HEADER    DNA                                     27-NOV-02   1NAJ              
TITLE     HIGH RESOLUTION NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS  
TITLE    2 DILUTE LIQUID CRYSTALLINE PHASE                                      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3';              
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES                                                       
KEYWDS    DICKERSON DODECAMER, DNA                                              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    5                                                                     
AUTHOR    Z.WU,F.DELAGLIO,N.TJANDRA,V.ZHURKIN,A.BAX                             
REVDAT   4   22-MAY-24 1NAJ    1       REMARK                                   
REVDAT   3   23-FEB-22 1NAJ    1       REMARK                                   
REVDAT   2   24-FEB-09 1NAJ    1       VERSN                                    
REVDAT   1   08-JUL-03 1NAJ    0                                                
JRNL        AUTH   Z.WU,F.DELAGLIO,N.TJANDRA,V.B.ZHURKIN,A.BAX                  
JRNL        TITL   OVERALL STRUCTURE AND SUGAR DYNAMICS OF A DNA DODECAMER FROM 
JRNL        TITL 2 HOMO- AND HETERONUCLEAR DIPOLAR COUPLINGS AND (31)P CHEMICAL 
JRNL        TITL 3 SHIFT ANISOTROPY.                                            
JRNL        REF    J.BIOMOL.NMR                  V.  26   297 2003              
JRNL        REFN                   ISSN 0925-2738                               
JRNL        PMID   12815257                                                     
JRNL        DOI    10.1023/A:1024047103398                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE 1.7 REV 1999.039.11.31, X-PLOR 3.841         
REMARK   3   AUTHORS     : DELAGLIO, FRANK (NMRPIPE), BRUNGER (X-PLOR)          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE STRUCTURE IS BASED ON A TOTAL OF 162 NOE, 32 HYDROGEN BOND,     
REMARK   3  AND 24 DIHEDRAL RESTRAINTS; AS WELL AS 262 CH AND 16 NH ONE-BOND    
REMARK   3  DIPOLAR COUPLING RESTRAINTS, 200 APPROXIMATE PROTON-PROTON DIPOLAR  
REMARK   3  COUPLINGS, 300 QUANTITATIVE PROTON-PROTON DIPOLAR RESTRAINTS, 22    
REMARK   3  31P-1H                                                              
REMARK   3  DIPOLAR COUPLINGS, AND 22 31P CHEMICAL SHIFT ANISOTROPY RESTRAINTS. 
REMARK   3                                                                      
REMARK   3  THE COORDINATE OF THE ALIGNMENT TENSOR IS DEFINED BY MOLECULE 500   
REMARK   3  AND 501.                                                            
REMARK   4                                                                      
REMARK   4 1NAJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-02.                  
REMARK 100 THE DEPOSITION ID IS D_1000017718.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 308                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 40MM                               
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 0.5 MM UNLABELED DUPLEX DNA,       
REMARK 210                                   40MM SODIUM PHOSPHATE, PH 7.0;     
REMARK 210                                   0.5 MM U-13C/15N DUPLEX DNA,       
REMARK 210                                   40MM SODIUM PHOSPHATE, PH 7.0      
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : H-31P-HSQC, HP-CTNOESY-DIF,        
REMARK 210  COSY; COSY,2D NOESY,13C-HSQC-J-MODULATED,13C-HSQC-F1-COUPLED,       
REMARK 210  15N-HSQC-F1-COUPLED                                                 
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 800 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DMX; AVANCE                        
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR VERSION 2.4 AND 2.6,       
REMARK 210                                   COSYVIEW                           
REMARK 210   METHOD USED                   : SIMULATED ANNEALING, MOLECULAR     
REMARK 210                                   DYNAMICS                           
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 20                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 5                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   H21   DG A     2     O2    DC B    23              1.56            
REMARK 500   O2    DC A    11     H21   DG B    14              1.57            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1  DC A   1   C4' -  C3' -  C2' ANGL. DEV. =   6.3 DEGREES          
REMARK 500  1  DG A   2   C4' -  C3' -  C2' ANGL. DEV. =   5.7 DEGREES          
REMARK 500  1  DC A   3   C4' -  C3' -  C2' ANGL. DEV. =   6.6 DEGREES          
REMARK 500  1  DA A   6   C4' -  C3' -  C2' ANGL. DEV. =   5.8 DEGREES          
REMARK 500  1  DT A   7   C4' -  C3' -  C2' ANGL. DEV. =   6.0 DEGREES          
REMARK 500  1  DT A   7   C6  -  C5  -  C7  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  1  DT A   8   C4' -  C3' -  C2' ANGL. DEV. =   6.5 DEGREES          
REMARK 500  1  DC A   9   C4' -  C3' -  C2' ANGL. DEV. =   6.2 DEGREES          
REMARK 500  1  DC A  11   C4' -  C3' -  C2' ANGL. DEV. =   6.6 DEGREES          
REMARK 500  1  DG A  12   C4' -  C3' -  C2' ANGL. DEV. =   6.7 DEGREES          
REMARK 500  1  DC B  13   C4' -  C3' -  C2' ANGL. DEV. =   7.2 DEGREES          
REMARK 500  1  DG B  14   C4' -  C3' -  C2' ANGL. DEV. =   5.6 DEGREES          
REMARK 500  1  DC B  15   C4' -  C3' -  C2' ANGL. DEV. =   6.7 DEGREES          
REMARK 500  1  DG B  16   C4' -  C3' -  C2' ANGL. DEV. =   5.5 DEGREES          
REMARK 500  1  DA B  18   C4' -  C3' -  C2' ANGL. DEV. =   5.9 DEGREES          
REMARK 500  1  DT B  19   C4' -  C3' -  C2' ANGL. DEV. =   6.0 DEGREES          
REMARK 500  1  DT B  19   C6  -  C5  -  C7  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  1  DT B  20   C4' -  C3' -  C2' ANGL. DEV. =   6.4 DEGREES          
REMARK 500  1  DC B  21   C4' -  C3' -  C2' ANGL. DEV. =   6.2 DEGREES          
REMARK 500  1  DC B  23   C4' -  C3' -  C2' ANGL. DEV. =   6.7 DEGREES          
REMARK 500  1  DG B  24   C4' -  C3' -  C2' ANGL. DEV. =   6.6 DEGREES          
REMARK 500  2  DC A   1   C4' -  C3' -  C2' ANGL. DEV. =   7.1 DEGREES          
REMARK 500  2  DG A   2   C4' -  C3' -  C2' ANGL. DEV. =   5.6 DEGREES          
REMARK 500  2  DC A   3   C4' -  C3' -  C2' ANGL. DEV. =   6.7 DEGREES          
REMARK 500  2  DG A   4   C4' -  C3' -  C2' ANGL. DEV. =   5.5 DEGREES          
REMARK 500  2  DA A   6   C4' -  C3' -  C2' ANGL. DEV. =   6.1 DEGREES          
REMARK 500  2  DT A   7   C4' -  C3' -  C2' ANGL. DEV. =   6.2 DEGREES          
REMARK 500  2  DT A   7   C6  -  C5  -  C7  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  2  DT A   8   C4' -  C3' -  C2' ANGL. DEV. =   6.4 DEGREES          
REMARK 500  2  DT A   8   C6  -  C5  -  C7  ANGL. DEV. =  -3.6 DEGREES          
REMARK 500  2  DC A   9   C4' -  C3' -  C2' ANGL. DEV. =   6.0 DEGREES          
REMARK 500  2  DG A  10   C4' -  C3' -  C2' ANGL. DEV. =   5.4 DEGREES          
REMARK 500  2  DC A  11   C4' -  C3' -  C2' ANGL. DEV. =   6.8 DEGREES          
REMARK 500  2  DG A  12   C4' -  C3' -  C2' ANGL. DEV. =   6.7 DEGREES          
REMARK 500  2  DC B  13   C4' -  C3' -  C2' ANGL. DEV. =   7.1 DEGREES          
REMARK 500  2  DG B  14   C4' -  C3' -  C2' ANGL. DEV. =   5.6 DEGREES          
REMARK 500  2  DC B  15   C4' -  C3' -  C2' ANGL. DEV. =   6.7 DEGREES          
REMARK 500  2  DG B  16   C4' -  C3' -  C2' ANGL. DEV. =   5.5 DEGREES          
REMARK 500  2  DA B  18   C4' -  C3' -  C2' ANGL. DEV. =   6.0 DEGREES          
REMARK 500  2  DT B  19   C4' -  C3' -  C2' ANGL. DEV. =   6.3 DEGREES          
REMARK 500  2  DT B  19   C6  -  C5  -  C7  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  2  DT B  20   C4' -  C3' -  C2' ANGL. DEV. =   6.4 DEGREES          
REMARK 500  2  DT B  20   C6  -  C5  -  C7  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  2  DC B  21   C4' -  C3' -  C2' ANGL. DEV. =   6.0 DEGREES          
REMARK 500  2  DG B  22   C4' -  C3' -  C2' ANGL. DEV. =   5.4 DEGREES          
REMARK 500  2  DC B  23   C4' -  C3' -  C2' ANGL. DEV. =   6.9 DEGREES          
REMARK 500  2  DG B  24   C4' -  C3' -  C2' ANGL. DEV. =   6.5 DEGREES          
REMARK 500  3  DC A   1   C4' -  C3' -  C2' ANGL. DEV. =   6.9 DEGREES          
REMARK 500  3  DG A   2   C4' -  C3' -  C2' ANGL. DEV. =   5.4 DEGREES          
REMARK 500  3  DC A   3   C4' -  C3' -  C2' ANGL. DEV. =   6.5 DEGREES          
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     108 ANGLE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1BNA   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 355D   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 1DUF   RELATED DB: PDB                                   
DBREF  1NAJ A    1    12  PDB    1NAJ     1NAJ             1     12             
DBREF  1NAJ B   13    24  PDB    1NAJ     1NAJ            13     24             
SEQRES   1 A   12   DC  DG  DC  DG  DA  DA  DT  DT  DC  DG  DC  DG              
SEQRES   1 B   12   DC  DG  DC  DG  DA  DA  DT  DT  DC  DG  DC  DG              
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1