HEADER HYDROLASE 25-NOV-02 1N9K TITLE CRYSTAL STRUCTURE OF THE BROMIDE ADDUCT OF APHA CLASS B ACID TITLE 2 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 2.2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS B ACID PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APHA CLASS B ACID PHOSPHATASE/PHOSPHOTRANSFERASE; COMPND 5 EC: 3.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: APHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS B ACID PHOSPHATASE, DDDD ACID PHOSPHATASE, METALLO-ENZYME KEYWDS 2 BROMIDE MAD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CALDERONE,C.FORLEO,M.BENVENUTI,G.M.ROSSOLINI,M.C.THALLER,S.MANGANI REVDAT 5 14-FEB-24 1N9K 1 REMARK LINK REVDAT 4 11-OCT-17 1N9K 1 REMARK REVDAT 3 13-JUL-11 1N9K 1 VERSN REVDAT 2 24-FEB-09 1N9K 1 VERSN REVDAT 1 03-FEB-04 1N9K 0 JRNL AUTH V.CALDERONE,C.FORLEO,M.BENVENUTI,M.C.THALLER,G.M.ROSSOLINI, JRNL AUTH 2 S.MANGANI JRNL TITL THE FIRST STRUCTURE OF A BACTERIAL CLASS B ACID PHOSPHATASE JRNL TITL 2 REVEALS FURTHER STRUCTURAL HETEROGENEITY AMONG PHOSPHATASES JRNL TITL 3 OF THE HALOACID DEHALOGENASE FOLD. JRNL REF J.MOL.BIOL. V. 335 761 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14687572 JRNL DOI 10.1016/J.JMB.2003.10.050 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.THALLER,S.SCHIPPA,A.BONCI,S.CRESTI,G.M.ROSSOLINI REMARK 1 TITL IDENTIFICATION OF THE GENE (APHA) ENCODING THE CLASS B ACID REMARK 1 TITL 2 PHOSPHATASE/PHOSPHOTRANSFERASE OF ESCHERICHIA COLI MG1655 REMARK 1 TITL 3 AND CHARACTERIZATION OF ITS PRODUCT REMARK 1 REF FEMS MICROBIOL.LETT. V. 146 191 1997 REMARK 1 REFN ISSN 0378-1097 REMARK 1 DOI 10.1016/S0378-1097(96)00474-0 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 30818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.359 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3372 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4584 ; 1.901 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 6.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2640 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1629 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 91 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2088 ; 1.186 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3384 ; 2.031 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1284 ; 3.392 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1200 ; 5.264 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91957, 0.9204, 0.88561 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : TORODIAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.170 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APHA 6MG/ML, 50 MM NA ACETATE, 25% PEG REMARK 280 6000 , PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 280 THE CRYSTALS OF THE NATIVE ENZYME (CONTAINING MG2+ OR ZN2+) HAVE REMARK 280 BEEN SOAKED IN 1 M SOLUTION OF NABR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.74950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.30800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.74950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.30800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1406 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1379 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD ARG A 14 O HOH A 1372 2.11 REMARK 500 O HOH B 1296 O HOH B 1352 2.11 REMARK 500 O HOH B 1254 O HOH B 1382 2.14 REMARK 500 OD1 ASP A 177 O HOH A 1405 2.14 REMARK 500 O HOH A 1265 O HOH A 1416 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 118 O HOH A 1375 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 86 CD GLU B 86 OE1 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 181 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 181 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP B 44 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 58 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 58 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 181 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 38 135.98 -37.21 REMARK 500 SER B 64 65.69 -152.91 REMARK 500 ALA B 134 -38.84 -38.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1213 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD2 REMARK 620 2 ASP A 46 O 90.3 REMARK 620 3 ASP A 167 OD1 94.0 92.9 REMARK 620 4 HOH A1277 O 88.2 97.1 169.7 REMARK 620 5 HOH A1296 O 174.5 85.0 89.0 89.7 REMARK 620 6 HOH A1395 O 86.5 176.2 85.3 84.8 98.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1214 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD2 REMARK 620 2 ASP B 46 O 91.4 REMARK 620 3 ASP B 167 OD1 87.5 89.9 REMARK 620 4 HOH B1293 O 87.4 99.1 169.7 REMARK 620 5 HOH B1380 O 84.2 173.8 85.5 85.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 227 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N8N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AU3+ COMPLEX OF APHA CLASS B ACID REMARK 900 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 1.7 A RESOLUTION DBREF 1N9K A 1 212 UNP P32697 APHA_ECOLI 26 237 DBREF 1N9K B 1 212 UNP P32697 APHA_ECOLI 26 237 SEQRES 1 A 212 SER SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA SEQRES 2 A 212 ARG LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL SEQRES 3 A 212 ALA GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET SEQRES 4 A 212 ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SEQRES 5 A 212 SER PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO SEQRES 6 A 212 GLU SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU SEQRES 7 A 212 LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS SEQRES 8 A 212 GLU VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG SEQRES 9 A 212 GLY ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR SEQRES 10 A 212 LYS THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE SEQRES 11 A 212 HIS ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA SEQRES 12 A 212 GLY ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU SEQRES 13 A 212 GLN ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP SEQRES 14 A 212 ASN ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY SEQRES 15 A 212 ILE ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO SEQRES 16 A 212 LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL SEQRES 17 A 212 ASN SER GLU TYR SEQRES 1 B 212 SER SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA SEQRES 2 B 212 ARG LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL SEQRES 3 B 212 ALA GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET SEQRES 4 B 212 ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SEQRES 5 B 212 SER PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO SEQRES 6 B 212 GLU SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU SEQRES 7 B 212 LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS SEQRES 8 B 212 GLU VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG SEQRES 9 B 212 GLY ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR SEQRES 10 B 212 LYS THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE SEQRES 11 B 212 HIS ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA SEQRES 12 B 212 GLY ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU SEQRES 13 B 212 GLN ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP SEQRES 14 B 212 ASN ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY SEQRES 15 B 212 ILE ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO SEQRES 16 B 212 LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL SEQRES 17 B 212 ASN SER GLU TYR HET MG A1213 1 HET BR A 213 1 HET BR A 214 1 HET BR A 215 1 HET BR A 216 1 HET BR A 217 1 HET BR A 218 1 HET BR A 219 1 HET MG B1214 1 HET BR B 220 1 HET BR B 221 1 HET BR B 222 1 HET BR B 223 1 HET BR B 224 1 HET BR B 225 1 HET BR B 226 1 HET BR B 227 1 HETNAM MG MAGNESIUM ION HETNAM BR BROMIDE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 BR 15(BR 1-) FORMUL 20 HOH *380(H2 O) HELIX 1 1 ASN A 11 GLU A 17 1 7 HELIX 2 2 SER A 25 LEU A 33 1 9 HELIX 3 3 SER A 52 SER A 64 1 13 HELIX 4 4 GLU A 68 LYS A 72 5 5 HELIX 5 5 ASN A 73 ASN A 82 1 10 HELIX 6 6 GLY A 83 SER A 88 5 6 HELIX 7 7 LYS A 91 ARG A 104 1 14 HELIX 8 8 THR A 121 PHE A 130 1 10 HELIX 9 9 THR A 151 LYS A 159 1 9 HELIX 10 10 SER A 168 VAL A 178 1 11 HELIX 11 11 ASN B 11 GLU B 17 1 7 HELIX 12 12 SER B 25 LEU B 33 1 9 HELIX 13 13 SER B 52 SER B 64 1 13 HELIX 14 14 GLU B 68 LYS B 72 5 5 HELIX 15 15 ASN B 73 ASN B 82 1 10 HELIX 16 16 GLY B 83 SER B 88 5 6 HELIX 17 17 LYS B 91 ARG B 104 1 14 HELIX 18 18 THR B 121 PHE B 130 1 10 HELIX 19 19 THR B 151 ASN B 160 1 10 HELIX 20 20 SER B 168 VAL B 178 1 11 SHEET 1 A 7 HIS A 22 VAL A 24 0 SHEET 2 A 7 GLU A 205 ILE A 207 1 O VAL A 206 N HIS A 22 SHEET 3 A 7 ARG A 181 ARG A 184 1 N ARG A 184 O ILE A 207 SHEET 4 A 7 ILE A 161 GLY A 166 1 N PHE A 164 O ILE A 183 SHEET 5 A 7 ALA A 40 PHE A 43 1 N GLY A 42 O ILE A 163 SHEET 6 A 7 ALA A 107 THR A 112 1 O ALA A 107 N VAL A 41 SHEET 7 A 7 ILE A 141 PHE A 142 1 O ILE A 141 N THR A 112 SHEET 1 B 2 LEU A 50 PHE A 51 0 SHEET 2 B 2 ILE A 89 PRO A 90 -1 O ILE A 89 N PHE A 51 SHEET 1 C 7 HIS B 22 VAL B 24 0 SHEET 2 C 7 GLU B 205 ILE B 207 1 O VAL B 206 N HIS B 22 SHEET 3 C 7 ARG B 181 ARG B 184 1 N ARG B 184 O GLU B 205 SHEET 4 C 7 ILE B 161 GLY B 166 1 N PHE B 164 O ILE B 183 SHEET 5 C 7 ALA B 40 PHE B 43 1 N ALA B 40 O ARG B 162 SHEET 6 C 7 ALA B 107 THR B 112 1 O ALA B 107 N VAL B 41 SHEET 7 C 7 ILE B 141 PHE B 142 1 O ILE B 141 N THR B 112 SHEET 1 D 2 LEU B 50 PHE B 51 0 SHEET 2 D 2 ILE B 89 PRO B 90 -1 O ILE B 89 N PHE B 51 LINK OD2 ASP A 44 MG MG A1213 1555 1555 2.06 LINK O ASP A 46 MG MG A1213 1555 1555 2.09 LINK OD1 ASP A 167 MG MG A1213 1555 1555 1.95 LINK MG MG A1213 O HOH A1277 1555 1555 2.03 LINK MG MG A1213 O HOH A1296 1555 1555 2.03 LINK MG MG A1213 O HOH A1395 1555 1555 2.05 LINK OD2 ASP B 44 MG MG B1214 1555 1555 1.97 LINK O ASP B 46 MG MG B1214 1555 1555 2.12 LINK OD1 ASP B 167 MG MG B1214 1555 1555 2.07 LINK MG MG B1214 O HOH B1293 1555 1555 2.04 LINK MG MG B1214 O HOH B1380 1555 1555 2.04 CISPEP 1 LYS A 194 PRO A 195 0 -2.25 CISPEP 2 LYS B 194 PRO B 195 0 -0.47 SITE 1 AC1 6 ASP A 44 ASP A 46 ASP A 167 HOH A1277 SITE 2 AC1 6 HOH A1296 HOH A1395 SITE 1 AC2 5 ASP B 44 ASP B 46 ASP B 167 HOH B1293 SITE 2 AC2 5 HOH B1380 SITE 1 AC3 3 LEU A 196 HOH A1254 HOH B1281 SITE 1 AC4 2 THR A 151 LYS A 152 SITE 1 AC5 3 PHE A 63 TYR A 70 ASN A 73 SITE 1 AC6 2 ASP A 169 HOH A1269 SITE 1 AC7 3 SER A 64 PRO A 65 GLU A 66 SITE 1 AC8 3 GLN A 28 ASN A 31 HOH A1324 SITE 1 AC9 1 GLN A 96 SITE 1 BC1 1 GLN B 96 SITE 1 BC2 2 LEU B 196 HOH B1243 SITE 1 BC3 4 GLY B 144 THR B 151 LYS B 152 HOH B1283 SITE 1 BC4 3 ASP B 169 PRO B 197 HOH B1278 SITE 1 BC5 3 PHE B 63 TYR B 70 ASN B 73 SITE 1 BC6 3 SER B 64 PRO B 65 GLU B 66 SITE 1 BC7 4 PRO B 116 ALA B 134 PHE B 142 GLN B 149 SITE 1 BC8 3 GLY B 83 TRP B 84 HOH B1332 CRYST1 49.499 92.616 138.247 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007233 0.00000