HEADER BINDING PROTEIN 15-OCT-02 1N0S TITLE ENGINEERED LIPOCALIN FLUA IN COMPLEX WITH FLUORESCEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILIN-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BBP, ANTICALIN FLUA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PIERIS BRASSICAE; SOURCE 3 ORGANISM_COMMON: LARGE CABBAGE WHITE; SOURCE 4 ORGANISM_TAXID: 7116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBBP21-FLUA KEYWDS PIERIS BRASSICAE, LIPOCALIN, ANTICALIN, PROTEIN ENGINEERING, KEYWDS 2 FLUORESCEIN, BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.P.KORNDOERFER,A.SKERRA REVDAT 4 11-OCT-17 1N0S 1 REMARK REVDAT 3 24-FEB-09 1N0S 1 VERSN REVDAT 2 11-JAN-05 1N0S 1 JRNL REMARK MASTER REVDAT 1 05-AUG-03 1N0S 0 JRNL AUTH I.P.KORNDORFER,G.BESTE,A.SKERRA JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF AN "ANTICALIN" WITH TAILORED JRNL TITL 2 SPECIFICITY FOR FLUORESCEIN REVEALS HIGH STRUCTURAL JRNL TITL 3 PLASTICITY OF THE LIPOCALIN LOOP REGION. JRNL REF PROTEINS V. 53 121 2003 JRNL REFN ISSN 0887-3585 JRNL PMID 12945055 JRNL DOI 10.1002/PROT.10497 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 27943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2068 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.365 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2930 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3984 ; 2.671 ; 1.914 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 5.472 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2282 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 979 ; 0.240 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 258 ; 0.182 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.273 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.248 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1710 ; 2.072 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2758 ; 3.459 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1220 ; 2.454 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1226 ; 3.858 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 32 6 REMARK 3 1 B 1 B 32 6 REMARK 3 2 A 41 A 48 6 REMARK 3 2 B 41 B 48 6 REMARK 3 3 A 54 A 62 6 REMARK 3 3 B 54 B 62 6 REMARK 3 4 A 67 A 118 6 REMARK 3 4 B 67 B 118 6 REMARK 3 5 A 121 A 132 6 REMARK 3 5 B 121 B 132 6 REMARK 3 6 A 143 A 151 6 REMARK 3 6 B 143 B 151 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1009 ; 0.30 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1009 ; 1.31 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1N0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL MAXFLUX REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 5.390 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 17.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.73 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1KXO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M (NH4)2SO4, 2% (W/V) PEG 400, 10 REMARK 280 MM HEPES/NAOH, PH 8.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298 KK REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.51950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FLUA IS A MONOMER IN SOLUTION. THE CRYSTALLOGRAPHIC DIMER REMARK 300 HAS PROBABLY NO PHYSIOLOGICAL RELEVANCE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 174 REMARK 465 SER A 175 REMARK 465 ASN A 176 REMARK 465 TRP A 177 REMARK 465 SER A 178 REMARK 465 HIS A 179 REMARK 465 PRO A 180 REMARK 465 GLN A 181 REMARK 465 PHE A 182 REMARK 465 GLU A 183 REMARK 465 LYS A 184 REMARK 465 ASN B 174 REMARK 465 SER B 175 REMARK 465 ASN B 176 REMARK 465 TRP B 177 REMARK 465 SER B 178 REMARK 465 HIS B 179 REMARK 465 PRO B 180 REMARK 465 GLN B 181 REMARK 465 PHE B 182 REMARK 465 GLU B 183 REMARK 465 LYS B 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 95 O1 SO4 B 185 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 1 CB - CG - OD2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR A 39 CA - C - N ANGL. DEV. = 15.8 DEGREES REMARK 500 TYR A 39 O - C - N ANGL. DEV. = -11.3 DEGREES REMARK 500 GLY A 40 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG A 58 CD - NE - CZ ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 126 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ASP A 126 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = -20.8 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = 19.3 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 164 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 1 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TYR B 39 CA - C - N ANGL. DEV. = 15.7 DEGREES REMARK 500 TYR B 39 O - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 GLY B 40 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG B 58 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG B 58 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 58 NE - CZ - NH2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ASP B 60 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 60 CB - CG - OD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 MET B 69 CA - CB - CG ANGL. DEV. = 11.0 DEGREES REMARK 500 MET B 69 CB - CG - SD ANGL. DEV. = 21.3 DEGREES REMARK 500 ARG B 95 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 126 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP B 126 CB - CG - OD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 107 -29.49 -155.72 REMARK 500 ASP A 120 -80.13 -83.99 REMARK 500 CYS B 42 79.91 -151.39 REMARK 500 HIS B 63 56.85 39.55 REMARK 500 LYS B 107 -36.29 -155.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLU A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLU B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBP RELATED DB: PDB REMARK 900 BILIN-BINDING PROTEIN REMARK 900 RELATED ID: 1KXO RELATED DB: PDB REMARK 900 ENGINEERED LIPOCALIN DIGA16 : APO-FORM REMARK 900 RELATED ID: 1LNM RELATED DB: PDB REMARK 900 ENGINEERED LIPOCALIN DIGA16 IN COMPLEX WITH DIGITOXIGENIN REMARK 900 RELATED ID: 1LKE RELATED DB: PDB REMARK 900 ENGINEERED LIPOCALIN DIGA16 IN COMPLEX WITH DIGOXIGENIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 SWISS-PROT ENTRY P09464 BBP_PIEBR IS THE SEQUENCE REMARK 999 OF THE BILIN-BINDING PROTEIN (BBP) FROM P. BRASSICAE, REMARK 999 FROM WICH THIS VARIANT WAS CREATED. THEREFORE, REMARK 999 THERE ARE A NUMBER OF RESIDUES WHICH DO REMARK 999 NOT MATCH THE SWISS-PROT DATABASE SEQUENCE. DBREF 1N0S A 1 174 UNP P09464 BBP_PIEBR 16 189 DBREF 1N0S B 1 174 UNP P09464 BBP_PIEBR 16 189 SEQADV 1N0S ASP A 1 UNP P09464 ASN 16 SEE REMARK 999 SEQADV 1N0S GLN A 21 UNP P09464 ASN 36 SEE REMARK 999 SEQADV 1N0S SER A 34 UNP P09464 ASN 49 SEE REMARK 999 SEQADV 1N0S PRO A 35 UNP P09464 SER 50 SEE REMARK 999 SEQADV 1N0S ASN A 36 UNP P09464 VAL 51 SEE REMARK 999 SEQADV 1N0S GLY A 37 UNP P09464 GLU 52 SEE REMARK 999 SEQADV 1N0S ARG A 58 UNP P09464 ASN 73 SEE REMARK 999 SEQADV 1N0S ASP A 60 UNP P09464 HIS 75 SEE REMARK 999 SEQADV 1N0S MET A 69 UNP P09464 ILE 84 SEE REMARK 999 SEQADV 1N0S SER A 87 UNP P09464 LYS 102 SEE REMARK 999 SEQADV 1N0S ARG A 88 UNP P09464 LEU 103 SEE REMARK 999 SEQADV 1N0S VAL A 90 UNP P09464 TYR 105 SEE REMARK 999 SEQADV 1N0S TYR A 93 UNP P09464 VAL 108 SEE REMARK 999 SEQADV 1N0S ARG A 95 UNP P09464 LYS 110 SEE REMARK 999 SEQADV 1N0S LYS A 96 UNP P09464 GLU 111 SEE REMARK 999 SEQADV 1N0S THR A 97 UNP P09464 ASN 112 SEE REMARK 999 SEQADV 1N0S SER A 114 UNP P09464 TYR 129 SEE REMARK 999 SEQADV 1N0S ARG A 116 UNP P09464 LYS 131 SEE REMARK 999 SEQADV 1N0S TRP A 125 UNP P09464 GLN 140 SEE REMARK 999 SEQADV 1N0S HIS A 127 UNP P09464 PHE 142 SEE REMARK 999 SEQADV 1N0S MET A 135 UNP P09464 LYS 150 SEE REMARK 999 SEQADV 1N0S SER A 175 UNP P09464 SEE REMARK 999 SEQADV 1N0S ASN A 176 UNP P09464 SEE REMARK 999 SEQADV 1N0S TRP A 177 UNP P09464 SEE REMARK 999 SEQADV 1N0S SER A 178 UNP P09464 SEE REMARK 999 SEQADV 1N0S HIS A 179 UNP P09464 SEE REMARK 999 SEQADV 1N0S PRO A 180 UNP P09464 SEE REMARK 999 SEQADV 1N0S GLN A 181 UNP P09464 SEE REMARK 999 SEQADV 1N0S PHE A 182 UNP P09464 SEE REMARK 999 SEQADV 1N0S GLU A 183 UNP P09464 SEE REMARK 999 SEQADV 1N0S LYS A 184 UNP P09464 SEE REMARK 999 SEQADV 1N0S ASP B 1 UNP P09464 ASN 16 SEE REMARK 999 SEQADV 1N0S GLN B 21 UNP P09464 ASN 36 SEE REMARK 999 SEQADV 1N0S SER B 34 UNP P09464 ASN 49 SEE REMARK 999 SEQADV 1N0S PRO B 35 UNP P09464 SER 50 SEE REMARK 999 SEQADV 1N0S ASN B 36 UNP P09464 VAL 51 SEE REMARK 999 SEQADV 1N0S GLY B 37 UNP P09464 GLU 52 SEE REMARK 999 SEQADV 1N0S ARG B 58 UNP P09464 ASN 73 SEE REMARK 999 SEQADV 1N0S ASP B 60 UNP P09464 HIS 75 SEE REMARK 999 SEQADV 1N0S MET B 69 UNP P09464 ILE 84 SEE REMARK 999 SEQADV 1N0S SER B 87 UNP P09464 LYS 102 SEE REMARK 999 SEQADV 1N0S ARG B 88 UNP P09464 LEU 103 SEE REMARK 999 SEQADV 1N0S VAL B 90 UNP P09464 TYR 105 SEE REMARK 999 SEQADV 1N0S TYR B 93 UNP P09464 VAL 108 SEE REMARK 999 SEQADV 1N0S ARG B 95 UNP P09464 LYS 110 SEE REMARK 999 SEQADV 1N0S LYS B 96 UNP P09464 GLU 111 SEE REMARK 999 SEQADV 1N0S THR B 97 UNP P09464 ASN 112 SEE REMARK 999 SEQADV 1N0S SER B 114 UNP P09464 TYR 129 SEE REMARK 999 SEQADV 1N0S ARG B 116 UNP P09464 LYS 131 SEE REMARK 999 SEQADV 1N0S TRP B 125 UNP P09464 GLN 140 SEE REMARK 999 SEQADV 1N0S HIS B 127 UNP P09464 PHE 142 SEE REMARK 999 SEQADV 1N0S MET B 135 UNP P09464 LYS 150 SEE REMARK 999 SEQADV 1N0S SER B 175 UNP P09464 SEE REMARK 999 SEQADV 1N0S ASN B 176 UNP P09464 SEE REMARK 999 SEQADV 1N0S TRP B 177 UNP P09464 SEE REMARK 999 SEQADV 1N0S SER B 178 UNP P09464 SEE REMARK 999 SEQADV 1N0S HIS B 179 UNP P09464 SEE REMARK 999 SEQADV 1N0S PRO B 180 UNP P09464 SEE REMARK 999 SEQADV 1N0S GLN B 181 UNP P09464 SEE REMARK 999 SEQADV 1N0S PHE B 182 UNP P09464 SEE REMARK 999 SEQADV 1N0S GLU B 183 UNP P09464 SEE REMARK 999 SEQADV 1N0S LYS B 184 UNP P09464 SEE REMARK 999 SEQRES 1 A 184 ASP VAL TYR HIS ASP GLY ALA CYS PRO GLU VAL LYS PRO SEQRES 2 A 184 VAL ASP ASN PHE ASP TRP SER GLN TYR HIS GLY LYS TRP SEQRES 3 A 184 TRP GLU VAL ALA LYS TYR PRO SER PRO ASN GLY LYS TYR SEQRES 4 A 184 GLY LYS CYS GLY TRP ALA GLU TYR THR PRO GLU GLY LYS SEQRES 5 A 184 SER VAL LYS VAL SER ARG TYR ASP VAL ILE HIS GLY LYS SEQRES 6 A 184 GLU TYR PHE MET GLU GLY THR ALA TYR PRO VAL GLY ASP SEQRES 7 A 184 SER LYS ILE GLY LYS ILE TYR HIS SER ARG THR VAL GLY SEQRES 8 A 184 GLY TYR THR ARG LYS THR VAL PHE ASN VAL LEU SER THR SEQRES 9 A 184 ASP ASN LYS ASN TYR ILE ILE GLY TYR SER CYS ARG TYR SEQRES 10 A 184 ASP GLU ASP LYS LYS GLY HIS TRP ASP HIS VAL TRP VAL SEQRES 11 A 184 LEU SER ARG SER MET VAL LEU THR GLY GLU ALA LYS THR SEQRES 12 A 184 ALA VAL GLU ASN TYR LEU ILE GLY SER PRO VAL VAL ASP SEQRES 13 A 184 SER GLN LYS LEU VAL TYR SER ASP PHE SER GLU ALA ALA SEQRES 14 A 184 CYS LYS VAL ASN ASN SER ASN TRP SER HIS PRO GLN PHE SEQRES 15 A 184 GLU LYS SEQRES 1 B 184 ASP VAL TYR HIS ASP GLY ALA CYS PRO GLU VAL LYS PRO SEQRES 2 B 184 VAL ASP ASN PHE ASP TRP SER GLN TYR HIS GLY LYS TRP SEQRES 3 B 184 TRP GLU VAL ALA LYS TYR PRO SER PRO ASN GLY LYS TYR SEQRES 4 B 184 GLY LYS CYS GLY TRP ALA GLU TYR THR PRO GLU GLY LYS SEQRES 5 B 184 SER VAL LYS VAL SER ARG TYR ASP VAL ILE HIS GLY LYS SEQRES 6 B 184 GLU TYR PHE MET GLU GLY THR ALA TYR PRO VAL GLY ASP SEQRES 7 B 184 SER LYS ILE GLY LYS ILE TYR HIS SER ARG THR VAL GLY SEQRES 8 B 184 GLY TYR THR ARG LYS THR VAL PHE ASN VAL LEU SER THR SEQRES 9 B 184 ASP ASN LYS ASN TYR ILE ILE GLY TYR SER CYS ARG TYR SEQRES 10 B 184 ASP GLU ASP LYS LYS GLY HIS TRP ASP HIS VAL TRP VAL SEQRES 11 B 184 LEU SER ARG SER MET VAL LEU THR GLY GLU ALA LYS THR SEQRES 12 B 184 ALA VAL GLU ASN TYR LEU ILE GLY SER PRO VAL VAL ASP SEQRES 13 B 184 SER GLN LYS LEU VAL TYR SER ASP PHE SER GLU ALA ALA SEQRES 14 B 184 CYS LYS VAL ASN ASN SER ASN TRP SER HIS PRO GLN PHE SEQRES 15 B 184 GLU LYS HET FLU A 500 25 HET SO4 B 185 5 HET FLU B 501 25 HETNAM FLU 2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID HETNAM SO4 SULFATE ION HETSYN FLU FLUORESCEIN FORMUL 3 FLU 2(C20 H12 O5) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *98(H2 O) HELIX 1 1 ASP A 18 TYR A 22 5 5 HELIX 2 2 SER A 34 LYS A 38 5 5 HELIX 3 3 THR A 138 SER A 152 1 15 HELIX 4 4 ASP A 156 LEU A 160 5 5 HELIX 5 5 SER A 166 LYS A 171 1 6 HELIX 6 6 ASP B 18 TYR B 22 5 5 HELIX 7 7 SER B 34 LYS B 38 5 5 HELIX 8 8 THR B 138 SER B 152 1 15 HELIX 9 9 ASP B 156 LEU B 160 5 5 HELIX 10 10 SER B 166 LYS B 171 1 6 SHEET 1 A26 VAL A 2 ASP A 5 0 SHEET 2 A26 GLY A 123 SER A 132 -1 N HIS A 124 O HIS A 4 SHEET 3 A26 GLY A 24 LYS A 31 -1 N TRP A 27 O SER A 132 SHEET 4 A26 VAL A 161 TYR A 162 -1 N VAL A 161 O LYS A 31 SHEET 5 A26 GLY A 24 LYS A 31 -1 O LYS A 31 N VAL A 161 SHEET 6 A26 GLY A 43 GLU A 50 -1 O GLY A 43 N GLU A 28 SHEET 7 A26 SER A 53 ILE A 62 -1 O SER A 53 N GLU A 50 SHEET 8 A26 LYS A 65 PRO A 75 -1 O LYS A 65 N ILE A 62 SHEET 9 A26 LYS A 83 VAL A 90 -1 N TYR A 85 O TYR A 74 SHEET 10 A26 TYR A 93 THR A 104 -1 O TYR A 93 N VAL A 90 SHEET 11 A26 TYR B 93 THR B 104 -1 N THR B 94 O LYS A 96 SHEET 12 A26 TYR B 109 TYR B 117 -1 N ILE B 111 O SER B 103 SHEET 13 A26 GLY B 123 SER B 132 -1 N TRP B 125 O ARG B 116 SHEET 14 A26 VAL B 2 ASP B 5 -1 O VAL B 2 N ASP B 126 SHEET 15 A26 GLY B 123 SER B 132 -1 O HIS B 124 N HIS B 4 SHEET 16 A26 GLY B 24 LYS B 31 -1 N TRP B 27 O SER B 132 SHEET 17 A26 VAL B 161 TYR B 162 -1 N VAL B 161 O LYS B 31 SHEET 18 A26 GLY B 24 LYS B 31 -1 O LYS B 31 N VAL B 161 SHEET 19 A26 GLY B 43 GLU B 50 -1 O GLY B 43 N GLU B 28 SHEET 20 A26 SER B 53 ILE B 62 -1 O SER B 53 N GLU B 50 SHEET 21 A26 LYS B 65 PRO B 75 -1 O LYS B 65 N ILE B 62 SHEET 22 A26 LYS B 83 VAL B 90 -1 N TYR B 85 O TYR B 74 SHEET 23 A26 TYR B 93 THR B 104 -1 O TYR B 93 N VAL B 90 SHEET 24 A26 TYR A 93 THR A 104 -1 N THR A 94 O LYS B 96 SHEET 25 A26 TYR A 109 ASP A 118 -1 N ILE A 111 O SER A 103 SHEET 26 A26 GLY A 123 SER A 132 -1 O GLY A 123 N ASP A 118 SSBOND 1 CYS A 8 CYS A 115 1555 1555 2.01 SSBOND 2 CYS A 42 CYS A 170 1555 1555 2.02 SSBOND 3 CYS B 8 CYS B 115 1555 1555 2.00 SSBOND 4 CYS B 42 CYS B 170 1555 1555 2.06 CISPEP 1 TYR A 39 GLY A 40 0 -1.06 CISPEP 2 TYR B 39 GLY B 40 0 -5.27 SITE 1 AC1 5 TYR A 93 ARG A 95 TYR B 93 ARG B 95 SITE 2 AC1 5 HOH B 502 SITE 1 AC2 12 TYR A 22 GLU A 28 TYR A 47 ARG A 58 SITE 2 AC2 12 MET A 69 HIS A 86 PHE A 99 HIS A 127 SITE 3 AC2 12 TRP A 129 HOH A 505 HOH A 511 HOH A 518 SITE 1 AC3 12 TYR B 22 GLU B 28 TYR B 47 ARG B 58 SITE 2 AC3 12 MET B 69 HIS B 86 PHE B 99 HIS B 127 SITE 3 AC3 12 TRP B 129 HOH B 510 HOH B 514 HOH B 533 CRYST1 42.797 85.039 66.059 90.00 106.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023366 0.000000 0.006782 0.00000 SCALE2 0.000000 0.011759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015763 0.00000