORREIA,G.OLIVA,L.C.COELHO, AUTHOR 2 L.J.GREENE REVDAT 6 14-FEB-24 1MVQ 1 HETSYN REVDAT 5 29-JUL-20 1MVQ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-JUL-11 1MVQ 1 VERSN REVDAT 3 24-FEB-09 1MVQ 1 VERSN REVDAT 2 23-DEC-03 1MVQ 1 JRNL REVDAT 1 07-OCT-03 1MVQ 0 JRNL AUTH G.A.DE SOUZA,P.S.OLIVEIRA,S.TRAPANI,A.C.SANTOS,J.C.ROSA, JRNL AUTH 2 H.J.LAURE,M.T.CORREIA,G.A.TAVARES,G.OLIVA,L.C.COELHO, JRNL AUTH 3 L.J.GREENE JRNL TITL AMINO ACID SEQUENCE AND TERTIARY STRUCTURE OF CRATYLIA JRNL TITL 2 MOLLIS SEED LECTIN JRNL REF GLYCOBIOLOGY V. 13 961 2003 JRNL REFN ISSN 0959-6658 JRNL PMID 12966038 JRNL DOI 10.1093/GLYCOB/CWG115 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.09 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.890 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1904 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2610 ; 1.599 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 6.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;12.298 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1399 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 776 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 127 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.260 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.095 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 1.104 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1976 ; 2.022 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 706 ; 2.858 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 634 ; 4.633 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 236 REMARK 3 RESIDUE RANGE : A 237 A 237 REMARK 3 RESIDUE RANGE : A 238 A 239 REMARK 3 RESIDUE RANGE : A 240 A 418 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0430 24.9650 38.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: 0.1496 REMARK 3 T33: 0.0998 T12: 0.0030 REMARK 3 T13: 0.0020 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.2375 L22: 0.7974 REMARK 3 L33: 1.3201 L12: -0.3185 REMARK 3 L13: -0.2831 L23: 0.1075 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0001 S13: -0.0867 REMARK 3 S21: -0.0384 S22: 0.0379 S23: -0.0059 REMARK 3 S31: 0.1401 S32: 0.0714 S33: -0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1MVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.38 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25553 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 9.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.760 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.72 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 5CNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, SODIUM CHLORIDE, O1-METHYL REMARK 280 -ALPHA-D-MANNOSE, ACETATE BUFFER, PH 4.5, VAPOR DIFFUSION, REMARK 280 MICROGRAVITY, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.72450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.97800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.66150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.72450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.97800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.66150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.72450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.97800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.66150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.72450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.97800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER - A DIMER OF A DIMER - REMARK 300 GENERATED FROM THE MONOMER IN THE ASYMMETRIC UNIT. THE FIRST DIMER REMARK 300 IS GENERATED BY THE OPERATIONS: X, Y, Z AND -X, Y, -Z+1. THE SECOND REMARK 300 DIMER IS GENERATED BY THE OPERATIONS: X, -Y+1, -Z+1 AND -X, -Y+1, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 77.95600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 105.32300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 77.95600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 105.32300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 391 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 46 CE NZ REMARK 470 GLN A 135 CG CD OE1 NE2 REMARK 470 LYS A 138 NZ REMARK 470 ARG A 158 CD NE CZ NH1 NH2 REMARK 470 LYS A 183 CD CE NZ REMARK 470 LYS A 199 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 60 NH2 ARG A 60 2565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 234 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 36.39 -85.05 REMARK 500 SER A 117 -144.21 -134.48 REMARK 500 ASN A 118 58.24 -94.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 239 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 100.2 REMARK 620 3 ASP A 19 OD1 167.4 91.8 REMARK 620 4 HIS A 24 NE2 92.1 90.4 91.9 REMARK 620 5 HOH A 240 O 86.9 172.1 81.0 92.9 REMARK 620 6 HOH A 241 O 89.1 86.8 87.5 177.2 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 238 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 51.7 REMARK 620 3 TYR A 12 O 77.8 113.6 REMARK 620 4 ASN A 14 OD1 150.6 157.7 81.1 REMARK 620 5 ASP A 19 OD2 109.9 77.0 84.9 88.2 REMARK 620 6 HOH A 242 O 75.9 111.3 90.5 84.1 171.6 REMARK 620 7 HOH A 243 O 109.9 74.4 171.7 90.6 94.9 88.6 REMARK 620 N 1 2 3 4 5 6 DBREF 1MVQ A 1 236 UNP P83721 LEC1_CRAMO 1 234 SEQRES 1 A 236 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 236 ASN THR ASP ILE GLY ASP PRO SER TYR GLN HIS ILE GLY SEQRES 3 A 236 ILE ASN ILE LYS SER ILE ARG SER LYS ALA THR THR ARG SEQRES 4 A 236 TRP ASP VAL GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 236 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 236 SER TYR PRO GLY GLY SER SER ALA THR VAL SER TYR ASP SEQRES 7 A 236 VAL ASP LEU ASN ASN ILE LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 236 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 236 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 236 ASN SER THR ALA ASP ALA GLN SER LEU HIS PHE THR PHE SEQRES 11 A 236 ASN GLN PHE SER GLN SER PRO LYS ASP LEU ILE LEU GLN SEQRES 12 A 236 GLY ASP ALA SER THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 A 236 THR ARG VAL SER ASN GLY SER PRO GLN SER ASP SER VAL SEQRES 14 A 236 GLY ARG ALA LEU TYR TYR ALA PRO VAL HIS ILE TRP ASP SEQRES 15 A 236 LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE THR SEQRES 16 A 236 PHE LEU ILE LYS SER PRO ASP ARG GLU ILE ALA ASP GLY SEQRES 17 A 236 ILE ALA PHE PHE ILE ALA ASN THR ASP SER SER ILE PRO SEQRES 18 A 236 HIS GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO ASP SEQRES 19 A 236 ALA ASN HET MMA A 237 13 HET CA A 238 1 HET MN A 239 1 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE FORMUL 2 MMA C7 H14 O6 FORMUL 3 CA CA 2+ FORMUL 4 MN MN 2+ FORMUL 5 HOH *179(H2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 ASP A 80 ILE A 84 5 5 HELIX 3 3 GLY A 225 LEU A 229 5 5 SHEET 1 A 7 ALA A 36 ARG A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 27 O ALA A 36 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASN A 28 SHEET 4 A 7 GLY A 208 ASN A 215 -1 O ILE A 209 N LEU A 9 SHEET 5 A 7 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 210 SHEET 6 A 7 VAL A 169 TYR A 174 -1 O ALA A 172 N LEU A 93 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 173 SHEET 1 B 6 ALA A 36 ARG A 39 0 SHEET 2 B 6 HIS A 24 ILE A 29 -1 N ILE A 27 O ALA A 36 SHEET 3 B 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASN A 28 SHEET 4 B 6 GLY A 208 ASN A 215 -1 O ILE A 209 N LEU A 9 SHEET 5 B 6 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 210 SHEET 6 B 6 VAL A 178 HIS A 179 -1 O VAL A 178 N VAL A 89 SHEET 1 C 6 SER A 71 ASP A 78 0 SHEET 2 C 6 ARG A 60 TYR A 67 -1 N LEU A 61 O TYR A 77 SHEET 3 C 6 VAL A 47 ASN A 55 -1 N HIS A 51 O VAL A 64 SHEET 4 C 6 VAL A 187 LEU A 197 -1 O ALA A 192 N ILE A 52 SHEET 5 C 6 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 187 SHEET 6 C 6 GLN A 124 PHE A 130 -1 O GLN A 124 N LEU A 115 SHEET 1 D 7 SER A 71 ASP A 78 0 SHEET 2 D 7 ARG A 60 TYR A 67 -1 N LEU A 61 O TYR A 77 SHEET 3 D 7 VAL A 47 ASN A 55 -1 N HIS A 51 O VAL A 64 SHEET 4 D 7 VAL A 187 LEU A 197 -1 O ALA A 192 N ILE A 52 SHEET 5 D 7 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 187 SHEET 6 D 7 LEU A 154 GLN A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 D 7 SER A 147 THR A 148 -1 N SER A 147 O GLN A 155 SHEET 1 E 2 VAL A 159 SER A 160 0 SHEET 2 E 2 SER A 163 PRO A 164 -1 O SER A 163 N SER A 160 LINK OE2 GLU A 8 MN MN A 239 1555 1555 2.08 LINK OD1 ASP A 10 CA CA A 238 1555 1555 2.42 LINK OD2 ASP A 10 CA CA A 238 1555 1555 2.50 LINK OD2 ASP A 10 MN MN A 239 1555 1555 2.08 LINK O TYR A 12 CA CA A 238 1555 1555 2.29 LINK OD1 ASN A 14 CA CA A 238 1555 1555 2.39 LINK OD2 ASP A 19 CA CA A 238 1555 1555 2.40 LINK OD1 ASP A 19 MN MN A 239 1555 1555 2.09 LINK NE2 HIS A 24 MN MN A 239 1555 1555 2.10 LINK CA CA A 238 O HOH A 242 1555 1555 2.41 LINK CA CA A 238 O HOH A 243 1555 1555 2.49 LINK MN MN A 239 O HOH A 240 1555 1555 2.08 LINK MN MN A 239 O HOH A 241 1555 1555 2.18 CISPEP 1 ALA A 206 ASP A 207 0 -1.98 CRYST1 63.449 77.956 105.323 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015761 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009495 0.00000