HEADER RIBOSOME 09-OCT-02 1MZP TITLE STRUCTURE OF THE L1 PROTUBERANCE IN THE RIBOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRAGMENT OF 23S RRNA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 50S RIBOSOMAL PROTEIN L1P; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIS OF THE RNA FRAGMENT FROM THE PLASMID PDD55; SOURCE 4 SEQUENCE FROM CELL-FREE(IN VITRO) SYSTEM WITHOUT LIVING ORGANISM.; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 7 ORGANISM_TAXID: 2285; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PSACL1.4; SOURCE 13 OTHER_DETAILS: AUTHOR STATES TO AVOID THE POTENTIAL MISINCORPORATION SOURCE 14 OF LYSINE INSTEAD OF ARGININE, THE HOST STRAIN WAS COTRANSFORMED SOURCE 15 WITH PUBS520, A PLASMID CARRYING THE GENE FOR TRNA(ARG)AGA-AGG. KEYWDS RIBOSOME, RIBOSOMAL PROTEIN, RNA-PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.NIKULIN,I.ELISEIKINA,S.TISHCHENKO,N.NEVSKAYA,N.DAVYDOVA, AUTHOR 2 O.PLATONOVA,W.PIENDL,M.SELMER,A.LILJAS,R.ZIMMERMANN,M.GARBER, AUTHOR 3 S.NIKONOV REVDAT 6 16-OCT-24 1MZP 1 REMARK SEQADV LINK REVDAT 5 24-FEB-09 1MZP 1 VERSN REVDAT 4 18-JAN-05 1MZP 1 JRNL REVDAT 3 03-FEB-04 1MZP 1 REMARK REVDAT 2 25-MAR-03 1MZP 1 SOURCE REVDAT 1 21-JAN-03 1MZP 0 JRNL AUTH A.NIKULIN,I.ELISEIKINA,S.TISHCHENKO,N.NEVSKAYA,N.DAVYDOVA, JRNL AUTH 2 O.PLATONOVA,W.PIENDL,M.SELMER,A.LILJAS,D.DRYGIN, JRNL AUTH 3 R.ZIMMERMANN,M.GARBER,S.NIKONOV JRNL TITL STRUCTURE OF THE L1 PROTUBERANCE IN THE RIBOSOME. JRNL REF NAT.STRUCT.BIOL. V. 10 104 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12514741 JRNL DOI 10.1038/NSB886 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1263310.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 952 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1740 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 94 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.043 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1720 REMARK 3 NUCLEIC ACID ATOMS : 1185 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.16000 REMARK 3 B22 (A**2) : 6.16000 REMARK 3 B33 (A**2) : -12.33000 REMARK 3 B12 (A**2) : 5.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.390 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.490 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.590 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.750 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.700 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 32.52 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762,0.9330 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL FOCUSING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, TRIS HCL, KCL, MGCL2, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP AT 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.28600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.14300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.21450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.07150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.35750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.28600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 30.14300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.07150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.21450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.35750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 P G B 1 OP3 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B 13 N9 - C1' - C2' ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 42 9.63 -64.31 REMARK 500 ARG A 49 58.39 -179.58 REMARK 500 PRO A 68 -133.11 -77.80 REMARK 500 SER A 145 -54.52 -27.79 REMARK 500 LYS A 160 -69.13 -122.19 REMARK 500 ASP A 161 17.07 -147.92 REMARK 500 ALA A 194 135.50 -171.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 A B 13 0.12 SIDE CHAIN REMARK 500 G B 26 0.05 SIDE CHAIN REMARK 500 G B 39 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 57 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 21 O6 REMARK 620 2 HOH B 97 O 78.9 REMARK 620 3 HOH B 99 O 74.1 70.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 56 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 57 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AD2 RELATED DB: PDB REMARK 900 RIBOSOMAL PROTEIN L1 FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 1CSJ RELATED DB: PDB REMARK 900 RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: 1DWU RELATED DB: PDB REMARK 900 RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS THERMOLITHOTROPHICUS REMARK 900 RELATED ID: 1JJ2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA REMARK 900 MARISMORTUI AT 2.4 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1GIY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION REMARK 900 RELATED ID: 1LNR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS REMARK 900 RADIODURANS RIBOSOME DBREF 1MZP A 2 217 UNP P35024 RL1_SULAC 5 220 DBREF 1MZP B 1 55 PDB 1MZP 1MZP 1 55 SEQADV 1MZP MET A 1 UNP P35024 CLONING ARTIFACT SEQADV 1MZP MSE A 41 UNP P35024 MET 44 MODIFIED RESIDUE SEQADV 1MZP ARG A 105 UNP P35024 ILE 108 CONFLICT SEQADV 1MZP MSE A 117 UNP P35024 MET 120 MODIFIED RESIDUE SEQADV 1MZP LEU A 156 UNP P35024 ILE 159 CONFLICT SEQADV 1MZP MSE A 174 UNP P35024 MET 177 MODIFIED RESIDUE SEQADV 1MZP MSE A 209 UNP P35024 MET 212 MODIFIED RESIDUE SEQRES 1 B 55 G G G A U G C G U A G G A SEQRES 2 B 55 U A G G U G G G A G C C G SEQRES 3 B 55 C A A G G C G C C G G U G SEQRES 4 B 55 A A A U A C C A C C C U U SEQRES 5 B 55 C C C SEQRES 1 A 217 MET LEU ALA ASP LYS GLU SER LEU ILE GLU ALA LEU LYS SEQRES 2 A 217 LEU ALA LEU SER THR GLU TYR ASN VAL LYS ARG ASN PHE SEQRES 3 A 217 THR GLN SER VAL GLU ILE ILE LEU THR PHE LYS GLY ILE SEQRES 4 A 217 ASP MSE LYS LYS GLY ASP LEU LYS LEU ARG GLU ILE VAL SEQRES 5 A 217 PRO LEU PRO LYS GLN PRO SER LYS ALA LYS ARG VAL LEU SEQRES 6 A 217 VAL VAL PRO SER SER GLU GLN LEU GLU TYR ALA LYS LYS SEQRES 7 A 217 ALA SER PRO LYS VAL VAL ILE THR ARG GLU GLU LEU GLN SEQRES 8 A 217 LYS LEU GLN GLY GLN LYS ARG PRO VAL LYS LYS LEU ALA SEQRES 9 A 217 ARG GLN ASN GLU TRP PHE LEU ILE ASN GLN GLU SER MSE SEQRES 10 A 217 ALA LEU ALA GLY ARG ILE LEU GLY PRO ALA LEU GLY PRO SEQRES 11 A 217 ARG GLY LYS PHE PRO THR PRO LEU PRO ASN THR ALA ASP SEQRES 12 A 217 ILE SER GLU TYR ILE ASN ARG PHE LYS ARG SER VAL LEU SEQRES 13 A 217 VAL LYS THR LYS ASP GLN PRO GLN VAL GLN VAL PHE ILE SEQRES 14 A 217 GLY THR GLU ASP MSE LYS PRO GLU ASP LEU ALA GLU ASN SEQRES 15 A 217 ALA ILE ALA VAL LEU ASN ALA ILE GLU ASN LYS ALA LYS SEQRES 16 A 217 VAL GLU THR ASN LEU ARG ASN ILE TYR VAL LYS THR THR SEQRES 17 A 217 MSE GLY LYS ALA VAL LYS VAL LYS ARG MODRES 1MZP MSE A 41 MET SELENOMETHIONINE MODRES 1MZP MSE A 117 MET SELENOMETHIONINE MODRES 1MZP MSE A 174 MET SELENOMETHIONINE MODRES 1MZP MSE A 209 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 117 8 HET MSE A 174 8 HET MSE A 209 8 HET MG B 56 1 HET MG B 57 1 HET MG B 58 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 2 MSE 4(C5 H11 N O2 SE) FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *94(H2 O) HELIX 1 1 ASP A 4 SER A 17 1 14 HELIX 2 2 ASP A 40 GLY A 44 5 5 HELIX 3 3 SER A 69 ALA A 79 1 11 HELIX 4 4 THR A 86 GLN A 94 1 9 HELIX 5 5 GLN A 96 GLN A 106 1 11 HELIX 6 6 SER A 116 LEU A 124 1 9 HELIX 7 7 LEU A 124 GLY A 129 1 6 HELIX 8 8 PRO A 130 GLY A 132 5 3 HELIX 9 9 ILE A 144 ARG A 153 1 10 HELIX 10 10 LYS A 175 ALA A 194 1 20 SHEET 1 A 4 GLN A 164 THR A 171 0 SHEET 2 A 4 SER A 29 PHE A 36 -1 N VAL A 30 O GLY A 170 SHEET 3 A 4 LEU A 200 THR A 207 -1 O TYR A 204 N ILE A 33 SHEET 4 A 4 VAL A 213 LYS A 214 -1 O VAL A 213 N VAL A 205 SHEET 1 B 2 ARG A 49 PRO A 53 0 SHEET 2 B 2 SER A 154 LYS A 158 -1 O VAL A 157 N GLU A 50 SHEET 1 C 4 VAL A 83 VAL A 84 0 SHEET 2 C 4 VAL A 64 VAL A 67 1 N VAL A 66 O VAL A 83 SHEET 3 C 4 TRP A 109 ILE A 112 1 O LEU A 111 N VAL A 67 SHEET 4 C 4 PRO A 135 PRO A 137 1 O THR A 136 N PHE A 110 LINK C ASP A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N LYS A 42 1555 1555 1.33 LINK C SER A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N ALA A 118 1555 1555 1.33 LINK C ASP A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N LYS A 175 1555 1555 1.33 LINK C THR A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N GLY A 210 1555 1555 1.33 LINK O6 G B 21 MG MG B 57 1555 1555 2.20 LINK MG MG B 56 O HOH B 98 1555 1555 2.10 LINK MG MG B 57 O HOH B 97 1555 1555 2.09 LINK MG MG B 57 O HOH B 99 1555 1555 2.18 SITE 1 AC1 1 HOH B 98 SITE 1 AC2 4 ARG A 105 G B 21 HOH B 97 HOH B 99 CRYST1 156.010 156.010 90.429 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006410 0.003701 0.000000 0.00000 SCALE2 0.000000 0.007401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011058 0.00000