HEADER PROTEIN TRANSPORT 08-NOV-02 1N5Z TITLE COMPLEX STRUCTURE OF PEX13P SH3 DOMAIN WITH A PEPTIDE OF PEX14P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL MEMBRANE PROTEIN PAS20; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: PEROXIN-13, PEX13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 14-MER PEPTIDE FROM PEROXISOMAL MEMBRANE PROTEIN PEX14; COMPND 9 CHAIN: P, Q; COMPND 10 SYNONYM: PEROXIN-14; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALC2; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: CHEMICALLY SYNTHESIZED. THIS SEQUENCE OCCURS SOURCE 13 NATURALLY IN SACCHAROMYCES CEREVISIAE. KEYWDS SH3 DOMAIN, PXXP MOTIF, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.DOUANGAMATH,F.V.FILIPP,A.T.J.KLEIN,P.BARNETT,P.ZOU,T.VOORN-BROUWER, AUTHOR 2 M.C.VEGA,O.M.MAYANS,M.SATTLER,B.DISTEL,M.WILMANNS REVDAT 3 13-MAR-24 1N5Z 1 REMARK SEQADV REVDAT 2 24-FEB-09 1N5Z 1 VERSN REVDAT 1 11-DEC-02 1N5Z 0 JRNL AUTH A.DOUANGAMATH,F.V.FILIPP,A.T.J.KLEIN,P.BARNETT,P.ZOU, JRNL AUTH 2 T.VOORN-BROUWER,M.C.VEGA,O.M.MAYANS,M.SATTLER,B.DISTEL, JRNL AUTH 3 M.WILMANNS JRNL TITL TOPOGRAPHY FOR INDEPENDENT BINDING OF ALPHA-HELICAL AND JRNL TITL 2 PPII-HELICAL LIGANDS TO A PEROXISOMAL SH3 DOMAIN JRNL REF MOL.CELL V. 10 1007 2002 JRNL REFN ISSN 1097-2765 JRNL PMID 12453410 JRNL DOI 10.1016/S1097-2765(02)00749-9 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 5563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 2.31000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.360 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.371 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.558 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1329 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1808 ; 1.768 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 3.548 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 243 ;15.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1034 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 604 ; 0.280 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 131 ; 0.160 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.269 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.182 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 809 ; 0.870 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1301 ; 1.631 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 520 ; 2.141 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 507 ; 3.506 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9760 14.8270 15.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.0067 REMARK 3 T33: 0.1314 T12: -0.0185 REMARK 3 T13: -0.0512 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 5.3703 L22: 6.6867 REMARK 3 L33: 7.0682 L12: -0.3830 REMARK 3 L13: -1.2901 L23: -0.3158 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.3273 S13: -0.2782 REMARK 3 S21: -0.2535 S22: -0.1054 S23: -0.1954 REMARK 3 S31: -0.0356 S32: -0.1128 S33: 0.1106 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7510 30.6190 -0.1690 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.0630 REMARK 3 T33: 0.1237 T12: -0.0082 REMARK 3 T13: -0.0037 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 8.7024 L22: 5.7616 REMARK 3 L33: 8.0826 L12: -0.5269 REMARK 3 L13: -2.5921 L23: -0.1449 REMARK 3 S TENSOR REMARK 3 S11: -0.2052 S12: 0.5857 S13: -0.4655 REMARK 3 S21: -0.0367 S22: 0.1227 S23: 0.0307 REMARK 3 S31: 0.4923 S32: -0.2958 S33: 0.0824 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 4 P 12 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5300 21.6240 25.4930 REMARK 3 T TENSOR REMARK 3 T11: 0.2241 T22: 0.2148 REMARK 3 T33: 0.1963 T12: 0.0116 REMARK 3 T13: -0.0655 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 29.5623 L22: 11.7474 REMARK 3 L33: 18.1747 L12: -4.9429 REMARK 3 L13: 14.2515 L23: 2.1202 REMARK 3 S TENSOR REMARK 3 S11: 0.9774 S12: -0.7634 S13: 0.1905 REMARK 3 S21: -0.9687 S22: -0.6778 S23: 0.6756 REMARK 3 S31: -0.0088 S32: -0.7528 S33: -0.2996 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 4 Q 12 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2730 39.9380 7.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.2553 T22: 0.2694 REMARK 3 T33: 0.4309 T12: 0.0491 REMARK 3 T13: 0.0301 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 49.2938 L22: 9.4597 REMARK 3 L33: 12.8367 L12: 9.5736 REMARK 3 L13: 16.0933 L23: 19.2731 REMARK 3 S TENSOR REMARK 3 S11: -0.9187 S12: -2.2901 S13: 0.2786 REMARK 3 S21: 0.8047 S22: 0.1106 S23: -2.2550 REMARK 3 S31: 1.1714 S32: 1.3592 S33: 0.8081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5907 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.00650 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.03300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, LITHIUM SULFATE, REMARK 280 TRIS, PH 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.46750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.60200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.46750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.60200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -25.17500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 31.60200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -50.35000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 PHE A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 ARG A 78 REMARK 465 ARG A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 ILE A 82 REMARK 465 GLU A 83 REMARK 465 HIS A 84 REMARK 465 VAL A 85 REMARK 465 ASP A 86 REMARK 465 ASP A 87 REMARK 465 GLU A 88 REMARK 465 THR A 89 REMARK 465 ARG A 90 REMARK 465 THR A 91 REMARK 465 HIS A 92 REMARK 465 GLU P 1 REMARK 465 ALA P 2 REMARK 465 LYS P 13 REMARK 465 ASP P 14 REMARK 465 ILE B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 PHE B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 465 ILE B 9 REMARK 465 ASP B 10 REMARK 465 LYS B 80 REMARK 465 LYS B 81 REMARK 465 ILE B 82 REMARK 465 GLU B 83 REMARK 465 HIS B 84 REMARK 465 VAL B 85 REMARK 465 ASP B 86 REMARK 465 ASP B 87 REMARK 465 GLU B 88 REMARK 465 THR B 89 REMARK 465 ARG B 90 REMARK 465 THR B 91 REMARK 465 HIS B 92 REMARK 465 GLU Q 1 REMARK 465 ALA Q 2 REMARK 465 LYS Q 13 REMARK 465 ASP Q 14 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 7 CG CD OE1 OE2 REMARK 480 LYS A 13 CG CD CE NZ REMARK 480 LYS A 36 CG CD CE NZ REMARK 480 LYS A 61 CG CD CE NZ REMARK 480 SER B 12 OG REMARK 480 LYS B 13 CG CD CE NZ REMARK 480 GLU B 29 CG CD OE1 OE2 REMARK 480 MET B 30 CG SD CE REMARK 480 SER B 53 OG REMARK 480 LYS B 61 CG CD CE NZ REMARK 480 ASN B 62 CG OD1 ND2 REMARK 480 LYS B 77 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 LEU A 39 NZ LYS B 61 4455 0.98 REMARK 500 CD1 LEU A 39 CE LYS B 61 4455 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 22 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 47 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 54 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 11 -12.92 -48.45 REMARK 500 PRO A 48 -5.89 -59.56 REMARK 500 SER B 12 -56.55 -134.12 REMARK 500 ARG B 78 165.00 125.30 REMARK 500 ARG Q 10 132.47 -179.21 REMARK 500 ASP Q 11 42.98 -85.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 1N5Z A 5 92 UNP P80667 PEX13_YEAST 299 386 DBREF 1N5Z B 5 92 UNP P80667 PEX13_YEAST 299 386 DBREF 1N5Z P 1 14 UNP P53112 PEX14_YEAST 83 96 DBREF 1N5Z Q 1 14 UNP P53112 PEX14_YEAST 83 96 SEQADV 1N5Z ILE A 1 UNP P80667 CLONING ARTIFACT SEQADV 1N5Z SER A 2 UNP P80667 CLONING ARTIFACT SEQADV 1N5Z GLU A 3 UNP P80667 CLONING ARTIFACT SEQADV 1N5Z PHE A 4 UNP P80667 CLONING ARTIFACT SEQADV 1N5Z ILE B 1 UNP P80667 CLONING ARTIFACT SEQADV 1N5Z SER B 2 UNP P80667 CLONING ARTIFACT SEQADV 1N5Z GLU B 3 UNP P80667 CLONING ARTIFACT SEQADV 1N5Z PHE B 4 UNP P80667 CLONING ARTIFACT SEQRES 1 A 92 ILE SER GLU PHE GLY SER GLU PRO ILE ASP PRO SER LYS SEQRES 2 A 92 LEU GLU PHE ALA ARG ALA LEU TYR ASP PHE VAL PRO GLU SEQRES 3 A 92 ASN PRO GLU MET GLU VAL ALA LEU LYS LYS GLY ASP LEU SEQRES 4 A 92 MET ALA ILE LEU SER LYS LYS ASP PRO LEU GLY ARG ASP SEQRES 5 A 92 SER ASP TRP TRP LYS VAL ARG THR LYS ASN GLY ASN ILE SEQRES 6 A 92 GLY TYR ILE PRO TYR ASN TYR ILE GLU ILE ILE LYS ARG SEQRES 7 A 92 ARG LYS LYS ILE GLU HIS VAL ASP ASP GLU THR ARG THR SEQRES 8 A 92 HIS SEQRES 1 P 14 GLU ALA MET PRO PRO THR LEU PRO HIS ARG ASP TRP LYS SEQRES 2 P 14 ASP SEQRES 1 B 92 ILE SER GLU PHE GLY SER GLU PRO ILE ASP PRO SER LYS SEQRES 2 B 92 LEU GLU PHE ALA ARG ALA LEU TYR ASP PHE VAL PRO GLU SEQRES 3 B 92 ASN PRO GLU MET GLU VAL ALA LEU LYS LYS GLY ASP LEU SEQRES 4 B 92 MET ALA ILE LEU SER LYS LYS ASP PRO LEU GLY ARG ASP SEQRES 5 B 92 SER ASP TRP TRP LYS VAL ARG THR LYS ASN GLY ASN ILE SEQRES 6 B 92 GLY TYR ILE PRO TYR ASN TYR ILE GLU ILE ILE LYS ARG SEQRES 7 B 92 ARG LYS LYS ILE GLU HIS VAL ASP ASP GLU THR ARG THR SEQRES 8 B 92 HIS SEQRES 1 Q 14 GLU ALA MET PRO PRO THR LEU PRO HIS ARG ASP TRP LYS SEQRES 2 Q 14 ASP FORMUL 5 HOH *18(H2 O) HELIX 1 1 ASP A 10 LEU A 14 5 5 SHEET 1 A 5 ILE A 65 PRO A 69 0 SHEET 2 A 5 ASP A 52 THR A 60 -1 N VAL A 58 O GLY A 66 SHEET 3 A 5 LEU A 39 LYS A 46 -1 N ALA A 41 O ARG A 59 SHEET 4 A 5 GLU A 15 ALA A 19 -1 N ALA A 17 O MET A 40 SHEET 5 A 5 ILE A 73 ILE A 76 -1 O ILE A 76 N PHE A 16 SHEET 1 B 5 ILE B 65 PRO B 69 0 SHEET 2 B 5 ASP B 52 THR B 60 -1 N TRP B 56 O ILE B 68 SHEET 3 B 5 LEU B 39 LYS B 46 -1 N ALA B 41 O ARG B 59 SHEET 4 B 5 PHE B 16 ALA B 19 -1 N ALA B 17 O MET B 40 SHEET 5 B 5 ILE B 73 ILE B 75 -1 O GLU B 74 N ARG B 18 CRYST1 50.350 63.204 66.935 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014940 0.00000