HEADER VIRAL PROTEIN 18-NOV-02 1N7U TITLE THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADSORPTION PROTEIN P2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RECEPTOR-BINDING PROTEIN PRD1-P2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE PRD1; SOURCE 3 ORGANISM_TAXID: 10658; SOURCE 4 GENE: II; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMG59 KEYWDS BACTERIOPHAGE PRD1, VIRAL RECEPTOR-BINDING, BETA-PROPELLER, PROLINE- KEYWDS 2 RICH, ANTIBIOTIC-RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.XU,S.D.BENSON,S.J.BUTCHER,D.H.BAMFORD,R.M.BURNETT REVDAT 5 06-NOV-24 1N7U 1 REMARK REVDAT 4 03-APR-24 1N7U 1 REMARK LINK REVDAT 3 25-OCT-17 1N7U 1 REMARK REVDAT 2 24-FEB-09 1N7U 1 VERSN REVDAT 1 08-APR-03 1N7U 0 JRNL AUTH L.XU,S.D.BENSON,S.J.BUTCHER,D.H.BAMFORD,R.M.BURNETT JRNL TITL THE RECEPTOR BINDING PROTEIN P2 OF PRD1, A VIRUS TARGETING JRNL TITL 2 ANTIBIOTIC-RESISTANT BACTERIA, HAS A NOVEL FOLD SUGGESTING JRNL TITL 3 MULTIPLE FUNCTIONS. JRNL REF STRUCTURE V. 11 309 2003 JRNL PUBL 0353 JRNL REFN ISSN 0969-2126 JRNL PMID 12623018 JRNL DOI 10.1016/S0969-2126(03)00023-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.XU,S.J.BUTCHER,S.D.BENSON,D.H.BAMFORD,R.M.BURNETT REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPAHGE PRD1 REMARK 1 REF J.STRUCT.BIOL. V. 131 159 2000 REMARK 1 REFN ISSN 1047-8477 REMARK 1 DOI 10.1006/JSBI.2000.4275 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.M.GRAHN,J.CALDENTEY,J.K.H.BAMFORD,D.H.BAMFORD REMARK 1 TITL STABLE PACKING OF PHAGE PRD1 DNA REQUIRES ADSORPTION PROTEIN REMARK 1 TITL 2 P2, WHICH BINDS TO THE INCP PLASMID-ENCODED CONJUGATIVE REMARK 1 TITL 3 TRANSFER COMPLEX REMARK 1 REF J.BACTERIOL. V. 181 6689 1999 REMARK 1 REFN ISSN 0021-9193 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.H.BAMFORD,J.CALDENTEY,J.K.H.BAMFORD REMARK 1 TITL BACTERIOPHAGE PRD1: A BROAD HOST RANGE DSDNA TECTIVIRUS WITH REMARK 1 TITL 2 AN INTERNAL MEMBRANE REMARK 1 REF ADV.VIRUS RES. V. 45 281 1995 REMARK 1 REFN REMARK 1 REFERENCE 4 REMARK 1 AUTH S.D.BENSON,J.K.H.BAMFORD,D.H.BAMFORD,R.M.BURNETT REMARK 1 TITL VIRAL EVOLUTION REVEALED BY BACTERIOPHAGE PRD1 AND HUMAN REMARK 1 TITL 2 ADENOVIRUS COAT PROTEIN STRUCTURES REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 98 825 1999 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(00)81516-0 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.S.RYDMAN,J.CALDENTEY,S.J.BUTCHER,S.D.FULLER,T.RUTTEN, REMARK 1 AUTH 2 D.H.BAMFORD REMARK 1 TITL BACTERIOPHAGE PRD1 CONTAINS A LABILE RECEPTOR-BINDING REMARK 1 TITL 2 STRUCTURE AT EACH VERTEX REMARK 1 REF J.MOL.BIOL. V. 291 575 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1999.2978 REMARK 1 REFERENCE 6 REMARK 1 AUTH L.XU REMARK 1 TITL A TALE OF TWO VIRUSES WITH THERAPEUTIC POTENTIAL: STRUCTURAL REMARK 1 TITL 2 STUDIES ON CELO, AN AVIAN ADENOVIRUS AND THE BACTERIOPHAGE REMARK 1 TITL 3 PRD1 REMARK 1 REF THESIS 2002 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.2 REMARK 3 NUMBER OF REFLECTIONS : 29457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3494 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 56 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.057 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -25.23000 REMARK 3 B22 (A**2) : 36.00000 REMARK 3 B33 (A**2) : -10.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.530 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 32.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ACY.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : ACY.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: SE-MET P2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.1 M SODIUM ACETATE, 20 MM REMARK 280 CACL2, PH 4.6, VAPOR DIFFUSION, HANGING DROP, MACROSEEDING, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOCHEMICAL EVIDENCE (GEL FILTRATION, LOW ANGLE X-RAY REMARK 300 SCATTERING, RATE-ZONAL ULTRACENTRIFUGATION, AND DYNAMIC LIGHT REMARK 300 SCATTERING) INDICATE THAT P2 IS MONOMERIC, BUT A POTENTIAL DIMER REMARK 300 APPEARS IN 3 CRYSTAL WITH DIFFERENT SPACE GROUPS AND IS OBTAINED REMARK 300 FOR THIS CRYSTAL FORM BY THE FOLLOWING SYMMETRY OPERATION: X, -Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 351 REMARK 351 THE BIOMOLECULE IS MOST PROBABLY A MONOMER. REMARK 351 NEVERTHELESS, IT IS NOTABLE THAT THE SAME REMARK 351 DIMER APPEARS IN THE TWO CRYSTAL FORMS (1N7U REMARK 351 AND 1N7V). ALTHOUGH THE BURIED SURFACE PER REMARK 351 SUBUNIT IN THE DIMER IS ~1,206 A**2, WHICH REMARK 351 IS RELATIVELY SUBSTANTIAL, IT ONLY REPRESENTS REMARK 351 ~5.5% OF THE SURFACE AREA OF THE P2 MONOMER. REMARK 351 RATE ZONAL CENTRIFUGATION, GEL FILTRATION, REMARK 351 CROSS-LINKING, SEDIMENTATION EQUILIBRIUM AND REMARK 351 LOW ANGLE X-RAY SCATTERING STRONGLY SUGGEST THAT REMARK 351 P2 IS A MONOMER IN SOLUTION. FURTHERMORE, DYNAMIC REMARK 351 LIGHT SCATTERING MEASUREMENTS INDICATED A REMARK 351 MONODISPERSE SOLUTION WITH AN APPARENT MOLECULAR REMARK 351 WEIGHT OF 79 KDA, WHICH IS IN REASONABLE AGREEMENT REMARK 351 WITH THAT FOR THE MONOMER (63.9 KDA). NEVERTHELESS, REMARK 351 P2 MAY FORM A LOOSELY ASSOCIATED DIMER WHEN REMARK 351 BOUND TO THE VIRION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 ASP A 515 CG OD1 OD2 REMARK 470 GLU A 539 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 53.52 -107.41 REMARK 500 ASP A 107 113.15 -173.79 REMARK 500 TRP A 204 -91.49 -28.03 REMARK 500 LYS A 262 175.16 177.49 REMARK 500 ASN A 291 65.72 166.32 REMARK 500 THR A 347 -82.60 -120.71 REMARK 500 SER A 351 -171.07 -176.12 REMARK 500 ASP A 385 -110.78 63.64 REMARK 500 SER A 399 4.57 -61.90 REMARK 500 THR A 427 -109.14 -119.17 REMARK 500 ILE A 440 -31.13 -130.71 REMARK 500 ALA A 472 -134.68 53.27 REMARK 500 ALA A 479 51.26 116.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 425 OD1 REMARK 620 2 LYS A 426 O 96.6 REMARK 620 3 SER A 462 O 142.8 83.8 REMARK 620 4 HOH A 717 O 67.7 104.5 76.2 REMARK 620 5 HOH A 718 O 96.0 167.3 85.2 78.9 REMARK 620 6 HOH A 719 O 125.3 84.0 91.8 164.2 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N7V RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SPACE GROUP DBREF 1N7U A 2 555 UNP P27378 VP02_BPPRD 1 554 SEQRES 1 A 554 ALA ASN PHE ASN VAL PRO LYS LEU GLY VAL PHE PRO VAL SEQRES 2 A 554 ALA ALA VAL PHE ASP ILE ASP ASN VAL PRO GLU ASP SER SEQRES 3 A 554 SER ALA THR GLY SER ARG TRP LEU PRO SER ILE TYR GLN SEQRES 4 A 554 GLY GLY ASN TYR TRP GLY GLY GLY PRO GLN ALA LEU HIS SEQRES 5 A 554 ALA GLN VAL SER ASN PHE ASP SER SER ASN ARG LEU PRO SEQRES 6 A 554 TYR ASN PRO ARG THR GLU ASN ASN PRO ALA GLY ASN CYS SEQRES 7 A 554 ALA PHE ALA PHE ASN PRO PHE GLY GLN TYR ILE SER ASN SEQRES 8 A 554 ILE SER SER ALA GLN SER VAL HIS ARG ARG ILE TYR GLY SEQRES 9 A 554 ILE ASP LEU ASN ASP GLU PRO LEU PHE SER PRO ASN ALA SEQRES 10 A 554 ALA SER ILE THR ASN GLY GLY ASN PRO THR MET SER GLN SEQRES 11 A 554 ASP THR GLY TYR HIS ASN ILE GLY PRO ILE ASN THR ALA SEQRES 12 A 554 TYR LYS ALA GLU ILE PHE ARG PRO VAL ASN PRO LEU PRO SEQRES 13 A 554 MET SER ASP THR ALA PRO ASP PRO GLU THR LEU GLU PRO SEQRES 14 A 554 GLY GLN THR GLU PRO LEU ILE LYS SER ASP GLY VAL TYR SEQRES 15 A 554 SER ASN SER GLY ILE ALA SER PHE ILE PHE ASP ARG PRO SEQRES 16 A 554 VAL THR GLU PRO ASN PRO ASN TRP PRO PRO LEU PRO PRO SEQRES 17 A 554 PRO VAL ILE PRO ILE ILE TYR PRO THR PRO ALA LEU GLY SEQRES 18 A 554 ILE GLY ALA ALA ALA ALA TYR GLY PHE GLY TYR GLN VAL SEQRES 19 A 554 THR VAL TYR ARG TRP GLU GLU ILE PRO VAL GLU PHE ILE SEQRES 20 A 554 ALA ASP PRO GLU THR CYS PRO ALA GLN PRO THR THR ASP SEQRES 21 A 554 LYS VAL ILE ILE ARG THR THR ASP LEU ASN PRO GLU GLY SEQRES 22 A 554 SER PRO CYS ALA TYR GLU ALA GLY ILE ILE LEU VAL ARG SEQRES 23 A 554 GLN THR SER ASN PRO MET ASN ALA VAL ALA GLY ARG LEU SEQRES 24 A 554 VAL PRO TYR VAL GLU ASP ILE ALA VAL ASP ILE PHE LEU SEQRES 25 A 554 THR GLY LYS PHE PHE THR LEU ASN PRO PRO LEU ARG ILE SEQRES 26 A 554 THR ASN ASN TYR PHE ALA ASP ASP GLU VAL LYS GLU ASN SEQRES 27 A 554 THR VAL THR ILE GLY ASN TYR THR THR THR LEU SER SER SEQRES 28 A 554 ALA TYR TYR ALA VAL TYR LYS THR ASP GLY TYR GLY GLY SEQRES 29 A 554 ALA THR CYS PHE ILE ALA SER GLY GLY ALA GLY ILE SER SEQRES 30 A 554 ALA LEU VAL GLN LEU GLN ASP ASN SER VAL LEU ASP VAL SEQRES 31 A 554 LEU TYR TYR SER LEU PRO LEU SER LEU GLY GLY SER LYS SEQRES 32 A 554 ALA ALA ILE ASP GLU TRP VAL ALA ASN ASN CYS GLY LEU SEQRES 33 A 554 PHE PRO MET SER GLY GLY LEU ASP LYS THR THR LEU LEU SEQRES 34 A 554 GLU ILE PRO ARG ARG GLN LEU GLU ALA ILE ASN PRO GLN SEQRES 35 A 554 ASP GLY PRO GLY GLN TYR ASP LEU PHE ILE LEU ASP ASP SEQRES 36 A 554 SER GLY ALA TYR ALA SER PHE SER SER PHE ILE GLY TYR SEQRES 37 A 554 PRO GLU ALA ALA TYR TYR VAL ALA GLY ALA ALA THR PHE SEQRES 38 A 554 MET ASP VAL GLU ASN PRO ASP GLU ILE ILE PHE ILE LEU SEQRES 39 A 554 ARG ASN GLY ALA GLY TRP TYR ALA CYS GLU ILE GLY ASP SEQRES 40 A 554 ALA LEU LYS ILE ALA ASP ASP GLU PHE ASP SER VAL ASP SEQRES 41 A 554 TYR PHE ALA TYR ARG GLY GLY VAL MET PHE ILE GLY SER SEQRES 42 A 554 ALA ARG TYR THR GLU GLY GLY ASP PRO LEU PRO ILE LYS SEQRES 43 A 554 TYR ARG ALA ILE ILE PRO GLY LEU HET ACT A 560 4 HET ACT A 561 4 HET ACT A 562 4 HET CA A 601 1 HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 2 ACT 3(C2 H3 O2 1-) FORMUL 5 CA CA 2+ FORMUL 6 HOH *229(H2 O) HELIX 1 1 GLN A 40 GLY A 42 5 3 HELIX 2 2 ASN A 92 TYR A 104 1 13 HELIX 3 3 ASN A 117 ASN A 123 1 7 HELIX 4 4 GLY A 124 ASN A 126 5 3 HELIX 5 5 THR A 218 LEU A 221 5 4 HELIX 6 6 PRO A 397 GLY A 401 5 5 HELIX 7 7 SER A 403 GLY A 416 1 14 HELIX 8 8 PRO A 419 GLY A 423 5 5 HELIX 9 9 ARG A 434 ALA A 439 1 6 SHEET 1 A 4 ASN A 3 VAL A 6 0 SHEET 2 A 4 LEU A 451 LEU A 454 1 O LEU A 451 N PHE A 4 SHEET 3 A 4 LEU A 430 PRO A 433 -1 O LEU A 430 N LEU A 454 SHEET 4 A 4 ASP A 425 LYS A 426 -1 O ASP A 425 N GLU A 431 SHEET 1 B 5 LYS A 8 VAL A 11 0 SHEET 2 B 5 TRP A 501 GLU A 505 1 O TRP A 501 N LEU A 9 SHEET 3 B 5 GLU A 490 LEU A 495 -1 N ILE A 491 O CYS A 504 SHEET 4 B 5 TYR A 474 ALA A 480 -1 N TYR A 475 O ILE A 494 SHEET 5 B 5 ILE A 467 GLU A 471 -1 O ILE A 467 N GLY A 478 SHEET 1 C 4 VAL A 14 ASP A 19 0 SHEET 2 C 4 LYS A 547 PRO A 553 -1 O ALA A 550 N PHE A 18 SHEET 3 C 4 VAL A 529 SER A 534 -1 N MET A 530 O ILE A 551 SHEET 4 C 4 TYR A 522 ARG A 526 -1 O TYR A 522 N GLY A 533 SHEET 1 D 5 TYR A 44 TRP A 45 0 SHEET 2 D 5 TYR A 355 THR A 360 1 O TYR A 358 N TRP A 45 SHEET 3 D 5 GLY A 365 ALA A 371 -1 N THR A 367 O LYS A 359 SHEET 4 D 5 GLY A 376 GLN A 384 -1 N ALA A 379 O ILE A 370 SHEET 5 D 5 SER A 387 LEU A 396 -1 O SER A 387 N GLN A 384 SHEET 1 E 6 THR A 349 SER A 352 0 SHEET 2 E 6 GLN A 50 SER A 57 -1 O VAL A 56 N LEU A 350 SHEET 3 E 6 LEU A 324 ALA A 332 -1 O ARG A 325 N GLN A 55 SHEET 4 E 6 GLU A 335 LYS A 337 -1 O GLU A 335 N ALA A 332 SHEET 5 E 6 LEU A 324 ALA A 332 -1 O TYR A 330 N LYS A 337 SHEET 6 E 6 THR A 340 ILE A 343 -1 O VAL A 341 N ILE A 326 SHEET 1 F 8 LEU A 176 ILE A 177 0 SHEET 2 F 8 ILE A 223 ILE A 243 -1 N THR A 236 O LEU A 176 SHEET 3 F 8 ALA A 295 LEU A 320 -1 O ALA A 297 N ILE A 243 SHEET 4 F 8 ARG A 64 PRO A 66 -1 N LEU A 65 O THR A 319 SHEET 5 F 8 ALA A 295 LEU A 320 -1 O THR A 319 N LEU A 65 SHEET 6 F 8 TYR A 145 PRO A 152 -1 N LYS A 146 O THR A 314 SHEET 7 F 8 ALA A 295 LEU A 320 -1 O ASP A 310 N ARG A 151 SHEET 8 F 8 SER A 130 GLN A 131 -1 N SER A 130 O PHE A 318 SHEET 1 G 3 SER A 115 PRO A 116 0 SHEET 2 G 3 PHE A 86 GLN A 88 -1 O GLN A 88 N SER A 115 SHEET 3 G 3 ALA A 189 SER A 190 -1 N ALA A 189 O GLY A 87 SHEET 1 H 2 HIS A 136 ILE A 138 0 SHEET 2 H 2 ILE A 141 THR A 143 -1 O ILE A 141 N ILE A 138 SHEET 1 I 2 SER A 159 PRO A 163 0 SHEET 2 I 2 PRO A 170 THR A 173 -1 O GLY A 171 N THR A 161 SHEET 1 J 2 VAL A 197 PRO A 200 0 SHEET 2 J 2 VAL A 211 ILE A 215 -1 N ILE A 212 O GLU A 199 SHEET 1 K 3 VAL A 245 ALA A 249 0 SHEET 2 K 3 VAL A 263 THR A 267 1 O VAL A 263 N GLU A 246 SHEET 3 K 3 SER A 275 PRO A 276 -1 O SER A 275 N ARG A 266 SHEET 1 L 2 LYS A 511 ALA A 513 0 SHEET 2 L 2 GLU A 516 PHE A 517 -1 O GLU A 516 N ILE A 512 SSBOND 1 CYS A 254 CYS A 277 1555 1555 2.03 LINK OD1 ASP A 425 CA CA A 601 1555 1555 2.49 LINK O LYS A 426 CA CA A 601 1555 1555 2.44 LINK O SER A 462 CA CA A 601 1555 1555 2.34 LINK CA CA A 601 O HOH A 717 1555 1555 2.55 LINK CA CA A 601 O HOH A 718 1555 1555 2.45 LINK CA CA A 601 O HOH A 719 1555 1555 2.59 CISPEP 1 ASN A 126 PRO A 127 0 -0.25 CISPEP 2 PRO A 205 PRO A 206 0 -0.09 CISPEP 3 PRO A 208 PRO A 209 0 0.03 CISPEP 4 ASP A 250 PRO A 251 0 0.07 SITE 1 AC1 5 ASN A 185 GLY A 230 ASP A 455 ASP A 456 SITE 2 AC1 5 HOH A 757 SITE 1 AC2 2 ILE A 377 HOH A 610 SITE 1 AC3 3 LEU A 52 HIS A 53 HOH A 709 SITE 1 AC4 6 ASP A 425 LYS A 426 SER A 462 HOH A 717 SITE 2 AC4 6 HOH A 718 HOH A 719 CRYST1 138.200 46.500 136.500 90.00 90.00 90.00 P 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007326 0.00000