HEADER TRANSLATION 20-NOV-02 1N88 TITLE NMR STRUCTURE OF THE RIBOSOMAL PROTEIN L23 FROM THERMUS THERMOPHILUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L23; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS NMR SPECTROSCOPY, PROTEIN STRUCTURE, L23, RIBOSOME, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR A.OHMAN,A.RAK,M.DONTSOVA,M.B.GARBER,T.HARD REVDAT 4 29-MAY-24 1N88 1 REMARK REVDAT 3 23-FEB-22 1N88 1 REMARK REVDAT 2 24-FEB-09 1N88 1 VERSN REVDAT 1 10-JUN-03 1N88 0 JRNL AUTH A.OHMAN,A.RAK,M.DONTSOVA,M.B.GARBER,T.HARD JRNL TITL NMR STRUCTURE OF THE RIBOSOMAL PROTEIN L23 FROM THERMUS JRNL TITL 2 THERMOPHILUS. JRNL REF J.BIOMOL.NMR V. 26 131 2003 JRNL REFN ISSN 0925-2738 JRNL PMID 12766408 JRNL DOI 10.1023/A:1023502307069 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE RESTRAINTS: 1660 REMARK 3 DIHEDRAL ANGLE RESTRAINTS: 61 REMARK 4 REMARK 4 1N88 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017641. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : 0.2M LICL2 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8MM L23 U-15N,13C; 50MM REMARK 210 KH2PO4, PH=5.1, 200MM LICL2; REMARK 210 0.8MM L23 U-15N; 50MM KH2PO4, PH= REMARK 210 5.1, 200MM LICL2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; REMARK 210 CBCANH,CBCA(CO)NH,HNCO,HNCA,HN(CO)CA,C(CO)NH,HC(CO)NH,HCCH-COSY, REMARK 210 HCCH-TOCSY; 3D_15N-SEPARATED_NOESY; 2D 15N-HSQC,3D 15N-DIPSI- REMARK 210 HSQC; 2D 1H-DQF-COSY, 2D 1H-CLEAN-TOCSY, 2D 1H-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 2.1, ANSIG REMARK 210 1.02, AQUA 3.2, TALOS REMARK 210 1999.019.15.47, MOLMOL 2K.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : ACCEPT.INP (XPLOR), LOW ENERGY REMARK 210 AND GOOD RAMACHANDRAN BEHAVIOUR. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 57 H LYS A 78 1.46 REMARK 500 O ASN A 55 H ILE A 80 1.48 REMARK 500 H VAL A 59 O ARG A 76 1.49 REMARK 500 O SER A 14 H TYR A 18 1.49 REMARK 500 H ASN A 55 O ILE A 80 1.53 REMARK 500 H VAL A 52 O GLN A 82 1.56 REMARK 500 O ALA A 17 H PHE A 21 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 -104.87 -108.64 REMARK 500 1 TYR A 5 -139.92 -52.83 REMARK 500 1 VAL A 7 -109.11 -51.41 REMARK 500 1 LEU A 9 -93.60 -75.42 REMARK 500 1 ALA A 22 -38.26 -38.31 REMARK 500 1 LYS A 33 -34.18 179.30 REMARK 500 1 ALA A 34 92.49 -44.27 REMARK 500 1 VAL A 49 -163.94 -116.88 REMARK 500 1 LYS A 53 119.11 169.68 REMARK 500 1 LYS A 62 -79.43 -45.14 REMARK 500 1 LYS A 64 32.94 38.56 REMARK 500 1 ARG A 65 -49.47 -160.56 REMARK 500 1 LEU A 66 104.45 53.56 REMARK 500 1 ARG A 68 -173.07 -51.80 REMARK 500 1 TYR A 69 102.76 -42.26 REMARK 500 1 LEU A 70 40.36 -157.31 REMARK 500 1 LYS A 72 142.10 65.84 REMARK 500 1 ARG A 73 103.91 -42.59 REMARK 500 1 PRO A 74 -166.48 -77.16 REMARK 500 1 ALA A 84 178.79 -57.34 REMARK 500 1 LYS A 88 105.55 179.68 REMARK 500 2 LYS A 2 76.71 -64.76 REMARK 500 2 THR A 3 -97.41 -120.59 REMARK 500 2 TYR A 5 -28.30 -34.04 REMARK 500 2 ASP A 6 -51.27 -164.00 REMARK 500 2 LEU A 9 -97.47 -79.04 REMARK 500 2 TYR A 18 -38.62 -139.18 REMARK 500 2 LYS A 33 -33.88 179.73 REMARK 500 2 ALA A 34 95.46 -42.42 REMARK 500 2 THR A 35 134.27 -39.39 REMARK 500 2 ALA A 46 -67.44 -104.23 REMARK 500 2 VAL A 49 -158.98 -123.56 REMARK 500 2 LYS A 53 119.85 169.12 REMARK 500 2 LEU A 66 100.10 -41.79 REMARK 500 2 TYR A 69 113.65 50.72 REMARK 500 2 LYS A 72 111.52 56.77 REMARK 500 2 ARG A 73 77.27 44.16 REMARK 500 2 PRO A 74 -165.01 -77.40 REMARK 500 2 ALA A 84 179.03 -49.16 REMARK 500 2 LYS A 88 108.56 179.43 REMARK 500 2 ILE A 89 91.62 -51.11 REMARK 500 3 THR A 3 -105.71 -108.87 REMARK 500 3 TYR A 5 -140.46 -52.54 REMARK 500 3 ASP A 6 -58.43 -29.87 REMARK 500 3 VAL A 7 -109.49 -52.71 REMARK 500 3 LEU A 9 -88.22 -92.06 REMARK 500 3 LYS A 33 -33.65 179.48 REMARK 500 3 ALA A 34 93.61 -42.36 REMARK 500 3 VAL A 49 -162.36 -115.29 REMARK 500 3 LYS A 53 123.40 -173.15 REMARK 500 REMARK 500 THIS ENTRY HAS 532 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 60 0.31 SIDE CHAIN REMARK 500 1 ARG A 65 0.24 SIDE CHAIN REMARK 500 1 ARG A 68 0.20 SIDE CHAIN REMARK 500 1 ARG A 76 0.31 SIDE CHAIN REMARK 500 2 ARG A 60 0.32 SIDE CHAIN REMARK 500 2 ARG A 65 0.29 SIDE CHAIN REMARK 500 2 ARG A 68 0.21 SIDE CHAIN REMARK 500 2 ARG A 73 0.32 SIDE CHAIN REMARK 500 2 ARG A 76 0.24 SIDE CHAIN REMARK 500 3 ARG A 60 0.31 SIDE CHAIN REMARK 500 3 ARG A 65 0.18 SIDE CHAIN REMARK 500 3 ARG A 68 0.25 SIDE CHAIN REMARK 500 3 ARG A 73 0.28 SIDE CHAIN REMARK 500 3 ARG A 76 0.15 SIDE CHAIN REMARK 500 4 ARG A 60 0.18 SIDE CHAIN REMARK 500 4 ARG A 65 0.26 SIDE CHAIN REMARK 500 4 ARG A 68 0.09 SIDE CHAIN REMARK 500 4 ARG A 73 0.29 SIDE CHAIN REMARK 500 4 ARG A 76 0.32 SIDE CHAIN REMARK 500 5 ARG A 60 0.21 SIDE CHAIN REMARK 500 5 ARG A 65 0.23 SIDE CHAIN REMARK 500 5 ARG A 68 0.27 SIDE CHAIN REMARK 500 5 ARG A 73 0.08 SIDE CHAIN REMARK 500 5 ARG A 76 0.26 SIDE CHAIN REMARK 500 6 ARG A 60 0.29 SIDE CHAIN REMARK 500 6 ARG A 65 0.20 SIDE CHAIN REMARK 500 6 ARG A 68 0.16 SIDE CHAIN REMARK 500 6 ARG A 73 0.32 SIDE CHAIN REMARK 500 6 ARG A 76 0.28 SIDE CHAIN REMARK 500 7 ARG A 60 0.22 SIDE CHAIN REMARK 500 7 ARG A 65 0.26 SIDE CHAIN REMARK 500 7 ARG A 68 0.28 SIDE CHAIN REMARK 500 7 ARG A 73 0.20 SIDE CHAIN REMARK 500 7 ARG A 76 0.28 SIDE CHAIN REMARK 500 8 ARG A 60 0.23 SIDE CHAIN REMARK 500 8 ARG A 65 0.26 SIDE CHAIN REMARK 500 8 ARG A 68 0.30 SIDE CHAIN REMARK 500 8 ARG A 73 0.32 SIDE CHAIN REMARK 500 8 ARG A 76 0.29 SIDE CHAIN REMARK 500 9 ARG A 60 0.17 SIDE CHAIN REMARK 500 9 ARG A 65 0.32 SIDE CHAIN REMARK 500 9 ARG A 68 0.10 SIDE CHAIN REMARK 500 9 ARG A 73 0.31 SIDE CHAIN REMARK 500 9 ARG A 76 0.29 SIDE CHAIN REMARK 500 10 ARG A 60 0.24 SIDE CHAIN REMARK 500 10 ARG A 65 0.23 SIDE CHAIN REMARK 500 10 ARG A 68 0.17 SIDE CHAIN REMARK 500 10 ARG A 73 0.30 SIDE CHAIN REMARK 500 10 ARG A 76 0.24 SIDE CHAIN REMARK 500 11 ARG A 60 0.28 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 140 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6700 RELATED DB: BMRB REMARK 900 BMRB ENTRY FOR PRESENT STRUCTURE. DBREF 1N88 A 1 96 UNP Q9RA57 RL23_THETH 1 96 SEQRES 1 A 96 MET LYS THR ALA TYR ASP VAL ILE LEU ALA PRO VAL LEU SEQRES 2 A 96 SER GLU LYS ALA TYR ALA GLY PHE ALA GLU GLY LYS TYR SEQRES 3 A 96 THR PHE TRP VAL HIS PRO LYS ALA THR LYS THR GLU ILE SEQRES 4 A 96 LYS ASN ALA VAL GLU THR ALA PHE LYS VAL LYS VAL VAL SEQRES 5 A 96 LYS VAL ASN THR LEU HIS VAL ARG GLY LYS LYS LYS ARG SEQRES 6 A 96 LEU GLY ARG TYR LEU GLY LYS ARG PRO ASP ARG LYS LYS SEQRES 7 A 96 ALA ILE VAL GLN VAL ALA PRO GLY GLN LYS ILE GLU ALA SEQRES 8 A 96 LEU GLU GLY LEU ILE HELIX 1 1 SER A 14 ALA A 22 1 9 HELIX 2 2 THR A 35 PHE A 47 1 13 HELIX 3 3 ILE A 89 GLY A 94 1 6 SHEET 1 A 4 ILE A 8 PRO A 11 0 SHEET 2 A 4 LYS A 25 VAL A 30 -1 O TRP A 29 N LEU A 9 SHEET 3 A 4 ARG A 76 VAL A 83 -1 O LYS A 77 N VAL A 30 SHEET 4 A 4 VAL A 51 VAL A 59 -1 N VAL A 52 O GLN A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1