data_1N1O
#
_entry.id 1N1O
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1N1O pdb_00001n1o 10.2210/pdb1n1o/pdb
NDB BD0060 ? ?
RCSB RCSB017407 ? ?
WWPDB D_1000017407 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2002-11-15
2 'Structure model' 1 1 2008-04-28
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-11
5 'Structure model' 1 4 2019-07-24
6 'Structure model' 1 5 2024-02-14
7 'Structure model' 1 6 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Derived calculations'
6 5 'Structure model' 'Refinement description'
7 6 'Structure model' 'Data collection'
8 6 'Structure model' 'Database references'
9 6 'Structure model' 'Derived calculations'
10 7 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' software
3 5 'Structure model' struct_conn
4 6 'Structure model' chem_comp_atom
5 6 'Structure model' chem_comp_bond
6 6 'Structure model' database_2
7 6 'Structure model' pdbx_struct_conn_angle
8 6 'Structure model' struct_conn
9 6 'Structure model' struct_site
10 7 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_software.classification'
2 5 'Structure model' '_software.name'
3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
4 6 'Structure model' '_database_2.pdbx_DOI'
5 6 'Structure model' '_database_2.pdbx_database_accession'
6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
12 6 'Structure model' '_pdbx_struct_conn_angle.value'
13 6 'Structure model' '_struct_conn.pdbx_dist_value'
14 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
15 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
16 6 'Structure model' '_struct_conn.ptnr1_label_asym_id'
17 6 'Structure model' '_struct_conn.ptnr1_label_atom_id'
18 6 'Structure model' '_struct_conn.ptnr1_label_comp_id'
19 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
20 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
21 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
22 6 'Structure model' '_struct_conn.ptnr2_label_asym_id'
23 6 'Structure model' '_struct_conn.ptnr2_label_atom_id'
24 6 'Structure model' '_struct_conn.ptnr2_label_comp_id'
25 6 'Structure model' '_struct_site.pdbx_auth_asym_id'
26 6 'Structure model' '_struct_site.pdbx_auth_comp_id'
27 6 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1N1O
_pdbx_database_status.recvd_initial_deposition_date 2002-10-18
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wilds, C.J.' 1
'Wawrzak, Z.' 2
'Krishnamurthy, R.' 3
'Eschenmoser, A.' 4
'Egli, M.' 5
#
_citation.id primary
_citation.title
;Crystal Structure of a B-Form DNA Duplex Containing (L)-alpha-Threofuranosyl (3'-->2') Nucleosides: A
Four-Carbon Sugar Is Easily Accommodated into the Backbone of DNA
;
_citation.journal_abbrev J.Am.Chem.Soc.
_citation.journal_volume 124
_citation.page_first 13716
_citation.page_last 13721
_citation.year 2002
_citation.journal_id_ASTM JACSAT
_citation.country US
_citation.journal_id_ISSN 0002-7863
_citation.journal_id_CSD 0004
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 12431101
_citation.pdbx_database_id_DOI 10.1021/ja0207807
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wilds, C.J.' 1 ?
primary 'Wawrzak, Z.' 2 ?
primary 'Krishnamurthy, R.' 3 ?
primary 'Eschenmoser, A.' 4 ?
primary 'Egli, M.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-3'" 3649.366 2 ? ? ? 'Dickerson-Drew dodecamer duplex'
2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
3 water nat water 18.015 197 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(TFT)(DT)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DA n
1 6 DA n
1 7 TFT n
1 8 DT n
1 9 DC n
1 10 DG n
1 11 DC n
1 12 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'solid phase oligonucleotide synthesis was used.'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
TFT 'DNA linking' n "(L)-ALPHA-THREOFURANOSYL-THYMINE-3'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC CYT A . n
A 1 2 DG 2 2 2 DG GUA A . n
A 1 3 DC 3 3 3 DC CYT A . n
A 1 4 DG 4 4 4 DG GUA A . n
A 1 5 DA 5 5 5 DA ADE A . n
A 1 6 DA 6 6 6 DA ADE A . n
A 1 7 TFT 7 7 7 TFT THT A . n
A 1 8 DT 8 8 8 DT THY A . n
A 1 9 DC 9 9 9 DC CYT A . n
A 1 10 DG 10 10 10 DG GUA A . n
A 1 11 DC 11 11 11 DC CYT A . n
A 1 12 DG 12 12 12 DG GUA A . n
B 1 1 DC 1 113 113 DC CYT B . n
B 1 2 DG 2 114 114 DG GUA B . n
B 1 3 DC 3 115 115 DC CYT B . n
B 1 4 DG 4 116 116 DG GUA B . n
B 1 5 DA 5 117 117 DA ADE B . n
B 1 6 DA 6 118 118 DA ADE B . n
B 1 7 TFT 7 119 119 TFT THT B . n
B 1 8 DT 8 120 120 DT THY B . n
B 1 9 DC 9 121 121 DC CYT B . n
B 1 10 DG 10 122 122 DG GUA B . n
B 1 11 DC 11 123 123 DC CYT B . n
B 1 12 DG 12 124 124 DG GUA B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG 1 901 901 MG MG A .
D 3 HOH 1 701 701 HOH TIP A .
D 3 HOH 2 702 702 HOH TIP A .
D 3 HOH 3 703 703 HOH TIP A .
D 3 HOH 4 705 705 HOH TIP A .
D 3 HOH 5 707 707 HOH TIP A .
D 3 HOH 6 709 709 HOH TIP A .
D 3 HOH 7 710 710 HOH TIP A .
D 3 HOH 8 711 711 HOH TIP A .
D 3 HOH 9 716 716 HOH TIP A .
D 3 HOH 10 718 718 HOH TIP A .
D 3 HOH 11 719 719 HOH TIP A .
D 3 HOH 12 721 721 HOH TIP A .
D 3 HOH 13 723 723 HOH TIP A .
D 3 HOH 14 724 724 HOH TIP A .
D 3 HOH 15 725 725 HOH TIP A .
D 3 HOH 16 726 726 HOH TIP A .
D 3 HOH 17 728 728 HOH TIP A .
D 3 HOH 18 731 731 HOH TIP A .
D 3 HOH 19 734 734 HOH TIP A .
D 3 HOH 20 737 737 HOH TIP A .
D 3 HOH 21 740 740 HOH TIP A .
D 3 HOH 22 743 743 HOH TIP A .
D 3 HOH 23 744 744 HOH TIP A .
D 3 HOH 24 745 745 HOH TIP A .
D 3 HOH 25 747 747 HOH TIP A .
D 3 HOH 26 750 750 HOH TIP A .
D 3 HOH 27 751 751 HOH TIP A .
D 3 HOH 28 754 754 HOH TIP A .
D 3 HOH 29 757 757 HOH TIP A .
D 3 HOH 30 764 764 HOH TIP A .
D 3 HOH 31 766 766 HOH TIP A .
D 3 HOH 32 773 773 HOH TIP A .
D 3 HOH 33 775 775 HOH TIP A .
D 3 HOH 34 778 778 HOH TIP A .
D 3 HOH 35 780 780 HOH TIP A .
D 3 HOH 36 783 783 HOH TIP A .
D 3 HOH 37 788 788 HOH TIP A .
D 3 HOH 38 789 789 HOH TIP A .
D 3 HOH 39 790 790 HOH TIP A .
D 3 HOH 40 791 791 HOH TIP A .
D 3 HOH 41 796 796 HOH TIP A .
D 3 HOH 42 800 800 HOH TIP A .
D 3 HOH 43 801 801 HOH TIP A .
D 3 HOH 44 802 802 HOH TIP A .
D 3 HOH 45 805 805 HOH TIP A .
D 3 HOH 46 808 808 HOH TIP A .
D 3 HOH 47 809 809 HOH TIP A .
D 3 HOH 48 814 814 HOH TIP A .
D 3 HOH 49 815 815 HOH TIP A .
D 3 HOH 50 817 817 HOH TIP A .
D 3 HOH 51 820 820 HOH TIP A .
D 3 HOH 52 821 821 HOH TIP A .
D 3 HOH 53 824 824 HOH TIP A .
D 3 HOH 54 830 830 HOH TIP A .
D 3 HOH 55 831 831 HOH TIP A .
D 3 HOH 56 833 833 HOH TIP A .
D 3 HOH 57 834 834 HOH TIP A .
D 3 HOH 58 838 838 HOH TIP A .
D 3 HOH 59 839 839 HOH TIP A .
D 3 HOH 60 840 840 HOH TIP A .
D 3 HOH 61 841 841 HOH TIP A .
D 3 HOH 62 849 849 HOH TIP A .
D 3 HOH 63 851 851 HOH TIP A .
D 3 HOH 64 852 852 HOH TIP A .
D 3 HOH 65 860 860 HOH TIP A .
D 3 HOH 66 861 861 HOH TIP A .
D 3 HOH 67 863 863 HOH TIP A .
D 3 HOH 68 866 866 HOH TIP A .
D 3 HOH 69 867 867 HOH TIP A .
D 3 HOH 70 869 869 HOH TIP A .
D 3 HOH 71 871 871 HOH TIP A .
D 3 HOH 72 872 872 HOH TIP A .
D 3 HOH 73 873 873 HOH TIP A .
D 3 HOH 74 875 875 HOH TIP A .
D 3 HOH 75 876 876 HOH TIP A .
D 3 HOH 76 878 878 HOH TIP A .
D 3 HOH 77 879 879 HOH TIP A .
D 3 HOH 78 882 882 HOH TIP A .
D 3 HOH 79 887 887 HOH TIP A .
D 3 HOH 80 888 888 HOH TIP A .
D 3 HOH 81 890 890 HOH TIP A .
D 3 HOH 82 892 892 HOH TIP A .
D 3 HOH 83 893 893 HOH TIP A .
D 3 HOH 84 898 898 HOH TIP A .
D 3 HOH 85 900 900 HOH TIP A .
D 3 HOH 86 902 902 HOH TIP A .
D 3 HOH 87 903 903 HOH TIP A .
D 3 HOH 88 905 905 HOH TIP A .
D 3 HOH 89 906 906 HOH TIP A .
D 3 HOH 90 911 911 HOH TIP A .
D 3 HOH 91 912 912 HOH TIP A .
D 3 HOH 92 913 913 HOH TIP A .
D 3 HOH 93 914 914 HOH TIP A .
D 3 HOH 94 917 917 HOH TIP A .
D 3 HOH 95 918 918 HOH TIP A .
D 3 HOH 96 920 920 HOH TIP A .
D 3 HOH 97 924 924 HOH TIP A .
D 3 HOH 98 925 925 HOH TIP A .
D 3 HOH 99 927 927 HOH TIP A .
D 3 HOH 100 931 931 HOH TIP A .
D 3 HOH 101 936 936 HOH TIP A .
D 3 HOH 102 937 937 HOH TIP A .
D 3 HOH 103 939 939 HOH TIP A .
D 3 HOH 104 943 943 HOH TIP A .
D 3 HOH 105 949 949 HOH TIP A .
D 3 HOH 106 950 950 HOH TIP A .
E 3 HOH 1 706 706 HOH TIP B .
E 3 HOH 2 708 708 HOH TIP B .
E 3 HOH 3 712 712 HOH TIP B .
E 3 HOH 4 713 713 HOH TIP B .
E 3 HOH 5 714 714 HOH TIP B .
E 3 HOH 6 715 715 HOH TIP B .
E 3 HOH 7 717 717 HOH TIP B .
E 3 HOH 8 720 720 HOH TIP B .
E 3 HOH 9 727 727 HOH TIP B .
E 3 HOH 10 729 729 HOH TIP B .
E 3 HOH 11 730 730 HOH TIP B .
E 3 HOH 12 733 733 HOH TIP B .
E 3 HOH 13 735 735 HOH TIP B .
E 3 HOH 14 738 738 HOH TIP B .
E 3 HOH 15 741 741 HOH TIP B .
E 3 HOH 16 742 742 HOH TIP B .
E 3 HOH 17 746 746 HOH TIP B .
E 3 HOH 18 748 748 HOH TIP B .
E 3 HOH 19 749 749 HOH TIP B .
E 3 HOH 20 753 753 HOH TIP B .
E 3 HOH 21 755 755 HOH TIP B .
E 3 HOH 22 758 758 HOH TIP B .
E 3 HOH 23 759 759 HOH TIP B .
E 3 HOH 24 760 760 HOH TIP B .
E 3 HOH 25 761 761 HOH TIP B .
E 3 HOH 26 763 763 HOH TIP B .
E 3 HOH 27 765 765 HOH TIP B .
E 3 HOH 28 769 769 HOH TIP B .
E 3 HOH 29 772 772 HOH TIP B .
E 3 HOH 30 774 774 HOH TIP B .
E 3 HOH 31 776 776 HOH TIP B .
E 3 HOH 32 777 777 HOH TIP B .
E 3 HOH 33 782 782 HOH TIP B .
E 3 HOH 34 784 784 HOH TIP B .
E 3 HOH 35 787 787 HOH TIP B .
E 3 HOH 36 792 792 HOH TIP B .
E 3 HOH 37 797 797 HOH TIP B .
E 3 HOH 38 798 798 HOH TIP B .
E 3 HOH 39 799 799 HOH TIP B .
E 3 HOH 40 803 803 HOH TIP B .
E 3 HOH 41 804 804 HOH TIP B .
E 3 HOH 42 806 806 HOH TIP B .
E 3 HOH 43 807 807 HOH TIP B .
E 3 HOH 44 810 810 HOH TIP B .
E 3 HOH 45 811 811 HOH TIP B .
E 3 HOH 46 812 812 HOH TIP B .
E 3 HOH 47 813 813 HOH TIP B .
E 3 HOH 48 819 819 HOH TIP B .
E 3 HOH 49 822 822 HOH TIP B .
E 3 HOH 50 823 823 HOH TIP B .
E 3 HOH 51 832 832 HOH TIP B .
E 3 HOH 52 835 835 HOH TIP B .
E 3 HOH 53 837 837 HOH TIP B .
E 3 HOH 54 843 843 HOH TIP B .
E 3 HOH 55 846 846 HOH TIP B .
E 3 HOH 56 847 847 HOH TIP B .
E 3 HOH 57 848 848 HOH TIP B .
E 3 HOH 58 850 850 HOH TIP B .
E 3 HOH 59 854 854 HOH TIP B .
E 3 HOH 60 855 855 HOH TIP B .
E 3 HOH 61 858 858 HOH TIP B .
E 3 HOH 62 859 859 HOH TIP B .
E 3 HOH 63 862 862 HOH TIP B .
E 3 HOH 64 865 865 HOH TIP B .
E 3 HOH 65 868 868 HOH TIP B .
E 3 HOH 66 870 870 HOH TIP B .
E 3 HOH 67 874 874 HOH TIP B .
E 3 HOH 68 877 877 HOH TIP B .
E 3 HOH 69 880 880 HOH TIP B .
E 3 HOH 70 884 884 HOH TIP B .
E 3 HOH 71 885 885 HOH TIP B .
E 3 HOH 72 889 889 HOH TIP B .
E 3 HOH 73 891 891 HOH TIP B .
E 3 HOH 74 895 895 HOH TIP B .
E 3 HOH 75 899 899 HOH TIP B .
E 3 HOH 76 907 907 HOH TIP B .
E 3 HOH 77 908 908 HOH TIP B .
E 3 HOH 78 909 909 HOH TIP B .
E 3 HOH 79 910 910 HOH TIP B .
E 3 HOH 80 916 916 HOH TIP B .
E 3 HOH 81 919 919 HOH TIP B .
E 3 HOH 82 921 921 HOH TIP B .
E 3 HOH 83 922 922 HOH TIP B .
E 3 HOH 84 928 928 HOH TIP B .
E 3 HOH 85 933 933 HOH TIP B .
E 3 HOH 86 935 935 HOH TIP B .
E 3 HOH 87 938 938 HOH TIP B .
E 3 HOH 88 941 941 HOH TIP B .
E 3 HOH 89 942 942 HOH TIP B .
E 3 HOH 90 945 945 HOH TIP B .
E 3 HOH 91 952 952 HOH TIP B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SHELXL-97 refinement . ? 1
SCALEPACK 'data scaling' . ? 2
CNS refinement . ? 3
MAR345 'data collection' . ? 4
CNS phasing . ? 5
#
_cell.entry_id 1N1O
_cell.length_a 25.277
_cell.length_b 40.080
_cell.length_c 65.860
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1N1O
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 19
_symmetry.cell_setting ?
#
_exptl.entry_id 1N1O
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.75
_exptl_crystal.density_percent_sol 29.04
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7
_exptl_crystal_grow.pdbx_details
;oligonucleotide, sodium cacodylate, magnesium acetate, spermine tetrahydrochloride, 2-methyl-2,4-pentanediol (MPD), pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 oligonucleotide ? ? ?
1 2 1 'sodium cacodylate' ? ? ?
1 3 1 'magnesium acetate' ? ? ?
1 4 1 'spermine tetrahydrochloride' ? ? ?
1 5 1 MPD ? ? ?
1 6 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 120
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 2001-02-20
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.978
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 5ID-B'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 5ID-B
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.978
#
_reflns.entry_id 1N1O
_reflns.observed_criterion_sigma_F 2
_reflns.observed_criterion_sigma_I 1
_reflns.d_resolution_high 1.20
_reflns.d_resolution_low 20.0
_reflns.number_all 21360
_reflns.number_obs 21311
_reflns.percent_possible_obs 99.2
_reflns.pdbx_Rmerge_I_obs 0.037
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.20
_reflns_shell.d_res_low 1.24
_reflns_shell.percent_possible_all 98.2
_reflns_shell.Rmerge_I_obs 0.327
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1N1O
_refine.ls_d_res_high 1.20
_refine.ls_d_res_low 20
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all 21311
_refine.ls_number_reflns_obs 21311
_refine.ls_number_reflns_R_free ?
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_R_work 0.16
_refine.ls_R_factor_R_free ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'B-form DNA (native Dickerson-Drew dodecamer)'
_refine.pdbx_ls_cross_valid_method ?
_refine.pdbx_R_Free_selection_details random
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_stereochemistry_target_values ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.details ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 484
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 197
_refine_hist.number_atoms_total 682
_refine_hist.d_res_high 1.20
_refine_hist.d_res_low 20
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.entry_id 1N1O
_pdbx_refine.R_factor_all_no_cutoff 0.16
_pdbx_refine.R_factor_obs_no_cutoff 0.16
_pdbx_refine.number_reflns_obs_no_cutoff 21311
_pdbx_refine.free_R_factor_no_cutoff 0.2
_pdbx_refine.free_R_val_test_set_ct_no_cutoff 2130
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0
_pdbx_refine.R_factor_all_4sig_cutoff 0.156
_pdbx_refine.R_factor_obs_4sig_cutoff 0.156
_pdbx_refine.number_reflns_obs_4sig_cutoff 18649
_pdbx_refine.free_R_factor_4sig_cutoff 0.198
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1866
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.free_R_error_no_cutoff ?
#
_database_PDB_matrix.entry_id 1N1O
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1N1O
_struct.title
;Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNA
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1N1O
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text
'B-DNA, hydrogen bonding, nucleic acid etiology, tetrose, four-carbon sugar, nucleic acid analogue, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1N1O
_struct_ref.pdbx_db_accession 1N1O
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1N1O A 1 ? 12 ? 1N1O 1 ? 12 ? 1 12
2 1 1N1O B 1 ? 12 ? 1N1O 113 ? 124 ? 113 124
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A TFT 7 P ? ? A DA 6 A TFT 7 1_555 ? ? ? ? ? ? ? 1.610 ? ?
covale2 covale one ? A TFT 7 O2T ? ? ? 1_555 A DT 8 P ? ? A TFT 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.611 ? ?
covale3 covale both ? B DA 6 "O3'" ? ? ? 1_555 B TFT 7 P ? ? B DA 118 B TFT 119 1_555 ? ? ? ? ? ? ? 1.583 ? ?
covale4 covale one ? B TFT 7 O2T ? ? ? 1_555 B DT 8 P ? ? B TFT 119 B DT 120 1_555 ? ? ? ? ? ? ? 1.548 ? ?
metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 702 A MG 901 1_555 ? ? ? ? ? ? ? 2.068 ? ?
metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 705 A MG 901 1_555 ? ? ? ? ? ? ? 2.050 ? ?
metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 706 1_555 ? ? ? ? ? ? ? 2.119 ? ?
metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 708 1_555 ? ? ? ? ? ? ? 2.056 ? ?
metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 715 1_555 ? ? ? ? ? ? ? 2.066 ? ?
metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 901 B HOH 720 1_555 ? ? ? ? ? ? ? 2.031 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B TFT 7 N3 ? ? A DA 6 B TFT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B TFT 7 O4 ? ? A DA 6 B TFT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A TFT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A TFT 7 B DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A TFT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A TFT 7 B DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? D HOH . ? A HOH 705 ? 1_555 92.4 ?
2 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 706 ? 1_555 174.8 ?
3 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 706 ? 1_555 88.6 ?
4 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 708 ? 1_555 94.0 ?
5 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 708 ? 1_555 86.2 ?
6 O ? E HOH . ? B HOH 706 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 708 ? 1_555 91.1 ?
7 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 89.9 ?
8 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 91.5 ?
9 O ? E HOH . ? B HOH 706 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 85.1 ?
10 O ? E HOH . ? B HOH 708 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 715 ? 1_555 175.5 ?
11 O ? D HOH . ? A HOH 702 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 88.6 ?
12 O ? D HOH . ? A HOH 705 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 174.9 ?
13 O ? E HOH . ? B HOH 706 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 90.8 ?
14 O ? E HOH . ? B HOH 708 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 88.8 ?
15 O ? E HOH . ? B HOH 715 ? 1_555 MG ? C MG . ? A MG 901 ? 1_555 O ? E HOH . ? B HOH 720 ? 1_555 93.5 ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id MG
_struct_site.pdbx_auth_seq_id 901
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 6
_struct_site.details 'BINDING SITE FOR RESIDUE MG A 901'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 HOH D . ? HOH A 702 . ? 1_555 ?
2 AC1 6 HOH D . ? HOH A 705 . ? 1_555 ?
3 AC1 6 HOH E . ? HOH B 706 . ? 1_555 ?
4 AC1 6 HOH E . ? HOH B 708 . ? 1_555 ?
5 AC1 6 HOH E . ? HOH B 715 . ? 1_555 ?
6 AC1 6 HOH E . ? HOH B 720 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.496 1.420 0.076 0.011 N
2 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.455 1.518 -0.063 0.010 N
3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.529 1.420 0.109 0.011 N
4 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.518 1.420 0.098 0.011 N
5 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.497 1.420 0.077 0.011 N
6 1 "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 1.430 1.518 -0.088 0.010 N
7 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? 1.569 1.420 0.149 0.011 N
8 1 "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.449 1.518 -0.069 0.010 N
9 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.546 1.420 0.126 0.011 N
10 1 "C2'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.445 1.518 -0.073 0.010 N
11 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.512 1.420 0.092 0.011 N
12 1 "O4'" B DC 113 ? ? "C1'" B DC 113 ? ? 1.499 1.420 0.079 0.011 N
13 1 "O4'" B DC 115 ? ? "C1'" B DC 115 ? ? 1.524 1.420 0.104 0.011 N
14 1 "C2'" B DA 117 ? ? "C1'" B DA 117 ? ? 1.458 1.518 -0.060 0.010 N
15 1 "O4'" B DA 117 ? ? "C1'" B DA 117 ? ? 1.543 1.420 0.123 0.011 N
16 1 "O4'" B DA 118 ? ? "C1'" B DA 118 ? ? 1.499 1.420 0.079 0.011 N
17 1 "C2'" B DT 120 ? ? "C1'" B DT 120 ? ? 1.452 1.518 -0.066 0.010 N
18 1 "O4'" B DT 120 ? ? "C1'" B DT 120 ? ? 1.519 1.420 0.099 0.011 N
19 1 "C2'" B DC 121 ? ? "C1'" B DC 121 ? ? 1.439 1.518 -0.079 0.010 N
20 1 "O4'" B DC 121 ? ? "C1'" B DC 121 ? ? 1.549 1.420 0.129 0.011 N
21 1 "C2'" B DC 123 ? ? "C1'" B DC 123 ? ? 1.415 1.518 -0.103 0.010 N
22 1 "O4'" B DC 123 ? ? "C1'" B DC 123 ? ? 1.557 1.420 0.137 0.011 N
23 1 "C2'" B DG 124 ? ? "C1'" B DG 124 ? ? 1.424 1.518 -0.094 0.010 N
24 1 "O4'" B DG 124 ? ? "C1'" B DG 124 ? ? 1.552 1.420 0.132 0.011 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 110.01 106.00 4.01 0.60 N
2 1 N1 A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 123.26 114.30 8.96 1.40 N
3 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 128.75 119.60 9.15 1.50 N
4 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 102.45 108.00 -5.55 0.70 N
5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.12 108.30 1.82 0.30 N
6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 103.74 108.00 -4.26 0.70 N
7 1 N1 A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 126.23 114.30 11.93 1.40 N
8 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 97.15 108.00 -10.85 0.70 N
9 1 N1 A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 125.18 114.30 10.88 1.40 N
10 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 98.92 108.00 -9.08 0.70 N
11 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 99.93 108.00 -8.07 0.70 N
12 1 "O4'" B DC 113 ? ? "C1'" B DC 113 ? ? N1 B DC 113 ? ? 103.54 108.00 -4.46 0.70 N
13 1 "O4'" B DG 114 ? ? "C1'" B DG 114 ? ? N9 B DG 114 ? ? 103.79 108.00 -4.21 0.70 N
14 1 "O4'" B DC 115 ? ? "C1'" B DC 115 ? ? N1 B DC 115 ? ? 100.73 108.00 -7.27 0.70 N
15 1 "O4'" B DG 116 ? ? "C1'" B DG 116 ? ? N9 B DG 116 ? ? 113.03 108.30 4.73 0.30 N
16 1 "C3'" B DG 116 ? ? "O3'" B DG 116 ? ? P B DA 117 ? ? 128.93 119.70 9.23 1.20 Y
17 1 "O4'" B DA 117 ? ? "C1'" B DA 117 ? ? N9 B DA 117 ? ? 100.77 108.00 -7.23 0.70 N
18 1 "C3'" B DA 118 ? ? "O3'" B DA 118 ? ? P B TFT 119 ? ? 128.15 119.70 8.45 1.20 Y
19 1 "O5'" B DT 120 ? ? "C5'" B DT 120 ? ? "C4'" B DT 120 ? ? 102.56 109.40 -6.84 0.80 N
20 1 "O4'" B DT 120 ? ? "C1'" B DT 120 ? ? N1 B DT 120 ? ? 100.25 108.00 -7.75 0.70 N
21 1 "C1'" B DC 121 ? ? "O4'" B DC 121 ? ? "C4'" B DC 121 ? ? 101.45 110.10 -8.65 1.00 N
22 1 N1 B DC 121 ? ? "C1'" B DC 121 ? ? "C2'" B DC 121 ? ? 123.74 114.30 9.44 1.40 N
23 1 "O4'" B DC 121 ? ? "C1'" B DC 121 ? ? N1 B DC 121 ? ? 99.97 108.00 -8.03 0.70 N
24 1 N1 B DC 123 ? ? "C1'" B DC 123 ? ? "C2'" B DC 123 ? ? 123.59 114.30 9.29 1.40 N
25 1 "O4'" B DC 123 ? ? "C1'" B DC 123 ? ? N1 B DC 123 ? ? 98.87 108.00 -9.13 0.70 N
26 1 N9 B DG 124 ? ? "C1'" B DG 124 ? ? "C2'" B DG 124 ? ? 123.44 114.30 9.14 1.40 N
27 1 "O4'" B DG 124 ? ? "C1'" B DG 124 ? ? N9 B DG 124 ? ? 99.77 108.00 -8.23 0.70 N
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A TFT 7 A TFT 7 ? DT ?
2 B TFT 7 B TFT 119 ? DT ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
MG MG MG N N 147
TFT P P N N 148
TFT OP1 O N N 149
TFT OP2 O N N 150
TFT O3T O N N 151
TFT N1 N N N 152
TFT C6 C N N 153
TFT C2 C N N 154
TFT O2 O N N 155
TFT N3 N N N 156
TFT C4 C N N 157
TFT O4 O N N 158
TFT C5 C N N 159
TFT C5M C N N 160
TFT C2T C N R 161
TFT C4T C N N 162
TFT O4T O N N 163
TFT C1T C N R 164
TFT C3T C N S 165
TFT O2T O N N 166
TFT OP3 O N N 167
TFT HOP2 H N N 168
TFT H6 H N N 169
TFT H3 H N N 170
TFT H71 H N N 171
TFT H72 H N N 172
TFT H73 H N N 173
TFT H2TC H N N 174
TFT H4T1 H N N 175
TFT H4T2 H N N 176
TFT H1TC H N N 177
TFT H3TC H N N 178
TFT H2T H N N 179
TFT HOP3 H N N 180
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
TFT P OP1 doub N N 152
TFT P OP2 sing N N 153
TFT P O3T sing N N 154
TFT P OP3 sing N N 155
TFT OP2 HOP2 sing N N 156
TFT O3T C3T sing N N 157
TFT N1 C6 sing N N 158
TFT N1 C2 sing N N 159
TFT N1 C1T sing N N 160
TFT C6 C5 doub N N 161
TFT C6 H6 sing N N 162
TFT C2 O2 doub N N 163
TFT C2 N3 sing N N 164
TFT N3 C4 sing N N 165
TFT N3 H3 sing N N 166
TFT C4 O4 doub N N 167
TFT C4 C5 sing N N 168
TFT C5 C5M sing N N 169
TFT C5M H71 sing N N 170
TFT C5M H72 sing N N 171
TFT C5M H73 sing N N 172
TFT C2T C1T sing N N 173
TFT C2T C3T sing N N 174
TFT C2T O2T sing N N 175
TFT C2T H2TC sing N N 176
TFT C4T O4T sing N N 177
TFT C4T C3T sing N N 178
TFT C4T H4T1 sing N N 179
TFT C4T H4T2 sing N N 180
TFT O4T C1T sing N N 181
TFT C1T H1TC sing N N 182
TFT C3T H3TC sing N N 183
TFT O2T H2T sing N N 184
TFT OP3 HOP3 sing N N 185
#
_ndb_struct_conf_na.entry_id 1N1O
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 12 1_555 0.218 -0.106 0.115 4.713 -13.772 -0.442 1 A_DC1:DG124_B A 1 ? B 124 ? 19 1
1 A DG 2 1_555 B DC 11 1_555 -0.178 -0.176 0.446 6.936 -11.760 -2.598 2 A_DG2:DC123_B A 2 ? B 123 ? 19 1
1 A DC 3 1_555 B DG 10 1_555 0.147 -0.175 0.176 -4.299 -4.342 -0.681 3 A_DC3:DG122_B A 3 ? B 122 ? 19 1
1 A DG 4 1_555 B DC 9 1_555 -0.224 -0.066 0.039 12.715 -7.773 0.581 4 A_DG4:DC121_B A 4 ? B 121 ? 19 1
1 A DA 5 1_555 B DT 8 1_555 -0.070 -0.102 0.006 10.520 -12.652 4.520 5 A_DA5:DT120_B A 5 ? B 120 ? 20 1
1 A DA 6 1_555 B TFT 7 1_555 0.200 -0.040 0.021 5.108 -15.361 1.042 6 A_DA6:TFT119_B A 6 ? B 119 ? 20 1
1 A TFT 7 1_555 B DA 6 1_555 -0.116 -0.116 0.051 -0.110 -15.226 2.172 7 A_TFT7:DA118_B A 7 ? B 118 ? 20 1
1 A DT 8 1_555 B DA 5 1_555 -0.028 -0.148 -0.088 -1.918 -12.344 3.586 8 A_DT8:DA117_B A 8 ? B 117 ? 20 1
1 A DC 9 1_555 B DG 4 1_555 0.232 -0.111 0.124 -13.576 -7.098 -1.593 9 A_DC9:DG116_B A 9 ? B 116 ? 19 1
1 A DG 10 1_555 B DC 3 1_555 -0.149 -0.105 0.273 5.561 -6.742 2.149 10 A_DG10:DC115_B A 10 ? B 115 ? 19 1
1 A DC 11 1_555 B DG 2 1_555 0.126 -0.177 0.213 0.884 -15.718 -2.131 11 A_DC11:DG114_B A 11 ? B 114 ? 19 1
1 A DG 12 1_555 B DC 1 1_555 -0.280 -0.132 0.306 4.294 -5.894 -0.990 12 A_DG12:DC113_B A 12 ? B 113 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.099 0.067 3.232 -2.414 5.203 34.432 -0.668 -0.527 3.194 8.714
4.042 34.893 1 AA_DC1DG2:DC123DG124_BB A 1 ? B 124 ? A 2 ? B 123 ?
1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.588 0.453 3.605 2.849 -6.771 42.508 1.348 -0.492 3.526 -9.256
-3.895 43.109 2 AA_DG2DC3:DG122DC123_BB A 2 ? B 123 ? A 3 ? B 122 ?
1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.221 0.552 3.008 1.683 9.321 26.296 -0.958 0.839 3.004 19.694
-3.556 27.922 3 AA_DC3DG4:DC121DG122_BB A 3 ? B 122 ? A 4 ? B 121 ?
1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.102 -0.239 3.317 -0.548 2.402 35.034 -0.759 0.086 3.295 3.983
0.909 35.117 4 AA_DG4DA5:DT120DC121_BB A 4 ? B 121 ? A 5 ? B 120 ?
1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B TFT 7 1_555 0.077 -0.607 3.356 -0.657 3.117 37.318 -1.362 -0.207 3.295 4.860
1.025 37.448 5 AA_DA5DA6:TFT119DT120_BB A 5 ? B 120 ? A 6 ? B 119 ?
1 A DA 6 1_555 B TFT 7 1_555 A TFT 7 1_555 B DA 6 1_555 0.127 -0.281 3.345 -0.235 -4.861 32.830 0.348 -0.263 3.350 -8.542
0.413 33.179 6 AA_DA6TFT7:DA118TFT119_BB A 6 ? B 119 ? A 7 ? B 118 ?
1 A TFT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.124 -0.419 3.241 1.444 0.425 35.176 -0.755 0.417 3.228 0.703
-2.388 35.207 7 AA_TFT7DT8:DA117DA118_BB A 7 ? B 118 ? A 8 ? B 117 ?
1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.306 -0.363 3.507 -0.595 -0.937 42.801 -0.396 0.356 3.517 -1.284
0.815 42.815 8 AA_DT8DC9:DG116DA117_BB A 8 ? B 117 ? A 9 ? B 116 ?
1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.615 0.728 2.962 -3.162 2.544 25.505 0.986 -2.174 2.923 5.715
7.105 25.820 9 AA_DC9DG10:DC115DG116_BB A 9 ? B 116 ? A 10 ? B 115 ?
1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.256 0.480 3.423 -2.394 -9.327 42.677 1.576 1.448 3.315 -12.624
3.241 43.700 10 AA_DG10DC11:DG114DC115_BB A 10 ? B 115 ? A 11 ? B 114 ?
1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.129 0.253 3.196 -1.110 4.807 32.666 -0.356 0.041 3.202 8.486
1.959 33.026 11 AA_DC11DG12:DC113DG114_BB A 11 ? B 114 ? A 12 ? B 113 ?
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'B-form DNA (native Dickerson-Drew dodecamer)'
#
_atom_sites.entry_id 1N1O
_atom_sites.fract_transf_matrix[1][1] 0.039562
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024950
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015184
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_