HEADER GLYCOSIDASE 23-MAR-97 1MYR TITLE MYROSINASE FROM SINAPIS ALBA CAVEAT 1MYR NAG A 971 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYROSINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THIOGLUCOSIDE GLUCOHYDROLASE; COMPND 5 EC: 3.2.3.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINAPIS ALBA; SOURCE 3 ORGANISM_COMMON: WHITE MUSTARD; SOURCE 4 ORGANISM_TAXID: 3728; SOURCE 5 STRAIN: EMERGO; SOURCE 6 ORGAN: SEED; SOURCE 7 CELL: MYROSIN CELLS; SOURCE 8 CELLULAR_LOCATION: MYROSIN GRAINS KEYWDS FAMILY 1 GLYCOSYL HYDROLASE, GLUCOSINOLATE, MYROSINASE, TIM BARREL, KEYWDS 2 GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR W.P.BURMEISTER,R.IORI,S.PALMIERI,B.HENRISSAT REVDAT 8 23-OCT-24 1MYR 1 REMARK REVDAT 7 09-AUG-23 1MYR 1 HETSYN LINK REVDAT 6 29-JUL-20 1MYR 1 CAVEAT COMPND REMARK HET REVDAT 6 2 1 HETNAM FORMUL LINK SITE REVDAT 6 3 1 ATOM REVDAT 5 16-NOV-11 1MYR 1 HETATM REVDAT 4 13-JUL-11 1MYR 1 VERSN REVDAT 3 24-FEB-09 1MYR 1 VERSN REVDAT 2 01-APR-03 1MYR 1 JRNL REVDAT 1 16-JUN-97 1MYR 0 JRNL AUTH W.P.BURMEISTER,S.COTTAZ,H.DRIGUEZ,R.IORI,S.PALMIERI, JRNL AUTH 2 B.HENRISSAT JRNL TITL THE CRYSTAL STRUCTURES OF SINAPIS ALBA MYROSINASE AND A JRNL TITL 2 COVALENT GLYCOSYL-ENZYME INTERMEDIATE PROVIDE INSIGHTS INTO JRNL TITL 3 THE SUBSTRATE RECOGNITION AND ACTIVE-SITE MACHINERY OF AN JRNL TITL 4 S-GLYCOSIDASE. JRNL REF STRUCTURE V. 5 663 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9195886 JRNL DOI 10.1016/S0969-2126(97)00221-9 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 88638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4533 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7421 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 396 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4003 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 339 REMARK 3 SOLVENT ATOMS : 672 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 9.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 BOND ANGLES (DEGREES) : 1.750 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.960 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.230 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM3_MOD.CHO REMARK 3 PARAMETER FILE 3 : PARAM.H2O REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH3.CHO REMARK 3 TOPOLOGY FILE 3 : TOPH.H2O REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR, SAGITALLY FOCUSING REMARK 200 CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, ROTAVATA, AGROVATA REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 17.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : 0.19000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1CBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP METHOD, 12 MG/ML PROTEIN REMARK 280 IN 30 MM HEPES, PH 6.5, 0.05 % NAN3 PRECIPITANT 66 % SAT. REMARK 280 AMMONIUM SULFATE, 100MM TRIS-HCL, VAPOR DIFFUSION - HANGING DROP, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 134.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.45000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 992 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1287 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1463 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1520 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 72 -134.52 37.47 REMARK 500 HIS A 141 53.35 -105.76 REMARK 500 TRP A 142 -15.10 82.96 REMARK 500 TYR A 152 23.33 -146.24 REMARK 500 THR A 184 -72.08 -85.87 REMARK 500 GLN A 187 78.87 32.91 REMARK 500 ASN A 218 104.95 -162.15 REMARK 500 ASP A 377 95.40 -173.24 REMARK 500 TYR A 385 86.00 -158.74 REMARK 500 ASN A 410 123.06 -172.16 REMARK 500 ASN A 466 -21.95 82.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 10 0.07 SIDE CHAIN REMARK 500 TYR A 329 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 126 12.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 992 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 NE2 REMARK 620 2 HIS A 56 NE2 114.6 REMARK 620 3 ASP A 70 OD2 119.4 103.0 REMARK 620 4 ASP A 70 OD2 103.0 119.4 97.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZNB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE TOGETHER WITH THE SYMMETRY REMARK 800 -RELATED EQUIVALENTS. REMARK 800 REMARK 800 SITE_IDENTIFIER: ASN REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE NUCLEOPHILE AT THE POSITION OF THE REMARK 800 GENERAL ACID/BASE DBREF 1MYR A 1 501 UNP P29736 MYRA_SINAL 1 501 SEQRES 1 A 501 ASP GLU GLU ILE THR CYS GLN GLU ASN ASN PRO PHE THR SEQRES 2 A 501 CYS GLY ASN THR ASP GLY LEU ASN SER SER SER PHE GLU SEQRES 3 A 501 ALA ASP PHE ILE PHE GLY VAL ALA SER SER ALA TYR GLN SEQRES 4 A 501 ILE GLU GLY THR ILE GLY ARG GLY LEU ASN ILE TRP ASP SEQRES 5 A 501 GLY PHE THR HIS ARG TYR PRO ASP LYS SER GLY PRO ASP SEQRES 6 A 501 HIS GLY ASN GLY ASP THR THR CYS ASP SER PHE SER TYR SEQRES 7 A 501 TRP GLN LYS ASP ILE ASP VAL LEU ASP GLU LEU ASN ALA SEQRES 8 A 501 THR GLY TYR ARG PHE SER ILE ALA TRP SER ARG ILE ILE SEQRES 9 A 501 PRO ARG GLY LYS ARG SER ARG GLY VAL ASN GLN LYS GLY SEQRES 10 A 501 ILE ASP TYR TYR HIS GLY LEU ILE ASP GLY LEU ILE LYS SEQRES 11 A 501 LYS GLY ILE THR PRO PHE VAL THR LEU PHE HIS TRP ASP SEQRES 12 A 501 LEU PRO GLN THR LEU GLN ASP GLU TYR GLU GLY PHE LEU SEQRES 13 A 501 ASP PRO GLN ILE ILE ASP ASP PHE LYS ASP TYR ALA ASP SEQRES 14 A 501 LEU CYS PHE GLU GLU PHE GLY ASP SER VAL LYS TYR TRP SEQRES 15 A 501 LEU THR ILE ASN GLN LEU TYR SER VAL PRO THR ARG GLY SEQRES 16 A 501 TYR GLY SER ALA LEU ASP ALA PRO GLY ARG CYS SER PRO SEQRES 17 A 501 THR VAL ASP PRO SER CYS TYR ALA GLY ASN SER SER THR SEQRES 18 A 501 GLU PRO TYR ILE VAL ALA HIS HIS GLN LEU LEU ALA HIS SEQRES 19 A 501 ALA LYS VAL VAL ASP LEU TYR ARG LYS ASN TYR THR HIS SEQRES 20 A 501 GLN GLY GLY LYS ILE GLY PRO THR MET ILE THR ARG TRP SEQRES 21 A 501 PHE LEU PRO TYR ASN ASP THR ASP ARG HIS SER ILE ALA SEQRES 22 A 501 ALA THR GLU ARG MET LYS GLN PHE PHE LEU GLY TRP PHE SEQRES 23 A 501 MET GLY PRO LEU THR ASN GLY THR TYR PRO GLN ILE MET SEQRES 24 A 501 ILE ASP THR VAL GLY ALA ARG LEU PRO THR PHE SER PRO SEQRES 25 A 501 GLU GLU THR ASN LEU VAL LYS GLY SER TYR ASP PHE LEU SEQRES 26 A 501 GLY LEU ASN TYR TYR PHE THR GLN TYR ALA GLN PRO SER SEQRES 27 A 501 PRO ASN PRO VAL ASN ALA THR ASN HIS THR ALA MET MET SEQRES 28 A 501 ASP ALA GLY ALA LYS LEU THR TYR ILE ASN ALA SER GLY SEQRES 29 A 501 HIS TYR ILE GLY PRO LEU PHE GLU SER ASP GLY GLY ASP SEQRES 30 A 501 GLY SER SER ASN ILE TYR TYR TYR PRO LYS GLY ILE TYR SEQRES 31 A 501 SER VAL MET ASP TYR PHE LYS ASN LYS TYR TYR ASN PRO SEQRES 32 A 501 LEU ILE TYR VAL THR GLU ASN GLY ILE SER THR PRO GLY SEQRES 33 A 501 SER GLU ASN ARG LYS GLU SER MET LEU ASP TYR THR ARG SEQRES 34 A 501 ILE ASP TYR LEU CYS SER HIS LEU CYS PHE LEU ASN LYS SEQRES 35 A 501 VAL ILE LYS GLU LYS ASP VAL ASN VAL LYS GLY TYR LEU SEQRES 36 A 501 ALA TRP ALA LEU GLY ASP ASN TYR GLU PHE ASN ASN GLY SEQRES 37 A 501 PHE THR VAL ARG PHE GLY LEU SER TYR ILE ASN TRP ASN SEQRES 38 A 501 ASN VAL THR ASP ARG ASP LEU LYS LYS SER GLY GLN TRP SEQRES 39 A 501 TYR GLN LYS PHE ILE SER PRO MODRES 1MYR ASN A 21 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 90 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 218 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 244 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 265 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 292 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 346 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 361 ASN GLYCOSYLATION SITE MODRES 1MYR ASN A 482 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET XYP C 4 9 HET FUC C 5 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET XYP D 4 9 HET MAN D 5 11 HET MAN D 6 11 HET FUC D 7 10 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 901 14 HET NAG A 911 14 HET NAG A 931 14 HET NAG A 971 14 HET NAG A 991 14 HET ZN A 992 1 HET SO4 A 993 5 HET SO4 A 994 5 HET SO4 A 995 5 HET SO4 A 996 5 HET SO4 A 997 5 HET SO4 A 998 5 HET SO4 A 999 5 HET SO4 A1000 5 HET SO4 A1001 5 HET SO4 A1002 5 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1005 6 HET GOL A1006 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 13(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 XYP 2(C5 H10 O5) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 11 ZN ZN 2+ FORMUL 12 SO4 10(O4 S 2-) FORMUL 22 GOL 4(C3 H8 O3) FORMUL 26 HOH *672(H2 O) HELIX 1 1 SER A 22 SER A 24 5 3 HELIX 2 2 ALA A 37 ILE A 40 1 4 HELIX 3 3 ILE A 50 ARG A 57 1 8 HELIX 4 4 PRO A 59 SER A 62 1 4 HELIX 5 5 SER A 75 LEU A 89 1 15 HELIX 6 6 TRP A 100 ILE A 103 1 4 HELIX 7 7 ARG A 109 ARG A 111 5 3 HELIX 8 8 GLN A 115 LYS A 131 1 17 HELIX 9 9 GLN A 146 TYR A 152 1 7 HELIX 10 10 GLY A 154 LEU A 156 5 3 HELIX 11 11 PRO A 158 PHE A 175 5 18 HELIX 12 12 LEU A 188 TYR A 196 1 9 HELIX 13 13 GLU A 222 ASN A 244 1 23 HELIX 14 14 THR A 246 GLN A 248 5 3 HELIX 15 15 ARG A 269 PHE A 282 1 14 HELIX 16 16 GLY A 284 ASN A 292 1 9 HELIX 17 17 GLN A 297 ARG A 306 1 10 HELIX 18 18 PRO A 312 VAL A 318 1 7 HELIX 19 19 ALA A 349 ALA A 353 5 5 HELIX 20 20 GLY A 378 SER A 380 5 3 HELIX 21 21 PRO A 386 LYS A 399 5 14 HELIX 22 22 ARG A 420 MET A 424 1 5 HELIX 23 23 TYR A 427 LYS A 447 1 21 HELIX 24 24 LYS A 490 ILE A 499 1 10 SHEET 1 A 7 THR A 134 THR A 138 0 SHEET 2 A 7 GLY A 93 SER A 97 1 N TYR A 94 O THR A 134 SHEET 3 A 7 ILE A 30 ALA A 34 1 N VAL A 33 O GLY A 93 SHEET 4 A 7 ASN A 450 ALA A 456 1 N TYR A 454 O ILE A 30 SHEET 5 A 7 LEU A 404 GLU A 409 1 N ILE A 405 O ASN A 450 SHEET 6 A 7 LEU A 325 TYR A 329 1 N LEU A 325 O TYR A 406 SHEET 7 A 7 THR A 255 THR A 258 1 N MET A 256 O GLY A 326 SHEET 1 B 2 TYR A 181 LEU A 183 0 SHEET 2 B 2 LYS A 251 GLY A 253 1 N LYS A 251 O TRP A 182 SHEET 1 C 3 TRP A 260 PRO A 263 0 SHEET 2 C 3 THR A 332 PRO A 337 1 N GLN A 333 O TRP A 260 SHEET 3 C 3 ALA A 355 THR A 358 -1 N THR A 358 O TYR A 334 SHEET 1 D 2 SER A 476 ASN A 479 0 SHEET 2 D 2 ASN A 482 LEU A 488 -1 N ASP A 487 O TYR A 477 SSBOND 1 CYS A 6 CYS A 438 1555 1555 2.05 SSBOND 2 CYS A 14 CYS A 434 1555 1555 2.07 SSBOND 3 CYS A 206 CYS A 214 1555 1555 2.06 LINK ND2 ASN A 21 C1 NAG A 901 1555 1555 1.46 LINK ND2 ASN A 90 C1 NAG A 911 1555 1555 1.46 LINK ND2 ASN A 218 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 244 C1 NAG A 931 1555 1555 1.47 LINK ND2 ASN A 265 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 292 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 346 C1 NAG A 971 1555 1555 1.49 LINK ND2 ASN A 361 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 482 C1 NAG A 991 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK O3 NAG C 1 C1 FUC C 5 1555 1555 1.41 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.40 LINK O2 BMA C 3 C1 XYP C 4 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.37 LINK O3 NAG D 1 C1 FUC D 7 1555 1555 1.42 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.36 LINK O2 BMA D 3 C1 XYP D 4 1555 1555 1.38 LINK O3 BMA D 3 C1 MAN D 5 1555 1555 1.41 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.42 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK NE2 HIS A 56 ZN ZN A 992 1555 1555 1.99 LINK NE2 HIS A 56 ZN ZN A 992 3656 1555 1.99 LINK OD2 ASP A 70 ZN ZN A 992 1555 1555 1.94 LINK OD2 ASP A 70 ZN ZN A 992 3656 1555 1.94 CISPEP 1 ASN A 10 PRO A 11 0 -2.56 CISPEP 2 ALA A 202 PRO A 203 0 9.36 CISPEP 3 TRP A 457 ALA A 458 0 0.09 SITE 1 ZNB 2 HIS A 56 ASP A 70 SITE 1 ASN 2 GLU A 409 GLN A 187 CRYST1 134.300 136.400 80.300 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012453 0.00000