data_1MZP # _entry.id 1MZP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MZP pdb_00001mzp 10.2210/pdb1mzp/pdb NDB PR0085 ? ? RCSB RCSB017337 ? ? WWPDB D_1000017337 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-21 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_entry_details 6 4 'Structure model' pdbx_modification_feature 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_ref_seq_dif 10 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.value' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 4 'Structure model' '_struct_ref_seq_dif.details' 22 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MZP _pdbx_database_status.recvd_initial_deposition_date 2002-10-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1AD2 'ribosomal protein L1 from Thermus thermophilus' unspecified PDB 1CSJ 'ribosomal protein L1 from Methanococcus jannaschii' unspecified PDB 1DWU 'ribosomal protein L1 from Methanococcus thermolithotrophicus' unspecified PDB 1JJ2 'Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution' unspecified PDB 1GIY 'Crystal Structure Of The Ribosome At 5.5 A Resolution' unspecified PDB 1LNR ;Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Ribosome ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nikulin, A.' 1 'Eliseikina, I.' 2 'Tishchenko, S.' 3 'Nevskaya, N.' 4 'Davydova, N.' 5 'Platonova, O.' 6 'Piendl, W.' 7 'Selmer, M.' 8 'Liljas, A.' 9 'Zimmermann, R.' 10 'Garber, M.' 11 'Nikonov, S.' 12 # _citation.id primary _citation.title 'Structure of the L1 protuberance in the ribosome.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 10 _citation.page_first 104 _citation.page_last 108 _citation.year 2003 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12514741 _citation.pdbx_database_id_DOI 10.1038/nsb886 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nikulin, A.' 1 ? primary 'Eliseikina, I.' 2 ? primary 'Tishchenko, S.' 3 ? primary 'Nevskaya, N.' 4 ? primary 'Davydova, N.' 5 ? primary 'Platonova, O.' 6 ? primary 'Piendl, W.' 7 ? primary 'Selmer, M.' 8 ? primary 'Liljas, A.' 9 ? primary 'Drygin, D.' 10 ? primary 'Zimmermann, R.' 11 ? primary 'Garber, M.' 12 ? primary 'Nikonov, S.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'fragment of 23S rRNA' 17836.684 1 ? ? ? ? 2 polymer man '50s ribosomal protein L1P' 24690.396 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 94 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGAUGCGUAGGAUAGGUGGGAGCCGCAAGGCGCCGGUGAAAUACCACCCUUCCC GGGAUGCGUAGGAUAGGUGGGAGCCGCAAGGCGCCGGUGAAAUACCACCCUUCCC B ? 2 'polypeptide(L)' no yes ;MLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGID(MSE)KKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYA KKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQES(MSE)ALAGRILGPALGPRGKFPTPLPNTADISEYINRFK RSVLVKTKDQPQVQVFIGTED(MSE)KPEDLAENAIAVLNAIENKAKVETNLRNIYVKTT(MSE)GKAVKVKR ; ;MLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKAS PKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTK DQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETNLRNIYVKTTMGKAVKVKR ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 U n 1 6 G n 1 7 C n 1 8 G n 1 9 U n 1 10 A n 1 11 G n 1 12 G n 1 13 A n 1 14 U n 1 15 A n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 G n 1 21 G n 1 22 A n 1 23 G n 1 24 C n 1 25 C n 1 26 G n 1 27 C n 1 28 A n 1 29 A n 1 30 G n 1 31 G n 1 32 C n 1 33 G n 1 34 C n 1 35 C n 1 36 G n 1 37 G n 1 38 U n 1 39 G n 1 40 A n 1 41 A n 1 42 A n 1 43 U n 1 44 A n 1 45 C n 1 46 C n 1 47 A n 1 48 C n 1 49 C n 1 50 C n 1 51 U n 1 52 U n 1 53 C n 1 54 C n 1 55 C n 2 1 MET n 2 2 LEU n 2 3 ALA n 2 4 ASP n 2 5 LYS n 2 6 GLU n 2 7 SER n 2 8 LEU n 2 9 ILE n 2 10 GLU n 2 11 ALA n 2 12 LEU n 2 13 LYS n 2 14 LEU n 2 15 ALA n 2 16 LEU n 2 17 SER n 2 18 THR n 2 19 GLU n 2 20 TYR n 2 21 ASN n 2 22 VAL n 2 23 LYS n 2 24 ARG n 2 25 ASN n 2 26 PHE n 2 27 THR n 2 28 GLN n 2 29 SER n 2 30 VAL n 2 31 GLU n 2 32 ILE n 2 33 ILE n 2 34 LEU n 2 35 THR n 2 36 PHE n 2 37 LYS n 2 38 GLY n 2 39 ILE n 2 40 ASP n 2 41 MSE n 2 42 LYS n 2 43 LYS n 2 44 GLY n 2 45 ASP n 2 46 LEU n 2 47 LYS n 2 48 LEU n 2 49 ARG n 2 50 GLU n 2 51 ILE n 2 52 VAL n 2 53 PRO n 2 54 LEU n 2 55 PRO n 2 56 LYS n 2 57 GLN n 2 58 PRO n 2 59 SER n 2 60 LYS n 2 61 ALA n 2 62 LYS n 2 63 ARG n 2 64 VAL n 2 65 LEU n 2 66 VAL n 2 67 VAL n 2 68 PRO n 2 69 SER n 2 70 SER n 2 71 GLU n 2 72 GLN n 2 73 LEU n 2 74 GLU n 2 75 TYR n 2 76 ALA n 2 77 LYS n 2 78 LYS n 2 79 ALA n 2 80 SER n 2 81 PRO n 2 82 LYS n 2 83 VAL n 2 84 VAL n 2 85 ILE n 2 86 THR n 2 87 ARG n 2 88 GLU n 2 89 GLU n 2 90 LEU n 2 91 GLN n 2 92 LYS n 2 93 LEU n 2 94 GLN n 2 95 GLY n 2 96 GLN n 2 97 LYS n 2 98 ARG n 2 99 PRO n 2 100 VAL n 2 101 LYS n 2 102 LYS n 2 103 LEU n 2 104 ALA n 2 105 ARG n 2 106 GLN n 2 107 ASN n 2 108 GLU n 2 109 TRP n 2 110 PHE n 2 111 LEU n 2 112 ILE n 2 113 ASN n 2 114 GLN n 2 115 GLU n 2 116 SER n 2 117 MSE n 2 118 ALA n 2 119 LEU n 2 120 ALA n 2 121 GLY n 2 122 ARG n 2 123 ILE n 2 124 LEU n 2 125 GLY n 2 126 PRO n 2 127 ALA n 2 128 LEU n 2 129 GLY n 2 130 PRO n 2 131 ARG n 2 132 GLY n 2 133 LYS n 2 134 PHE n 2 135 PRO n 2 136 THR n 2 137 PRO n 2 138 LEU n 2 139 PRO n 2 140 ASN n 2 141 THR n 2 142 ALA n 2 143 ASP n 2 144 ILE n 2 145 SER n 2 146 GLU n 2 147 TYR n 2 148 ILE n 2 149 ASN n 2 150 ARG n 2 151 PHE n 2 152 LYS n 2 153 ARG n 2 154 SER n 2 155 VAL n 2 156 LEU n 2 157 VAL n 2 158 LYS n 2 159 THR n 2 160 LYS n 2 161 ASP n 2 162 GLN n 2 163 PRO n 2 164 GLN n 2 165 VAL n 2 166 GLN n 2 167 VAL n 2 168 PHE n 2 169 ILE n 2 170 GLY n 2 171 THR n 2 172 GLU n 2 173 ASP n 2 174 MSE n 2 175 LYS n 2 176 PRO n 2 177 GLU n 2 178 ASP n 2 179 LEU n 2 180 ALA n 2 181 GLU n 2 182 ASN n 2 183 ALA n 2 184 ILE n 2 185 ALA n 2 186 VAL n 2 187 LEU n 2 188 ASN n 2 189 ALA n 2 190 ILE n 2 191 GLU n 2 192 ASN n 2 193 LYS n 2 194 ALA n 2 195 LYS n 2 196 VAL n 2 197 GLU n 2 198 THR n 2 199 ASN n 2 200 LEU n 2 201 ARG n 2 202 ASN n 2 203 ILE n 2 204 TYR n 2 205 VAL n 2 206 LYS n 2 207 THR n 2 208 THR n 2 209 MSE n 2 210 GLY n 2 211 LYS n 2 212 ALA n 2 213 VAL n 2 214 LYS n 2 215 VAL n 2 216 LYS n 2 217 ARG n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2285 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSacL1.4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ;AUTHOR STATES TO AVOID THE POTENTIAL MISINCORPORATION OF LYSINE INSTEAD OF ARGININE, THE HOST STRAIN WAS COTRANSFORMED WITH PUBS520, A PLASMID CARRYING THE GENE FOR TRNA(ARG)AGA-AGG. ; # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesis of the RNA fragment from the plasmid pDD55; sequence from cell-free(in vitro) system without living organism.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 G 2 2 2 G G B . n A 1 3 G 3 3 3 G G B . n A 1 4 A 4 4 4 A A B . n A 1 5 U 5 5 5 U U B . n A 1 6 G 6 6 6 G G B . n A 1 7 C 7 7 7 C C B . n A 1 8 G 8 8 8 G G B . n A 1 9 U 9 9 9 U U B . n A 1 10 A 10 10 10 A A B . n A 1 11 G 11 11 11 G G B . n A 1 12 G 12 12 12 G G B . n A 1 13 A 13 13 13 A A B . n A 1 14 U 14 14 14 U U B . n A 1 15 A 15 15 15 A A B . n A 1 16 G 16 16 16 G G B . n A 1 17 G 17 17 17 G G B . n A 1 18 U 18 18 18 U U B . n A 1 19 G 19 19 19 G G B . n A 1 20 G 20 20 20 G G B . n A 1 21 G 21 21 21 G G B . n A 1 22 A 22 22 22 A A B . n A 1 23 G 23 23 23 G G B . n A 1 24 C 24 24 24 C C B . n A 1 25 C 25 25 25 C C B . n A 1 26 G 26 26 26 G G B . n A 1 27 C 27 27 27 C C B . n A 1 28 A 28 28 28 A A B . n A 1 29 A 29 29 29 A A B . n A 1 30 G 30 30 30 G G B . n A 1 31 G 31 31 31 G G B . n A 1 32 C 32 32 32 C C B . n A 1 33 G 33 33 33 G G B . n A 1 34 C 34 34 34 C C B . n A 1 35 C 35 35 35 C C B . n A 1 36 G 36 36 36 G G B . n A 1 37 G 37 37 37 G G B . n A 1 38 U 38 38 38 U U B . n A 1 39 G 39 39 39 G G B . n A 1 40 A 40 40 40 A A B . n A 1 41 A 41 41 41 A A B . n A 1 42 A 42 42 42 A A B . n A 1 43 U 43 43 43 U U B . n A 1 44 A 44 44 44 A A B . n A 1 45 C 45 45 45 C C B . n A 1 46 C 46 46 46 C C B . n A 1 47 A 47 47 47 A A B . n A 1 48 C 48 48 48 C C B . n A 1 49 C 49 49 49 C C B . n A 1 50 C 50 50 50 C C B . n A 1 51 U 51 51 51 U U B . n A 1 52 U 52 52 52 U U B . n A 1 53 C 53 53 53 C C B . n A 1 54 C 54 54 54 C C B . n A 1 55 C 55 55 55 C C B . n B 2 1 MET 1 1 1 MET MET A . n B 2 2 LEU 2 2 2 LEU LEU A . n B 2 3 ALA 3 3 3 ALA ALA A . n B 2 4 ASP 4 4 4 ASP ASP A . n B 2 5 LYS 5 5 5 LYS LYS A . n B 2 6 GLU 6 6 6 GLU GLU A . n B 2 7 SER 7 7 7 SER SER A . n B 2 8 LEU 8 8 8 LEU LEU A . n B 2 9 ILE 9 9 9 ILE ILE A . n B 2 10 GLU 10 10 10 GLU GLU A . n B 2 11 ALA 11 11 11 ALA ALA A . n B 2 12 LEU 12 12 12 LEU LEU A . n B 2 13 LYS 13 13 13 LYS LYS A . n B 2 14 LEU 14 14 14 LEU LEU A . n B 2 15 ALA 15 15 15 ALA ALA A . n B 2 16 LEU 16 16 16 LEU LEU A . n B 2 17 SER 17 17 17 SER SER A . n B 2 18 THR 18 18 18 THR THR A . n B 2 19 GLU 19 19 19 GLU GLU A . n B 2 20 TYR 20 20 20 TYR TYR A . n B 2 21 ASN 21 21 21 ASN ASN A . n B 2 22 VAL 22 22 22 VAL VAL A . n B 2 23 LYS 23 23 23 LYS LYS A . n B 2 24 ARG 24 24 24 ARG ARG A . n B 2 25 ASN 25 25 25 ASN ASN A . n B 2 26 PHE 26 26 26 PHE PHE A . n B 2 27 THR 27 27 27 THR THR A . n B 2 28 GLN 28 28 28 GLN GLN A . n B 2 29 SER 29 29 29 SER SER A . n B 2 30 VAL 30 30 30 VAL VAL A . n B 2 31 GLU 31 31 31 GLU GLU A . n B 2 32 ILE 32 32 32 ILE ILE A . n B 2 33 ILE 33 33 33 ILE ILE A . n B 2 34 LEU 34 34 34 LEU LEU A . n B 2 35 THR 35 35 35 THR THR A . n B 2 36 PHE 36 36 36 PHE PHE A . n B 2 37 LYS 37 37 37 LYS LYS A . n B 2 38 GLY 38 38 38 GLY GLY A . n B 2 39 ILE 39 39 39 ILE ILE A . n B 2 40 ASP 40 40 40 ASP ASP A . n B 2 41 MSE 41 41 41 MSE MSE A . n B 2 42 LYS 42 42 42 LYS LYS A . n B 2 43 LYS 43 43 43 LYS LYS A . n B 2 44 GLY 44 44 44 GLY GLY A . n B 2 45 ASP 45 45 45 ASP ASP A . n B 2 46 LEU 46 46 46 LEU LEU A . n B 2 47 LYS 47 47 47 LYS LYS A . n B 2 48 LEU 48 48 48 LEU LEU A . n B 2 49 ARG 49 49 49 ARG ARG A . n B 2 50 GLU 50 50 50 GLU GLU A . n B 2 51 ILE 51 51 51 ILE ILE A . n B 2 52 VAL 52 52 52 VAL VAL A . n B 2 53 PRO 53 53 53 PRO PRO A . n B 2 54 LEU 54 54 54 LEU LEU A . n B 2 55 PRO 55 55 55 PRO PRO A . n B 2 56 LYS 56 56 56 LYS LYS A . n B 2 57 GLN 57 57 57 GLN GLN A . n B 2 58 PRO 58 58 58 PRO PRO A . n B 2 59 SER 59 59 59 SER SER A . n B 2 60 LYS 60 60 60 LYS LYS A . n B 2 61 ALA 61 61 61 ALA ALA A . n B 2 62 LYS 62 62 62 LYS LYS A . n B 2 63 ARG 63 63 63 ARG ARG A . n B 2 64 VAL 64 64 64 VAL VAL A . n B 2 65 LEU 65 65 65 LEU LEU A . n B 2 66 VAL 66 66 66 VAL VAL A . n B 2 67 VAL 67 67 67 VAL VAL A . n B 2 68 PRO 68 68 68 PRO PRO A . n B 2 69 SER 69 69 69 SER SER A . n B 2 70 SER 70 70 70 SER SER A . n B 2 71 GLU 71 71 71 GLU GLU A . n B 2 72 GLN 72 72 72 GLN GLN A . n B 2 73 LEU 73 73 73 LEU LEU A . n B 2 74 GLU 74 74 74 GLU GLU A . n B 2 75 TYR 75 75 75 TYR TYR A . n B 2 76 ALA 76 76 76 ALA ALA A . n B 2 77 LYS 77 77 77 LYS LYS A . n B 2 78 LYS 78 78 78 LYS LYS A . n B 2 79 ALA 79 79 79 ALA ALA A . n B 2 80 SER 80 80 80 SER SER A . n B 2 81 PRO 81 81 81 PRO PRO A . n B 2 82 LYS 82 82 82 LYS LYS A . n B 2 83 VAL 83 83 83 VAL VAL A . n B 2 84 VAL 84 84 84 VAL VAL A . n B 2 85 ILE 85 85 85 ILE ILE A . n B 2 86 THR 86 86 86 THR THR A . n B 2 87 ARG 87 87 87 ARG ARG A . n B 2 88 GLU 88 88 88 GLU GLU A . n B 2 89 GLU 89 89 89 GLU GLU A . n B 2 90 LEU 90 90 90 LEU LEU A . n B 2 91 GLN 91 91 91 GLN GLN A . n B 2 92 LYS 92 92 92 LYS LYS A . n B 2 93 LEU 93 93 93 LEU LEU A . n B 2 94 GLN 94 94 94 GLN GLN A . n B 2 95 GLY 95 95 95 GLY GLY A . n B 2 96 GLN 96 96 96 GLN GLN A . n B 2 97 LYS 97 97 97 LYS LYS A . n B 2 98 ARG 98 98 98 ARG ARG A . n B 2 99 PRO 99 99 99 PRO PRO A . n B 2 100 VAL 100 100 100 VAL VAL A . n B 2 101 LYS 101 101 101 LYS LYS A . n B 2 102 LYS 102 102 102 LYS LYS A . n B 2 103 LEU 103 103 103 LEU LEU A . n B 2 104 ALA 104 104 104 ALA ALA A . n B 2 105 ARG 105 105 105 ARG ARG A . n B 2 106 GLN 106 106 106 GLN GLN A . n B 2 107 ASN 107 107 107 ASN ASN A . n B 2 108 GLU 108 108 108 GLU GLU A . n B 2 109 TRP 109 109 109 TRP TRP A . n B 2 110 PHE 110 110 110 PHE PHE A . n B 2 111 LEU 111 111 111 LEU LEU A . n B 2 112 ILE 112 112 112 ILE ILE A . n B 2 113 ASN 113 113 113 ASN ASN A . n B 2 114 GLN 114 114 114 GLN GLN A . n B 2 115 GLU 115 115 115 GLU GLU A . n B 2 116 SER 116 116 116 SER SER A . n B 2 117 MSE 117 117 117 MSE MSE A . n B 2 118 ALA 118 118 118 ALA ALA A . n B 2 119 LEU 119 119 119 LEU LEU A . n B 2 120 ALA 120 120 120 ALA ALA A . n B 2 121 GLY 121 121 121 GLY GLY A . n B 2 122 ARG 122 122 122 ARG ARG A . n B 2 123 ILE 123 123 123 ILE ILE A . n B 2 124 LEU 124 124 124 LEU LEU A . n B 2 125 GLY 125 125 125 GLY GLY A . n B 2 126 PRO 126 126 126 PRO PRO A . n B 2 127 ALA 127 127 127 ALA ALA A . n B 2 128 LEU 128 128 128 LEU LEU A . n B 2 129 GLY 129 129 129 GLY GLY A . n B 2 130 PRO 130 130 130 PRO PRO A . n B 2 131 ARG 131 131 131 ARG ARG A . n B 2 132 GLY 132 132 132 GLY GLY A . n B 2 133 LYS 133 133 133 LYS LYS A . n B 2 134 PHE 134 134 134 PHE PHE A . n B 2 135 PRO 135 135 135 PRO PRO A . n B 2 136 THR 136 136 136 THR THR A . n B 2 137 PRO 137 137 137 PRO PRO A . n B 2 138 LEU 138 138 138 LEU LEU A . n B 2 139 PRO 139 139 139 PRO PRO A . n B 2 140 ASN 140 140 140 ASN ASN A . n B 2 141 THR 141 141 141 THR THR A . n B 2 142 ALA 142 142 142 ALA ALA A . n B 2 143 ASP 143 143 143 ASP ASP A . n B 2 144 ILE 144 144 144 ILE ILE A . n B 2 145 SER 145 145 145 SER SER A . n B 2 146 GLU 146 146 146 GLU GLU A . n B 2 147 TYR 147 147 147 TYR TYR A . n B 2 148 ILE 148 148 148 ILE ILE A . n B 2 149 ASN 149 149 149 ASN ASN A . n B 2 150 ARG 150 150 150 ARG ARG A . n B 2 151 PHE 151 151 151 PHE PHE A . n B 2 152 LYS 152 152 152 LYS LYS A . n B 2 153 ARG 153 153 153 ARG ARG A . n B 2 154 SER 154 154 154 SER SER A . n B 2 155 VAL 155 155 155 VAL VAL A . n B 2 156 LEU 156 156 156 LEU LEU A . n B 2 157 VAL 157 157 157 VAL VAL A . n B 2 158 LYS 158 158 158 LYS LYS A . n B 2 159 THR 159 159 159 THR THR A . n B 2 160 LYS 160 160 160 LYS LYS A . n B 2 161 ASP 161 161 161 ASP ASP A . n B 2 162 GLN 162 162 162 GLN GLN A . n B 2 163 PRO 163 163 163 PRO PRO A . n B 2 164 GLN 164 164 164 GLN GLN A . n B 2 165 VAL 165 165 165 VAL VAL A . n B 2 166 GLN 166 166 166 GLN GLN A . n B 2 167 VAL 167 167 167 VAL VAL A . n B 2 168 PHE 168 168 168 PHE PHE A . n B 2 169 ILE 169 169 169 ILE ILE A . n B 2 170 GLY 170 170 170 GLY GLY A . n B 2 171 THR 171 171 171 THR THR A . n B 2 172 GLU 172 172 172 GLU GLU A . n B 2 173 ASP 173 173 173 ASP ASP A . n B 2 174 MSE 174 174 174 MSE MSE A . n B 2 175 LYS 175 175 175 LYS LYS A . n B 2 176 PRO 176 176 176 PRO PRO A . n B 2 177 GLU 177 177 177 GLU GLU A . n B 2 178 ASP 178 178 178 ASP ASP A . n B 2 179 LEU 179 179 179 LEU LEU A . n B 2 180 ALA 180 180 180 ALA ALA A . n B 2 181 GLU 181 181 181 GLU GLU A . n B 2 182 ASN 182 182 182 ASN ASN A . n B 2 183 ALA 183 183 183 ALA ALA A . n B 2 184 ILE 184 184 184 ILE ILE A . n B 2 185 ALA 185 185 185 ALA ALA A . n B 2 186 VAL 186 186 186 VAL VAL A . n B 2 187 LEU 187 187 187 LEU LEU A . n B 2 188 ASN 188 188 188 ASN ASN A . n B 2 189 ALA 189 189 189 ALA ALA A . n B 2 190 ILE 190 190 190 ILE ILE A . n B 2 191 GLU 191 191 191 GLU GLU A . n B 2 192 ASN 192 192 192 ASN ASN A . n B 2 193 LYS 193 193 193 LYS LYS A . n B 2 194 ALA 194 194 194 ALA ALA A . n B 2 195 LYS 195 195 195 LYS LYS A . n B 2 196 VAL 196 196 196 VAL VAL A . n B 2 197 GLU 197 197 197 GLU GLU A . n B 2 198 THR 198 198 198 THR THR A . n B 2 199 ASN 199 199 199 ASN ASN A . n B 2 200 LEU 200 200 200 LEU LEU A . n B 2 201 ARG 201 201 201 ARG ARG A . n B 2 202 ASN 202 202 202 ASN ASN A . n B 2 203 ILE 203 203 203 ILE ILE A . n B 2 204 TYR 204 204 204 TYR TYR A . n B 2 205 VAL 205 205 205 VAL VAL A . n B 2 206 LYS 206 206 206 LYS LYS A . n B 2 207 THR 207 207 207 THR THR A . n B 2 208 THR 208 208 208 THR THR A . n B 2 209 MSE 209 209 209 MSE MSE A . n B 2 210 GLY 210 210 210 GLY GLY A . n B 2 211 LYS 211 211 211 LYS LYS A . n B 2 212 ALA 212 212 212 ALA ALA A . n B 2 213 VAL 213 213 213 VAL VAL A . n B 2 214 LYS 214 214 214 LYS LYS A . n B 2 215 VAL 215 215 215 VAL VAL A . n B 2 216 LYS 216 216 216 LYS LYS A . n B 2 217 ARG 217 217 217 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 56 1 MG MG B . D 3 MG 1 57 2 MG MG B . E 3 MG 1 58 3 MG MG B . F 4 HOH 1 59 4 HOH HOH B . F 4 HOH 2 60 5 HOH HOH B . F 4 HOH 3 61 6 HOH HOH B . F 4 HOH 4 62 7 HOH HOH B . F 4 HOH 5 63 8 HOH HOH B . F 4 HOH 6 64 9 HOH HOH B . F 4 HOH 7 65 10 HOH HOH B . F 4 HOH 8 66 11 HOH HOH B . F 4 HOH 9 67 12 HOH HOH B . F 4 HOH 10 68 17 HOH HOH B . F 4 HOH 11 69 18 HOH HOH B . F 4 HOH 12 70 19 HOH HOH B . F 4 HOH 13 71 20 HOH HOH B . F 4 HOH 14 72 21 HOH HOH B . F 4 HOH 15 73 24 HOH HOH B . F 4 HOH 16 74 27 HOH HOH B . F 4 HOH 17 75 29 HOH HOH B . F 4 HOH 18 76 30 HOH HOH B . F 4 HOH 19 77 31 HOH HOH B . F 4 HOH 20 78 32 HOH HOH B . F 4 HOH 21 79 33 HOH HOH B . F 4 HOH 22 80 34 HOH HOH B . F 4 HOH 23 81 35 HOH HOH B . F 4 HOH 24 82 38 HOH HOH B . F 4 HOH 25 83 42 HOH HOH B . F 4 HOH 26 84 43 HOH HOH B . F 4 HOH 27 85 44 HOH HOH B . F 4 HOH 28 86 47 HOH HOH B . F 4 HOH 29 87 49 HOH HOH B . F 4 HOH 30 88 53 HOH HOH B . F 4 HOH 31 89 58 HOH HOH B . F 4 HOH 32 90 61 HOH HOH B . F 4 HOH 33 91 62 HOH HOH B . F 4 HOH 34 92 64 HOH HOH B . F 4 HOH 35 93 65 HOH HOH B . F 4 HOH 36 94 66 HOH HOH B . F 4 HOH 37 95 68 HOH HOH B . F 4 HOH 38 96 73 HOH HOH B . F 4 HOH 39 97 83 HOH HOH B . F 4 HOH 40 98 84 HOH HOH B . F 4 HOH 41 99 85 HOH HOH B . F 4 HOH 42 100 86 HOH HOH B . F 4 HOH 43 101 87 HOH HOH B . F 4 HOH 44 102 88 HOH HOH B . F 4 HOH 45 103 89 HOH HOH B . F 4 HOH 46 104 95 HOH HOH B . F 4 HOH 47 105 96 HOH HOH B . G 4 HOH 1 218 13 HOH HOH A . G 4 HOH 2 219 14 HOH HOH A . G 4 HOH 3 220 15 HOH HOH A . G 4 HOH 4 221 16 HOH HOH A . G 4 HOH 5 222 22 HOH HOH A . G 4 HOH 6 223 23 HOH HOH A . G 4 HOH 7 224 25 HOH HOH A . G 4 HOH 8 225 26 HOH HOH A . G 4 HOH 9 226 28 HOH HOH A . G 4 HOH 10 227 36 HOH HOH A . G 4 HOH 11 228 37 HOH HOH A . G 4 HOH 12 229 39 HOH HOH A . G 4 HOH 13 230 40 HOH HOH A . G 4 HOH 14 231 41 HOH HOH A . G 4 HOH 15 232 45 HOH HOH A . G 4 HOH 16 233 46 HOH HOH A . G 4 HOH 17 234 48 HOH HOH A . G 4 HOH 18 235 50 HOH HOH A . G 4 HOH 19 236 51 HOH HOH A . G 4 HOH 20 237 52 HOH HOH A . G 4 HOH 21 238 54 HOH HOH A . G 4 HOH 22 239 55 HOH HOH A . G 4 HOH 23 240 56 HOH HOH A . G 4 HOH 24 241 57 HOH HOH A . G 4 HOH 25 242 59 HOH HOH A . G 4 HOH 26 243 60 HOH HOH A . G 4 HOH 27 244 63 HOH HOH A . G 4 HOH 28 245 67 HOH HOH A . G 4 HOH 29 246 69 HOH HOH A . G 4 HOH 30 247 70 HOH HOH A . G 4 HOH 31 248 71 HOH HOH A . G 4 HOH 32 249 72 HOH HOH A . G 4 HOH 33 250 74 HOH HOH A . G 4 HOH 34 251 75 HOH HOH A . G 4 HOH 35 252 76 HOH HOH A . G 4 HOH 36 253 77 HOH HOH A . G 4 HOH 37 254 78 HOH HOH A . G 4 HOH 38 255 79 HOH HOH A . G 4 HOH 39 256 80 HOH HOH A . G 4 HOH 40 257 81 HOH HOH A . G 4 HOH 41 258 82 HOH HOH A . G 4 HOH 42 259 90 HOH HOH A . G 4 HOH 43 260 91 HOH HOH A . G 4 HOH 44 261 92 HOH HOH A . G 4 HOH 45 262 93 HOH HOH A . G 4 HOH 46 263 94 HOH HOH A . G 4 HOH 47 264 97 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 XDS 'data reduction' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1MZP _cell.length_a 156.010 _cell.length_b 156.010 _cell.length_c 90.429 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MZP _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1MZP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 67.20 _exptl_crystal.density_Matthews 3.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG400, Tris HCl, KCl, MgCl2, ph 8.5, VAPOR DIFFUSION, HANGING DROP at 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 400' ? ? ? 1 2 1 'Tris HCl' ? ? ? 1 3 1 KCl ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 2 'PEG 400' ? ? ? 1 6 2 KCl ? ? ? 1 7 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-04-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal focusing monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9762 1.0 2 0.9330 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9762,0.9330 # _reflns.entry_id 1MZP _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 25.00 _reflns.d_resolution_high 2.65 _reflns.number_obs 22839 _reflns.number_all 22839 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 70.0 _reflns.pdbx_redundancy 7.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.65 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 97.2 _reflns_shell.Rmerge_I_obs 0.376 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MZP _refine.ls_number_reflns_obs 19127 _refine.ls_number_reflns_all 19127 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1263310.50 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 2.65 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all 0.259 _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.266 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 952 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 51.9 _refine.aniso_B[1][1] 6.16 _refine.aniso_B[2][2] 6.16 _refine.aniso_B[3][3] -12.33 _refine.aniso_B[1][2] 5.66 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.32442 _refine.solvent_model_param_bsol 32.521 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF 1263310.50 _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1MZP _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.42 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.44 _refine_analyze.Luzzati_sigma_a_free 0.52 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1720 _refine_hist.pdbx_number_atoms_nucleic_acid 1185 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 3002 _refine_hist.d_res_high 2.65 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.39 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.49 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.59 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.75 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.70 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.65 _refine_ls_shell.d_res_low 2.74 _refine_ls_shell.number_reflns_R_work 1740 _refine_ls_shell.R_factor_R_work 0.338 _refine_ls_shell.percent_reflns_obs 97.6 _refine_ls_shell.R_factor_R_free 0.421 _refine_ls_shell.R_factor_R_free_error 0.043 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 94 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1MZP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MZP _struct.title 'Structure of the L1 protuberance in the ribosome' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MZP _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'ribosome, ribosomal protein, RNA-protein complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RL1_SULAC 2 ;LADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP KVVITREELQKLQGQKRPVKKLAIQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVIVKTKD QPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETNLRNIYVKTTMGKAVKVKR ; 5 P35024 ? 2 PDB 1MZP 1 ? ? 1MZP ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MZP A 2 ? 217 ? P35024 5 ? 220 ? 2 217 2 2 1MZP B 1 ? 55 ? 1MZP 1 ? 55 ? 1 55 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1MZP MET A 1 ? UNP P35024 ? ? 'cloning artifact' 1 1 1 1MZP MSE A 41 ? UNP P35024 MET 44 'modified residue' 41 2 1 1MZP ARG A 105 ? UNP P35024 ILE 108 conflict 105 3 1 1MZP MSE A 117 ? UNP P35024 MET 120 'modified residue' 117 4 1 1MZP LEU A 156 ? UNP P35024 ILE 159 conflict 156 5 1 1MZP MSE A 174 ? UNP P35024 MET 177 'modified residue' 174 6 1 1MZP MSE A 209 ? UNP P35024 MET 212 'modified residue' 209 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP B 4 ? SER B 17 ? ASP A 4 SER A 17 1 ? 14 HELX_P HELX_P2 2 ASP B 40 ? GLY B 44 ? ASP A 40 GLY A 44 5 ? 5 HELX_P HELX_P3 3 SER B 69 ? ALA B 79 ? SER A 69 ALA A 79 1 ? 11 HELX_P HELX_P4 4 THR B 86 ? GLN B 94 ? THR A 86 GLN A 94 1 ? 9 HELX_P HELX_P5 5 GLN B 96 ? GLN B 106 ? GLN A 96 GLN A 106 1 ? 11 HELX_P HELX_P6 6 SER B 116 ? LEU B 124 ? SER A 116 LEU A 124 1 ? 9 HELX_P HELX_P7 7 LEU B 124 ? GLY B 129 ? LEU A 124 GLY A 129 1 ? 6 HELX_P HELX_P8 8 PRO B 130 ? GLY B 132 ? PRO A 130 GLY A 132 5 ? 3 HELX_P HELX_P9 9 ILE B 144 ? ARG B 153 ? ILE A 144 ARG A 153 1 ? 10 HELX_P HELX_P10 10 LYS B 175 ? ALA B 194 ? LYS A 175 ALA A 194 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ASP 40 C ? ? ? 1_555 B MSE 41 N ? ? A ASP 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? B MSE 41 C ? ? ? 1_555 B LYS 42 N ? ? A MSE 41 A LYS 42 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? B SER 116 C ? ? ? 1_555 B MSE 117 N ? ? A SER 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? B MSE 117 C ? ? ? 1_555 B ALA 118 N ? ? A MSE 117 A ALA 118 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? B ASP 173 C ? ? ? 1_555 B MSE 174 N ? ? A ASP 173 A MSE 174 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? B MSE 174 C ? ? ? 1_555 B LYS 175 N ? ? A MSE 174 A LYS 175 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? B THR 208 C ? ? ? 1_555 B MSE 209 N ? ? A THR 208 A MSE 209 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? B MSE 209 C ? ? ? 1_555 B GLY 210 N ? ? A MSE 209 A GLY 210 1_555 ? ? ? ? ? ? ? 1.332 ? ? metalc1 metalc ? ? A G 21 O6 ? ? ? 1_555 D MG . MG ? ? B G 21 B MG 57 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 56 B HOH 98 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 57 B HOH 97 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 57 B HOH 99 1_555 ? ? ? ? ? ? ? 2.179 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 55 N3 ? ? B G 1 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 55 O2 ? ? B G 1 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 55 N4 ? ? B G 1 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 54 N3 ? ? B G 2 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 54 O2 ? ? B G 2 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 54 N4 ? ? B G 2 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 53 N3 ? ? B G 3 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 53 O2 ? ? B G 3 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 53 N4 ? ? B G 3 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 52 N3 ? ? B A 4 B U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 52 O4 ? ? B A 4 B U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A U 51 O4 ? ? B U 5 B U 51 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A U 51 N3 ? ? B U 5 B U 51 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 50 N3 ? ? B G 6 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 50 O2 ? ? B G 6 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 50 N4 ? ? B G 6 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 O6 ? ? ? 1_555 A A 40 N6 ? ? B G 8 B A 40 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 41 N6 ? ? B U 9 B A 41 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A A 15 N6 ? ? B A 10 B A 15 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A A 15 N7 ? ? B A 10 B A 15 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A A 42 N1 ? ? B G 11 B A 42 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog22 hydrog ? ? A G 11 N3 ? ? ? 1_555 A A 42 N6 ? ? B G 11 B A 42 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 43 N3 ? ? B A 13 B U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 43 O4 ? ? B A 13 B U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 15 N1 ? ? ? 1_555 A G 39 N2 ? ? B A 15 B G 39 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog26 hydrog ? ? A A 15 N6 ? ? ? 1_555 A G 39 N3 ? ? B A 15 B G 39 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog27 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 49 N3 ? ? B G 16 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 49 O2 ? ? B G 16 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 49 N4 ? ? B G 16 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 48 N3 ? ? B G 17 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 48 O2 ? ? B G 17 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 48 N4 ? ? B G 17 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 47 N1 ? ? B U 18 B A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 47 N6 ? ? B U 18 B A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 46 N3 ? ? B G 19 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 46 O2 ? ? B G 19 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 46 N4 ? ? B G 19 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 45 N3 ? ? B G 20 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 45 O2 ? ? B G 20 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 45 N4 ? ? B G 20 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 21 N2 ? ? ? 1_555 A A 44 N7 ? ? B G 21 B A 44 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A G 21 N3 ? ? ? 1_555 A A 44 N6 ? ? B G 21 B A 44 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog43 hydrog ? ? A A 22 N3 ? ? ? 1_555 A G 33 N2 ? ? B A 22 B G 33 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog44 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 32 N3 ? ? B G 23 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 32 O2 ? ? B G 23 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 32 N4 ? ? B G 23 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 44 N3 ? ? B G 23 B A 44 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 24 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 24 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 24 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 30 N1 ? ? B C 25 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 30 O6 ? ? B C 25 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 30 N2 ? ? B C 25 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 29 N7 ? ? B G 26 B A 29 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog55 hydrog ? ? A G 37 N1 ? ? ? 1_555 A U 43 O4 ? ? B G 37 B U 43 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog56 hydrog ? ? A U 38 N3 ? ? ? 1_555 A A 42 N7 ? ? B U 38 B A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? A U 38 O2 ? ? ? 1_555 A A 42 N6 ? ? B U 38 B A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 21 ? B G 21 ? 1_555 MG ? D MG . ? B MG 57 ? 1_555 O ? F HOH . ? B HOH 97 ? 1_555 78.9 ? 2 O6 ? A G 21 ? B G 21 ? 1_555 MG ? D MG . ? B MG 57 ? 1_555 O ? F HOH . ? B HOH 99 ? 1_555 74.1 ? 3 O ? F HOH . ? B HOH 97 ? 1_555 MG ? D MG . ? B MG 57 ? 1_555 O ? F HOH . ? B HOH 99 ? 1_555 70.7 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE B 41 ? . . . . MSE A 41 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE B 117 ? . . . . MSE A 117 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE B 174 ? . . . . MSE A 174 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE B 209 ? . . . . MSE A 209 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN B 164 ? THR B 171 ? GLN A 164 THR A 171 A 2 SER B 29 ? PHE B 36 ? SER A 29 PHE A 36 A 3 LEU B 200 ? THR B 207 ? LEU A 200 THR A 207 A 4 VAL B 213 ? LYS B 214 ? VAL A 213 LYS A 214 B 1 ARG B 49 ? PRO B 53 ? ARG A 49 PRO A 53 B 2 SER B 154 ? LYS B 158 ? SER A 154 LYS A 158 C 1 VAL B 83 ? VAL B 84 ? VAL A 83 VAL A 84 C 2 VAL B 64 ? VAL B 67 ? VAL A 64 VAL A 67 C 3 TRP B 109 ? ILE B 112 ? TRP A 109 ILE A 112 C 4 PRO B 135 ? PRO B 137 ? PRO A 135 PRO A 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY B 170 ? O GLY A 170 N VAL B 30 ? N VAL A 30 A 2 3 N ILE B 33 ? N ILE A 33 O TYR B 204 ? O TYR A 204 A 3 4 N VAL B 205 ? N VAL A 205 O VAL B 213 ? O VAL A 213 B 1 2 N GLU B 50 ? N GLU A 50 O VAL B 157 ? O VAL A 157 C 1 2 O VAL B 83 ? O VAL A 83 N VAL B 66 ? N VAL A 66 C 2 3 N VAL B 67 ? N VAL A 67 O LEU B 111 ? O LEU A 111 C 3 4 N PHE B 110 ? N PHE A 110 O THR B 136 ? O THR A 136 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 56 ? 1 'BINDING SITE FOR RESIDUE MG B 56' AC2 Software B MG 57 ? 4 'BINDING SITE FOR RESIDUE MG B 57' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 HOH F . ? HOH B 98 . ? 1_555 ? 2 AC2 4 ARG B 105 ? ARG A 105 . ? 1_555 ? 3 AC2 4 G A 21 ? G B 21 . ? 1_555 ? 4 AC2 4 HOH F . ? HOH B 97 . ? 1_555 ? 5 AC2 4 HOH F . ? HOH B 99 . ? 1_555 ? # _pdbx_entry_details.entry_id 1MZP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.523 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.084 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N9 _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 13 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 13 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 13 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 122.90 _pdbx_validate_rmsd_angle.angle_target_value 114.00 _pdbx_validate_rmsd_angle.angle_deviation 8.90 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 42 ? ? -64.31 9.63 2 1 ARG A 49 ? ? -179.58 58.39 3 1 PRO A 68 ? ? -77.80 -133.11 4 1 SER A 145 ? ? -27.79 -54.52 5 1 LYS A 160 ? ? -122.19 -69.13 6 1 ASP A 161 ? ? -147.92 17.07 7 1 ALA A 194 ? ? -171.86 135.50 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A B 13 ? ? 0.115 'SIDE CHAIN' 2 1 G B 26 ? ? 0.054 'SIDE CHAIN' 3 1 G B 39 ? ? 0.060 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MSE 41 A MSE 41 ? MET SELENOMETHIONINE 2 B MSE 117 A MSE 117 ? MET SELENOMETHIONINE 3 B MSE 174 A MSE 174 ? MET SELENOMETHIONINE 4 B MSE 209 A MSE 209 ? MET SELENOMETHIONINE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HOH O O N N 233 HOH H1 H N N 234 HOH H2 H N N 235 ILE N N N N 236 ILE CA C N S 237 ILE C C N N 238 ILE O O N N 239 ILE CB C N S 240 ILE CG1 C N N 241 ILE CG2 C N N 242 ILE CD1 C N N 243 ILE OXT O N N 244 ILE H H N N 245 ILE H2 H N N 246 ILE HA H N N 247 ILE HB H N N 248 ILE HG12 H N N 249 ILE HG13 H N N 250 ILE HG21 H N N 251 ILE HG22 H N N 252 ILE HG23 H N N 253 ILE HD11 H N N 254 ILE HD12 H N N 255 ILE HD13 H N N 256 ILE HXT H N N 257 LEU N N N N 258 LEU CA C N S 259 LEU C C N N 260 LEU O O N N 261 LEU CB C N N 262 LEU CG C N N 263 LEU CD1 C N N 264 LEU CD2 C N N 265 LEU OXT O N N 266 LEU H H N N 267 LEU H2 H N N 268 LEU HA H N N 269 LEU HB2 H N N 270 LEU HB3 H N N 271 LEU HG H N N 272 LEU HD11 H N N 273 LEU HD12 H N N 274 LEU HD13 H N N 275 LEU HD21 H N N 276 LEU HD22 H N N 277 LEU HD23 H N N 278 LEU HXT H N N 279 LYS N N N N 280 LYS CA C N S 281 LYS C C N N 282 LYS O O N N 283 LYS CB C N N 284 LYS CG C N N 285 LYS CD C N N 286 LYS CE C N N 287 LYS NZ N N N 288 LYS OXT O N N 289 LYS H H N N 290 LYS H2 H N N 291 LYS HA H N N 292 LYS HB2 H N N 293 LYS HB3 H N N 294 LYS HG2 H N N 295 LYS HG3 H N N 296 LYS HD2 H N N 297 LYS HD3 H N N 298 LYS HE2 H N N 299 LYS HE3 H N N 300 LYS HZ1 H N N 301 LYS HZ2 H N N 302 LYS HZ3 H N N 303 LYS HXT H N N 304 MET N N N N 305 MET CA C N S 306 MET C C N N 307 MET O O N N 308 MET CB C N N 309 MET CG C N N 310 MET SD S N N 311 MET CE C N N 312 MET OXT O N N 313 MET H H N N 314 MET H2 H N N 315 MET HA H N N 316 MET HB2 H N N 317 MET HB3 H N N 318 MET HG2 H N N 319 MET HG3 H N N 320 MET HE1 H N N 321 MET HE2 H N N 322 MET HE3 H N N 323 MET HXT H N N 324 MG MG MG N N 325 MSE N N N N 326 MSE CA C N S 327 MSE C C N N 328 MSE O O N N 329 MSE OXT O N N 330 MSE CB C N N 331 MSE CG C N N 332 MSE SE SE N N 333 MSE CE C N N 334 MSE H H N N 335 MSE H2 H N N 336 MSE HA H N N 337 MSE HXT H N N 338 MSE HB2 H N N 339 MSE HB3 H N N 340 MSE HG2 H N N 341 MSE HG3 H N N 342 MSE HE1 H N N 343 MSE HE2 H N N 344 MSE HE3 H N N 345 PHE N N N N 346 PHE CA C N S 347 PHE C C N N 348 PHE O O N N 349 PHE CB C N N 350 PHE CG C Y N 351 PHE CD1 C Y N 352 PHE CD2 C Y N 353 PHE CE1 C Y N 354 PHE CE2 C Y N 355 PHE CZ C Y N 356 PHE OXT O N N 357 PHE H H N N 358 PHE H2 H N N 359 PHE HA H N N 360 PHE HB2 H N N 361 PHE HB3 H N N 362 PHE HD1 H N N 363 PHE HD2 H N N 364 PHE HE1 H N N 365 PHE HE2 H N N 366 PHE HZ H N N 367 PHE HXT H N N 368 PRO N N N N 369 PRO CA C N S 370 PRO C C N N 371 PRO O O N N 372 PRO CB C N N 373 PRO CG C N N 374 PRO CD C N N 375 PRO OXT O N N 376 PRO H H N N 377 PRO HA H N N 378 PRO HB2 H N N 379 PRO HB3 H N N 380 PRO HG2 H N N 381 PRO HG3 H N N 382 PRO HD2 H N N 383 PRO HD3 H N N 384 PRO HXT H N N 385 SER N N N N 386 SER CA C N S 387 SER C C N N 388 SER O O N N 389 SER CB C N N 390 SER OG O N N 391 SER OXT O N N 392 SER H H N N 393 SER H2 H N N 394 SER HA H N N 395 SER HB2 H N N 396 SER HB3 H N N 397 SER HG H N N 398 SER HXT H N N 399 THR N N N N 400 THR CA C N S 401 THR C C N N 402 THR O O N N 403 THR CB C N R 404 THR OG1 O N N 405 THR CG2 C N N 406 THR OXT O N N 407 THR H H N N 408 THR H2 H N N 409 THR HA H N N 410 THR HB H N N 411 THR HG1 H N N 412 THR HG21 H N N 413 THR HG22 H N N 414 THR HG23 H N N 415 THR HXT H N N 416 TRP N N N N 417 TRP CA C N S 418 TRP C C N N 419 TRP O O N N 420 TRP CB C N N 421 TRP CG C Y N 422 TRP CD1 C Y N 423 TRP CD2 C Y N 424 TRP NE1 N Y N 425 TRP CE2 C Y N 426 TRP CE3 C Y N 427 TRP CZ2 C Y N 428 TRP CZ3 C Y N 429 TRP CH2 C Y N 430 TRP OXT O N N 431 TRP H H N N 432 TRP H2 H N N 433 TRP HA H N N 434 TRP HB2 H N N 435 TRP HB3 H N N 436 TRP HD1 H N N 437 TRP HE1 H N N 438 TRP HE3 H N N 439 TRP HZ2 H N N 440 TRP HZ3 H N N 441 TRP HH2 H N N 442 TRP HXT H N N 443 TYR N N N N 444 TYR CA C N S 445 TYR C C N N 446 TYR O O N N 447 TYR CB C N N 448 TYR CG C Y N 449 TYR CD1 C Y N 450 TYR CD2 C Y N 451 TYR CE1 C Y N 452 TYR CE2 C Y N 453 TYR CZ C Y N 454 TYR OH O N N 455 TYR OXT O N N 456 TYR H H N N 457 TYR H2 H N N 458 TYR HA H N N 459 TYR HB2 H N N 460 TYR HB3 H N N 461 TYR HD1 H N N 462 TYR HD2 H N N 463 TYR HE1 H N N 464 TYR HE2 H N N 465 TYR HH H N N 466 TYR HXT H N N 467 U OP3 O N N 468 U P P N N 469 U OP1 O N N 470 U OP2 O N N 471 U "O5'" O N N 472 U "C5'" C N N 473 U "C4'" C N R 474 U "O4'" O N N 475 U "C3'" C N S 476 U "O3'" O N N 477 U "C2'" C N R 478 U "O2'" O N N 479 U "C1'" C N R 480 U N1 N N N 481 U C2 C N N 482 U O2 O N N 483 U N3 N N N 484 U C4 C N N 485 U O4 O N N 486 U C5 C N N 487 U C6 C N N 488 U HOP3 H N N 489 U HOP2 H N N 490 U "H5'" H N N 491 U "H5''" H N N 492 U "H4'" H N N 493 U "H3'" H N N 494 U "HO3'" H N N 495 U "H2'" H N N 496 U "HO2'" H N N 497 U "H1'" H N N 498 U H3 H N N 499 U H5 H N N 500 U H6 H N N 501 VAL N N N N 502 VAL CA C N S 503 VAL C C N N 504 VAL O O N N 505 VAL CB C N N 506 VAL CG1 C N N 507 VAL CG2 C N N 508 VAL OXT O N N 509 VAL H H N N 510 VAL H2 H N N 511 VAL HA H N N 512 VAL HB H N N 513 VAL HG11 H N N 514 VAL HG12 H N N 515 VAL HG13 H N N 516 VAL HG21 H N N 517 VAL HG22 H N N 518 VAL HG23 H N N 519 VAL HXT H N N 520 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HOH O H1 sing N N 231 HOH O H2 sing N N 232 ILE N CA sing N N 233 ILE N H sing N N 234 ILE N H2 sing N N 235 ILE CA C sing N N 236 ILE CA CB sing N N 237 ILE CA HA sing N N 238 ILE C O doub N N 239 ILE C OXT sing N N 240 ILE CB CG1 sing N N 241 ILE CB CG2 sing N N 242 ILE CB HB sing N N 243 ILE CG1 CD1 sing N N 244 ILE CG1 HG12 sing N N 245 ILE CG1 HG13 sing N N 246 ILE CG2 HG21 sing N N 247 ILE CG2 HG22 sing N N 248 ILE CG2 HG23 sing N N 249 ILE CD1 HD11 sing N N 250 ILE CD1 HD12 sing N N 251 ILE CD1 HD13 sing N N 252 ILE OXT HXT sing N N 253 LEU N CA sing N N 254 LEU N H sing N N 255 LEU N H2 sing N N 256 LEU CA C sing N N 257 LEU CA CB sing N N 258 LEU CA HA sing N N 259 LEU C O doub N N 260 LEU C OXT sing N N 261 LEU CB CG sing N N 262 LEU CB HB2 sing N N 263 LEU CB HB3 sing N N 264 LEU CG CD1 sing N N 265 LEU CG CD2 sing N N 266 LEU CG HG sing N N 267 LEU CD1 HD11 sing N N 268 LEU CD1 HD12 sing N N 269 LEU CD1 HD13 sing N N 270 LEU CD2 HD21 sing N N 271 LEU CD2 HD22 sing N N 272 LEU CD2 HD23 sing N N 273 LEU OXT HXT sing N N 274 LYS N CA sing N N 275 LYS N H sing N N 276 LYS N H2 sing N N 277 LYS CA C sing N N 278 LYS CA CB sing N N 279 LYS CA HA sing N N 280 LYS C O doub N N 281 LYS C OXT sing N N 282 LYS CB CG sing N N 283 LYS CB HB2 sing N N 284 LYS CB HB3 sing N N 285 LYS CG CD sing N N 286 LYS CG HG2 sing N N 287 LYS CG HG3 sing N N 288 LYS CD CE sing N N 289 LYS CD HD2 sing N N 290 LYS CD HD3 sing N N 291 LYS CE NZ sing N N 292 LYS CE HE2 sing N N 293 LYS CE HE3 sing N N 294 LYS NZ HZ1 sing N N 295 LYS NZ HZ2 sing N N 296 LYS NZ HZ3 sing N N 297 LYS OXT HXT sing N N 298 MET N CA sing N N 299 MET N H sing N N 300 MET N H2 sing N N 301 MET CA C sing N N 302 MET CA CB sing N N 303 MET CA HA sing N N 304 MET C O doub N N 305 MET C OXT sing N N 306 MET CB CG sing N N 307 MET CB HB2 sing N N 308 MET CB HB3 sing N N 309 MET CG SD sing N N 310 MET CG HG2 sing N N 311 MET CG HG3 sing N N 312 MET SD CE sing N N 313 MET CE HE1 sing N N 314 MET CE HE2 sing N N 315 MET CE HE3 sing N N 316 MET OXT HXT sing N N 317 MSE N CA sing N N 318 MSE N H sing N N 319 MSE N H2 sing N N 320 MSE CA C sing N N 321 MSE CA CB sing N N 322 MSE CA HA sing N N 323 MSE C O doub N N 324 MSE C OXT sing N N 325 MSE OXT HXT sing N N 326 MSE CB CG sing N N 327 MSE CB HB2 sing N N 328 MSE CB HB3 sing N N 329 MSE CG SE sing N N 330 MSE CG HG2 sing N N 331 MSE CG HG3 sing N N 332 MSE SE CE sing N N 333 MSE CE HE1 sing N N 334 MSE CE HE2 sing N N 335 MSE CE HE3 sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 U OP3 P sing N N 458 U OP3 HOP3 sing N N 459 U P OP1 doub N N 460 U P OP2 sing N N 461 U P "O5'" sing N N 462 U OP2 HOP2 sing N N 463 U "O5'" "C5'" sing N N 464 U "C5'" "C4'" sing N N 465 U "C5'" "H5'" sing N N 466 U "C5'" "H5''" sing N N 467 U "C4'" "O4'" sing N N 468 U "C4'" "C3'" sing N N 469 U "C4'" "H4'" sing N N 470 U "O4'" "C1'" sing N N 471 U "C3'" "O3'" sing N N 472 U "C3'" "C2'" sing N N 473 U "C3'" "H3'" sing N N 474 U "O3'" "HO3'" sing N N 475 U "C2'" "O2'" sing N N 476 U "C2'" "C1'" sing N N 477 U "C2'" "H2'" sing N N 478 U "O2'" "HO2'" sing N N 479 U "C1'" N1 sing N N 480 U "C1'" "H1'" sing N N 481 U N1 C2 sing N N 482 U N1 C6 sing N N 483 U C2 O2 doub N N 484 U C2 N3 sing N N 485 U N3 C4 sing N N 486 U N3 H3 sing N N 487 U C4 O4 doub N N 488 U C4 C5 sing N N 489 U C5 C6 doub N N 490 U C5 H5 sing N N 491 U C6 H6 sing N N 492 VAL N CA sing N N 493 VAL N H sing N N 494 VAL N H2 sing N N 495 VAL CA C sing N N 496 VAL CA CB sing N N 497 VAL CA HA sing N N 498 VAL C O doub N N 499 VAL C OXT sing N N 500 VAL CB CG1 sing N N 501 VAL CB CG2 sing N N 502 VAL CB HB sing N N 503 VAL CG1 HG11 sing N N 504 VAL CG1 HG12 sing N N 505 VAL CG1 HG13 sing N N 506 VAL CG2 HG21 sing N N 507 VAL CG2 HG22 sing N N 508 VAL CG2 HG23 sing N N 509 VAL OXT HXT sing N N 510 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MZP 'double helix' 1MZP 'a-form double helix' 1MZP 'parallel strands' 1MZP tetraloop 1MZP 'bulge loop' 1MZP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 55 1_555 -0.986 -0.061 -0.636 -18.966 -15.755 6.218 1 B_G1:C55_B B 1 ? B 55 ? 19 1 1 A G 2 1_555 A C 54 1_555 -0.375 -0.395 0.152 -5.189 -6.253 -3.386 2 B_G2:C54_B B 2 ? B 54 ? 19 1 1 A G 3 1_555 A C 53 1_555 -0.507 -0.349 0.037 -0.174 -6.586 -0.430 3 B_G3:C53_B B 3 ? B 53 ? 19 1 1 A A 4 1_555 A U 52 1_555 0.088 -0.367 0.120 1.105 -18.313 8.089 4 B_A4:U52_B B 4 ? B 52 ? 20 1 1 A U 5 1_555 A U 51 1_555 2.373 -1.836 0.495 -6.410 -17.284 16.271 5 B_U5:U51_B B 5 ? B 51 ? 16 1 1 A G 6 1_555 A C 50 1_555 -0.408 -0.301 -0.164 -5.157 -6.204 2.147 6 B_G6:C50_B B 6 ? B 50 ? 19 1 1 A G 16 1_555 A C 49 1_555 -0.293 -0.057 0.154 -7.520 -4.779 1.878 7 B_G16:C49_B B 16 ? B 49 ? 19 1 1 A G 17 1_555 A C 48 1_555 0.002 -0.219 0.004 -12.522 -11.523 2.127 8 B_G17:C48_B B 17 ? B 48 ? 19 1 1 A U 18 1_555 A A 47 1_555 -0.245 -0.135 0.383 -5.671 -10.320 3.923 9 B_U18:A47_B B 18 ? B 47 ? 20 1 1 A G 19 1_555 A C 46 1_555 -0.337 -0.161 0.128 1.322 -9.431 4.012 10 B_G19:C46_B B 19 ? B 46 ? 19 1 1 A G 20 1_555 A C 45 1_555 -0.030 -0.256 -0.171 -4.447 -20.143 4.386 11 B_G20:C45_B B 20 ? B 45 ? 19 1 1 A G 21 1_555 A A 44 1_555 6.801 -4.524 0.082 -12.814 -7.673 -8.883 12 B_G21:A44_B B 21 ? B 44 ? 11 10 1 A A 22 1_555 A G 33 1_555 2.516 7.089 -1.802 50.850 -9.092 153.344 13 B_A22:G33_B B 22 ? B 33 ? ? 6 1 A G 23 1_555 A C 32 1_555 -0.676 -0.117 -0.383 -9.149 -4.859 6.776 14 B_G23:C32_B B 23 ? B 32 ? 19 1 1 A G 8 1_555 A A 40 1_555 -3.153 5.517 -0.649 -23.679 -0.863 -159.611 15 B_G8:A40_B B 8 ? B 40 ? ? ? 1 A U 9 1_555 A A 41 1_555 -0.246 4.141 -0.540 -21.390 4.494 -162.931 16 B_U9:A41_B B 9 ? B 41 ? ? ? 1 A G 11 1_555 A A 42 1_555 2.966 -4.166 -0.209 16.345 7.377 -75.508 17 B_G11:A42_B B 11 ? B 42 ? 10 6 1 A A 13 1_555 A U 43 1_555 -0.453 -0.107 0.128 -0.434 -8.758 0.162 18 B_A13:U43_B B 13 ? B 43 ? 20 1 1 A A 15 1_555 A G 39 1_555 -3.335 3.825 -0.058 -20.707 -3.298 68.759 19 B_A15:G39_B B 15 ? B 39 ? 10 6 1 A C 24 1_555 A G 31 1_555 0.271 -0.184 -0.218 -5.922 -6.675 2.200 20 B_C24:G31_B B 24 ? B 31 ? 19 1 1 A C 25 1_555 A G 30 1_555 0.536 -0.183 -0.177 3.113 8.027 1.107 21 B_C25:G30_B B 25 ? B 30 ? 19 1 1 A G 26 1_555 A A 29 1_555 6.821 -5.289 1.039 15.932 -1.942 -9.253 22 B_G26:A29_B B 26 ? B 29 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 55 1_555 A G 2 1_555 A C 54 1_555 -0.721 -1.055 2.953 -11.412 8.784 38.976 -2.337 -0.080 2.759 12.652 16.437 41.455 1 BB_G1G2:C54C55_BB B 1 ? B 55 ? B 2 ? B 54 ? 1 A G 2 1_555 A C 54 1_555 A G 3 1_555 A C 53 1_555 0.119 -1.878 3.038 1.833 7.970 30.723 -4.686 0.071 2.488 14.719 -3.386 31.768 2 BB_G2G3:C53C54_BB B 2 ? B 54 ? B 3 ? B 53 ? 1 A G 3 1_555 A C 53 1_555 A A 4 1_555 A U 52 1_555 1.014 -2.002 3.112 2.248 4.644 29.526 -4.750 -1.535 2.838 9.026 -4.370 29.964 3 BB_G3A4:U52C53_BB B 3 ? B 53 ? B 4 ? B 52 ? 1 A A 4 1_555 A U 52 1_555 A U 5 1_555 A U 51 1_555 0.775 -0.882 3.303 0.716 5.890 47.091 -1.571 -0.905 3.188 7.338 -0.891 47.442 4 BB_A4U5:U51U52_BB B 4 ? B 52 ? B 5 ? B 51 ? 1 A U 5 1_555 A U 51 1_555 A G 6 1_555 A C 50 1_555 -0.488 -1.658 2.882 14.651 18.041 26.330 -4.688 2.379 1.143 32.664 -26.527 34.984 5 BB_U5G6:C50U51_BB B 5 ? B 51 ? B 6 ? B 50 ? 1 A G 6 1_555 A C 50 1_555 A G 16 1_555 A C 49 1_555 -0.129 -3.167 3.179 -1.123 6.518 21.603 -10.069 -0.012 2.146 16.888 2.909 22.582 6 BB_G6G16:C49C50_BB B 6 ? B 50 ? B 16 ? B 49 ? 1 A G 16 1_555 A C 49 1_555 A G 17 1_555 A C 48 1_555 0.490 -2.278 3.307 3.709 7.932 30.348 -5.566 -0.258 2.681 14.769 -6.906 31.557 7 BB_G16G17:C48C49_BB B 16 ? B 49 ? B 17 ? B 48 ? 1 A G 17 1_555 A C 48 1_555 A U 18 1_555 A A 47 1_555 0.160 -1.204 3.064 -2.140 -1.100 32.007 -1.991 -0.652 3.085 -1.991 3.874 32.095 8 BB_G17U18:A47C48_BB B 17 ? B 48 ? B 18 ? B 47 ? 1 A U 18 1_555 A A 47 1_555 A G 19 1_555 A C 46 1_555 -0.860 -1.731 2.743 -1.370 12.528 28.807 -4.939 1.400 1.883 23.794 2.602 31.390 9 BB_U18G19:C46A47_BB B 18 ? B 47 ? B 19 ? B 46 ? 1 A G 19 1_555 A C 46 1_555 A G 20 1_555 A C 45 1_555 0.186 -1.593 3.541 0.573 6.054 33.640 -3.708 -0.222 3.216 10.355 -0.980 34.170 10 BB_G19G20:C45C46_BB B 19 ? B 46 ? B 20 ? B 45 ? 1 A G 20 1_555 A C 45 1_555 A G 21 1_555 A A 44 1_555 -0.122 -0.577 3.725 6.525 11.294 67.584 -0.984 0.381 3.578 10.058 -5.811 68.684 11 BB_G20G21:A44C45_BB B 20 ? B 45 ? B 21 ? B 44 ? 1 A G 21 1_555 A A 44 1_555 A A 22 1_555 A G 33 1_555 -4.225 -3.663 4.278 0.709 35.738 -93.808 1.538 -2.763 5.146 -23.821 0.472 -98.879 12 BB_G21A22:G33A44_BB B 21 ? B 44 ? B 22 ? B 33 ? 1 A A 22 1_555 A G 33 1_555 A G 23 1_555 A C 32 1_555 -2.165 -3.576 3.102 83.452 -120.528 90.082 -0.727 1.867 3.422 -64.140 -44.410 156.569 13 BB_A22G23:C32G33_BB B 22 ? B 33 ? B 23 ? B 32 ? 1 A G 8 1_555 A A 40 1_555 A U 9 1_555 A A 41 1_555 -0.319 -0.440 3.423 1.878 5.709 47.791 -1.004 0.543 3.338 7.014 -2.307 48.145 14 BB_G8U9:A41A40_BB B 8 ? B 40 ? B 9 ? B 41 ? 1 A U 9 1_555 A A 41 1_555 A G 11 1_555 A A 42 1_555 0.646 -2.170 6.347 8.570 6.350 58.789 -2.793 0.177 6.137 6.411 -8.652 59.663 15 BB_U9G11:A42A41_BB B 9 ? B 41 ? B 11 ? B 42 ? 1 A G 11 1_555 A A 42 1_555 A A 13 1_555 A U 43 1_555 -3.318 1.924 -1.584 143.848 90.705 -46.740 -0.863 -1.826 1.004 -46.950 74.458 -170.875 16 BB_G11A13:U43A42_BB B 11 ? B 42 ? B 13 ? B 43 ? 1 A C 24 1_555 A G 31 1_555 A C 25 1_555 A G 30 1_555 -0.390 -1.544 3.149 -1.258 7.186 31.005 -4.014 0.502 2.745 13.214 2.313 31.831 17 BB_C24C25:G30G31_BB B 24 ? B 31 ? B 25 ? B 30 ? 1 A C 25 1_555 A G 30 1_555 A G 26 1_555 A A 29 1_555 -1.416 -0.883 2.905 -1.655 12.245 50.144 -1.738 1.531 2.677 14.201 1.919 51.548 18 BB_C25G26:A29G30_BB B 25 ? B 30 ? B 26 ? B 29 ? # _atom_sites.entry_id 1MZP _atom_sites.fract_transf_matrix[1][1] 0.006410 _atom_sites.fract_transf_matrix[1][2] 0.003701 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007401 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011058 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_