HEADER ISOMERASE 21-OCT-02 1N21 TITLE (+)-BORNYL DIPHOSPHATE SYNTHASE: COCRYSTAL WITH MG AND 3-AZA-2,3- TITLE 2 DIHYDROGERANYL DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: (+)-BORNYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUE 50-598; COMPND 5 EC: 5.5.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALVIA OFFICINALIS; SOURCE 3 ORGANISM_COMMON: GARDEN SAGE; SOURCE 4 ORGANISM_TAXID: 38868; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLR(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSBET KEYWDS TERPENE SYNTHASE FOLD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.WHITTINGTON,M.L.WISE,M.URBANSKY,R.M.COATES,R.B.CROTEAU, AUTHOR 2 D.W.CHRISTIANSON REVDAT 3 14-FEB-24 1N21 1 REMARK LINK REVDAT 2 24-FEB-09 1N21 1 VERSN REVDAT 1 27-NOV-02 1N21 0 JRNL AUTH D.A.WHITTINGTON,M.L.WISE,M.URBANSKY,R.M.COATES,R.B.CROTEAU, JRNL AUTH 2 D.W.CHRISTIANSON JRNL TITL BORNYL DIPHOSPHATE SYNTHASE: STRUCTURE AND STRATEGY FOR JRNL TITL 2 CARBOCATION MANIPULATION BY A TERPENOID SYNTHASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 15375 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12432096 JRNL DOI 10.1073/PNAS.232591099 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2072 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3964 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 311 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.72000 REMARK 3 B22 (A**2) : 1.72000 REMARK 3 B33 (A**2) : -3.43000 REMARK 3 B12 (A**2) : 2.95000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 7.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 11.580; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 11.090; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 16.250; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 16.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : AGP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : AGP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESOLUTION-DEPENDENT WEIGHTING SCHEME, REMARK 3 BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1N21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26476 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 33.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21500 REMARK 200 FOR SHELL : 13.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1N1B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, GLYCEROL, BIS-TRIS, REMARK 280 MAGNESIUM CHLORIDE, DITHIOTHREITOL, 2-AZA-2,3-DIHYDROGERANYL REMARK 280 DIPHOSPHATE , PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.42000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.42000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.42000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.42000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.42000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER, CONSISTING OF THE REMARK 300 MOLECULE IN THE ASYMMETRIC UNIT AND THE MOLECULE GENERATED BY THE REMARK 300 OPERATION: -Y, -X, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 99.19000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 171.80212 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.42000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 50 REMARK 465 ALA A 51 REMARK 465 HIS A 52 REMARK 465 ASN A 142 REMARK 465 ASN A 143 REMARK 465 GLU A 144 REMARK 465 VAL A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 228 REMARK 465 GLY A 229 REMARK 465 GLY A 230 REMARK 465 ASN A 231 REMARK 465 GLU A 232 REMARK 465 ILE A 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 77 31.45 -83.48 REMARK 500 ILE A 133 -12.12 -48.33 REMARK 500 ASP A 170 -3.86 -59.29 REMARK 500 ILE A 181 -80.61 -100.13 REMARK 500 SER A 186 30.24 -86.02 REMARK 500 ALA A 188 14.41 -61.62 REMARK 500 PHE A 217 -72.53 -63.09 REMARK 500 LYS A 225 -1.72 -54.50 REMARK 500 HIS A 333 44.05 -92.00 REMARK 500 VAL A 356 -55.78 -137.20 REMARK 500 ASP A 374 -163.42 -108.19 REMARK 500 ALA A 453 2.72 53.75 REMARK 500 TYR A 481 78.25 92.01 REMARK 500 HIS A 482 152.50 -45.78 REMARK 500 THR A 521 16.60 -143.51 REMARK 500 ASN A 522 38.80 39.79 REMARK 500 ASP A 576 -98.71 -61.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 351 OD1 REMARK 620 2 ASP A 355 OD2 67.6 REMARK 620 3 3AG A 900 O5 71.0 78.8 REMARK 620 4 HOH A 921 O 123.7 71.0 64.8 REMARK 620 5 HOH A 922 O 85.8 142.0 66.7 106.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 351 OD2 REMARK 620 2 ASP A 351 OD1 44.8 REMARK 620 3 ASP A 355 OD2 78.6 60.5 REMARK 620 4 3AG A 900 O1 86.7 127.3 141.1 REMARK 620 5 3AG A 900 O3 72.6 84.3 144.5 57.7 REMARK 620 6 3AG A 900 O5 91.7 60.6 102.8 113.5 58.7 REMARK 620 7 HOH A 920 O 79.3 108.5 69.5 72.6 123.1 169.1 REMARK 620 8 HOH A 921 O 121.8 77.3 65.4 148.1 113.9 56.9 123.0 REMARK 620 9 HOH A 923 O 145.3 160.5 101.7 71.3 113.7 121.3 68.8 88.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 496 OD1 REMARK 620 2 THR A 500 OG1 82.7 REMARK 620 3 GLU A 504 OE2 163.1 84.7 REMARK 620 4 3AG A 900 O4 104.8 103.7 89.1 REMARK 620 5 3AG A 900 O6 112.7 157.1 76.5 89.0 REMARK 620 6 HOH A 919 O 78.7 79.2 88.0 175.7 87.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3AG A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N1B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (+)-BORNYL DIPHOSPHATE SYNTHASE FROM SAGE REMARK 900 RELATED ID: 1N1Z RELATED DB: PDB REMARK 900 (+)-BORNYL DIPHOSPHATE SYNTHASE: COMPLEX WITH MG AND PYROPHOSPHATE REMARK 900 RELATED ID: 1N20 RELATED DB: PDB REMARK 900 (+)-BORNYL DIPHOSPHATE SYNTHASE: COMPLEX WITH MG AND 3-AZA-2,3- REMARK 900 DIHYDROGERANYL DIPHOSPHATE REMARK 900 RELATED ID: 1N22 RELATED DB: PDB REMARK 900 (+)-BORNYL DIPHOSPHATE SYNTHASE: COMPLEX WITH MG, PYROPHOSPHATE, REMARK 900 AND (4R)-7-AZA-7,8-DIHYDROLIMONENE REMARK 900 RELATED ID: 1N23 RELATED DB: PDB REMARK 900 (+)-BORNYL DIPHOSPHATE SYNTHASE: COMPLEX WITH MG, PYROPHOSPHATE, REMARK 900 AND (1R,4S)-2-AZABORNANE REMARK 900 RELATED ID: 1N24 RELATED DB: PDB REMARK 900 (+)-BORNYL DIPHOSPHATE SYNTHASE: COMPLEX WITH MG AND PRODUCT DBREF 1N21 A 50 598 UNP O81192 BPPS_SALOF 50 598 SEQRES 1 A 549 GLU ALA HIS GLN ILE ARG ARG SER GLY ASN TYR GLN PRO SEQRES 2 A 549 ALA LEU TRP ASP SER ASN TYR ILE GLN SER LEU ASN THR SEQRES 3 A 549 PRO TYR THR GLU GLU ARG HIS LEU ASP ARG LYS ALA GLU SEQRES 4 A 549 LEU ILE VAL GLN VAL ARG ILE LEU LEU LYS GLU LYS MET SEQRES 5 A 549 GLU PRO VAL GLN GLN LEU GLU LEU ILE HIS ASP LEU LYS SEQRES 6 A 549 TYR LEU GLY LEU SER ASP PHE PHE GLN ASP GLU ILE LYS SEQRES 7 A 549 GLU ILE LEU GLY VAL ILE TYR ASN GLU HIS LYS CYS PHE SEQRES 8 A 549 HIS ASN ASN GLU VAL GLU LYS MET ASP LEU TYR PHE THR SEQRES 9 A 549 ALA LEU GLY PHE ARG LEU LEU ARG GLN HIS GLY PHE ASN SEQRES 10 A 549 ILE SER GLN ASP VAL PHE ASN CYS PHE LYS ASN GLU LYS SEQRES 11 A 549 GLY ILE ASP PHE LYS ALA SER LEU ALA GLN ASP THR LYS SEQRES 12 A 549 GLY MET LEU GLN LEU TYR GLU ALA SER PHE LEU LEU ARG SEQRES 13 A 549 LYS GLY GLU ASP THR LEU GLU LEU ALA ARG GLU PHE ALA SEQRES 14 A 549 THR LYS CYS LEU GLN LYS LYS LEU ASP GLU GLY GLY ASN SEQRES 15 A 549 GLU ILE ASP GLU ASN LEU LEU LEU TRP ILE ARG HIS SER SEQRES 16 A 549 LEU ASP LEU PRO LEU HIS TRP ARG ILE GLN SER VAL GLU SEQRES 17 A 549 ALA ARG TRP PHE ILE ASP ALA TYR ALA ARG ARG PRO ASP SEQRES 18 A 549 MET ASN PRO LEU ILE PHE GLU LEU ALA LYS LEU ASN PHE SEQRES 19 A 549 ASN ILE ILE GLN ALA THR HIS GLN GLN GLU LEU LYS ASP SEQRES 20 A 549 LEU SER ARG TRP TRP SER ARG LEU CYS PHE PRO GLU LYS SEQRES 21 A 549 LEU PRO PHE VAL ARG ASP ARG LEU VAL GLU SER PHE PHE SEQRES 22 A 549 TRP ALA VAL GLY MET PHE GLU PRO HIS GLN HIS GLY TYR SEQRES 23 A 549 GLN ARG LYS MET ALA ALA THR ILE ILE VAL LEU ALA THR SEQRES 24 A 549 VAL ILE ASP ASP ILE TYR ASP VAL TYR GLY THR LEU ASP SEQRES 25 A 549 GLU LEU GLU LEU PHE THR ASP THR PHE LYS ARG TRP ASP SEQRES 26 A 549 THR GLU SER ILE THR ARG LEU PRO TYR TYR MET GLN LEU SEQRES 27 A 549 CYS TYR TRP GLY VAL HIS ASN TYR ILE SER ASP ALA ALA SEQRES 28 A 549 TYR ASP ILE LEU LYS GLU HIS GLY PHE PHE CYS LEU GLN SEQRES 29 A 549 TYR LEU ARG LYS SER VAL VAL ASP LEU VAL GLU ALA TYR SEQRES 30 A 549 PHE HIS GLU ALA LYS TRP TYR HIS SER GLY TYR THR PRO SEQRES 31 A 549 SER LEU ASP GLU TYR LEU ASN ILE ALA LYS ILE SER VAL SEQRES 32 A 549 ALA SER PRO ALA ILE ILE SER PRO THR TYR PHE THR PHE SEQRES 33 A 549 ALA ASN ALA SER HIS ASP THR ALA VAL ILE ASP SER LEU SEQRES 34 A 549 TYR GLN TYR HIS ASP ILE LEU CYS LEU ALA GLY ILE ILE SEQRES 35 A 549 LEU ARG LEU PRO ASP ASP LEU GLY THR SER TYR PHE GLU SEQRES 36 A 549 LEU ALA ARG GLY ASP VAL PRO LYS THR ILE GLN CYS TYR SEQRES 37 A 549 MET LYS GLU THR ASN ALA SER GLU GLU GLU ALA VAL GLU SEQRES 38 A 549 HIS VAL LYS PHE LEU ILE ARG GLU ALA TRP LYS ASP MET SEQRES 39 A 549 ASN THR ALA ILE ALA ALA GLY TYR PRO PHE PRO ASP GLY SEQRES 40 A 549 MET VAL ALA GLY ALA ALA ASN ILE GLY ARG VAL ALA GLN SEQRES 41 A 549 PHE ILE TYR LEU HIS GLY ASP GLY PHE GLY VAL GLN HIS SEQRES 42 A 549 SER LYS THR TYR GLU HIS ILE ALA GLY LEU LEU PHE GLU SEQRES 43 A 549 PRO TYR ALA HET MG A 701 1 HET MG A 702 1 HET MG A 703 1 HET 3AG A 900 19 HETNAM MG MAGNESIUM ION HETNAM 3AG 2-[METHYL-(4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL- HETNAM 2 3AG DIPHOSPHATE HETSYN 3AG 3-AZA-2,3-DIHYDROGERANYL DIPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 3AG C9 H18 N O7 P2 3- FORMUL 6 HOH *26(H2 O) HELIX 1 1 ASP A 66 SER A 72 1 7 HELIX 2 2 GLU A 79 GLU A 99 1 21 HELIX 3 3 GLU A 102 LEU A 116 1 15 HELIX 4 4 LEU A 118 PHE A 121 5 4 HELIX 5 5 PHE A 122 GLU A 136 1 15 HELIX 6 6 ASP A 149 HIS A 163 1 15 HELIX 7 7 SER A 168 LYS A 176 5 9 HELIX 8 8 LYS A 184 ALA A 188 5 5 HELIX 9 9 ASP A 190 PHE A 202 1 13 HELIX 10 10 GLU A 208 LYS A 225 1 18 HELIX 11 11 ASP A 234 LEU A 247 1 14 HELIX 12 12 PRO A 248 ARG A 252 5 5 HELIX 13 13 ILE A 253 ARG A 267 1 15 HELIX 14 14 ASN A 272 CYS A 305 1 34 HELIX 15 15 CYS A 305 LEU A 310 1 6 HELIX 16 16 ARG A 316 PHE A 328 1 13 HELIX 17 17 HIS A 333 VAL A 356 1 24 HELIX 18 18 THR A 359 TRP A 373 1 15 HELIX 19 19 GLU A 376 LEU A 381 5 6 HELIX 20 20 PRO A 382 GLY A 408 1 27 HELIX 21 21 CYS A 411 GLY A 436 1 26 HELIX 22 22 SER A 440 VAL A 452 1 13 HELIX 23 23 ALA A 453 PHE A 463 1 11 HELIX 24 24 ASP A 471 HIS A 482 1 12 HELIX 25 25 HIS A 482 GLY A 508 1 27 HELIX 26 26 LYS A 512 ASN A 522 1 11 HELIX 27 27 SER A 524 ALA A 549 1 26 HELIX 28 28 PRO A 554 TYR A 572 1 19 HELIX 29 29 GLN A 581 LYS A 584 5 4 HELIX 30 30 THR A 585 PHE A 594 1 10 LINK OD1 ASP A 351 MG MG A 701 1555 1555 2.23 LINK OD2 ASP A 351 MG MG A 703 1555 1555 2.14 LINK OD1 ASP A 351 MG MG A 703 1555 1555 3.11 LINK OD2 ASP A 355 MG MG A 701 1555 1555 2.78 LINK OD2 ASP A 355 MG MG A 703 1555 1555 2.33 LINK OD1 ASP A 496 MG MG A 702 1555 1555 2.16 LINK OG1 THR A 500 MG MG A 702 1555 1555 2.15 LINK OE2 GLU A 504 MG MG A 702 1555 1555 2.23 LINK MG MG A 701 O5 3AG A 900 1555 1555 2.48 LINK MG MG A 701 O HOH A 921 1555 1555 2.02 LINK MG MG A 701 O HOH A 922 1555 1555 2.24 LINK MG MG A 702 O4 3AG A 900 1555 1555 1.79 LINK MG MG A 702 O6 3AG A 900 1555 1555 2.05 LINK MG MG A 702 O HOH A 919 1555 1555 2.12 LINK MG MG A 703 O1 3AG A 900 1555 1555 2.31 LINK MG MG A 703 O3 3AG A 900 1555 1555 3.03 LINK MG MG A 703 O5 3AG A 900 1555 1555 1.94 LINK MG MG A 703 O HOH A 920 1555 1555 2.25 LINK MG MG A 703 O HOH A 921 1555 1555 2.88 LINK MG MG A 703 O HOH A 923 1555 1555 2.37 SITE 1 AC1 7 ASP A 351 ASP A 355 GLU A 429 MG A 703 SITE 2 AC1 7 3AG A 900 HOH A 921 HOH A 922 SITE 1 AC2 5 ASP A 496 THR A 500 GLU A 504 3AG A 900 SITE 2 AC2 5 HOH A 919 SITE 1 AC3 7 ASP A 351 ASP A 355 MG A 701 3AG A 900 SITE 2 AC3 7 HOH A 920 HOH A 921 HOH A 923 SITE 1 AC4 23 ARG A 314 ILE A 344 ASP A 351 ASP A 355 SITE 2 AC4 23 ILE A 457 LEU A 492 ARG A 493 ASP A 496 SITE 3 AC4 23 THR A 500 GLU A 504 LYS A 512 TYR A 572 SITE 4 AC4 23 PHE A 578 MG A 701 MG A 702 MG A 703 SITE 5 AC4 23 HOH A 919 HOH A 920 HOH A 921 HOH A 922 SITE 6 AC4 23 HOH A 923 HOH A 925 HOH A 926 CRYST1 198.380 198.380 122.840 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005041 0.002910 0.000000 0.00000 SCALE2 0.000000 0.005821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008141 0.00000