HEADER ANTIBIOTIC 01-DEC-02 1NB1 TITLE HIGH RESOLUTION SOLUTION STRUCTURE OF KALATA B1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALATA B1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-29 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLDENLANDIA AFFINIS; SOURCE 3 ORGANISM_TAXID: 60225 KEYWDS CYCLOTIDE, CYCLIC BACKBONE, CYSTINE KNOT, CCK, INSECTICIDAL, KEYWDS 2 ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.J.ROSENGREN,N.L.DALY,M.R.PLAN,C.WAINE,D.J.CRAIK REVDAT 4 23-FEB-22 1NB1 1 REMARK REVDAT 3 24-FEB-09 1NB1 1 VERSN REVDAT 2 08-MAR-05 1NB1 1 REMARK REVDAT 1 18-MAR-03 1NB1 0 JRNL AUTH K.J.ROSENGREN,N.L.DALY,M.R.PLAN,C.WAINE,D.J.CRAIK JRNL TITL TWISTS, KNOTS, AND RINGS IN PROTEINS. STRUCTURAL DEFINITION JRNL TITL 2 OF THE CYCLOTIDE FRAMEWORK JRNL REF J.BIOL.CHEM. V. 278 8606 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12482868 JRNL DOI 10.1074/JBC.M211147200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER A.T., ADAMS P.D., CLORE REMARK 3 G.M., DELANO W.L., GROS P., GROSSE-KUNSTLEVE R.W., REMARK 3 JIANG J.S., KUSZEWSKI J., NILGES M., PANNU N.S., REMARK 3 READ R.J., RICE L.M., SIMONSON T. AND WARREN G.L. REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NB1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017729. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5MM OF PEPTIDE IN 0.5ML; 5MM OF REMARK 210 PEPTIDE IN 0.5ML REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY; E REMARK 210 -COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX; ARX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.7, DYANA 1.5 REMARK 210 METHOD USED : STRUCTURES WERE CALCULATED USING REMARK 210 TORSION ANGLE DYNAMICS AND REMARK 210 REFINED IN EXPLICIT SOLVENT REMARK 210 USING CARTESIAN DYNAMICS AND REMARK 210 POWELL RESTRAINED MINIMISATION. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D NMR REMARK 210 TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N CYS A 1 C VAL A 29 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 19 129.64 -28.72 REMARK 500 2 TRP A 19 129.37 -28.07 REMARK 500 3 TRP A 19 129.32 -27.99 REMARK 500 4 TRP A 19 129.54 -28.54 REMARK 500 5 TRP A 19 129.98 -28.65 REMARK 500 6 TRP A 19 129.57 -28.36 REMARK 500 7 TRP A 19 129.68 -28.53 REMARK 500 8 TRP A 19 129.57 -28.29 REMARK 500 9 TRP A 19 129.64 -27.94 REMARK 500 9 ASN A 25 29.92 48.03 REMARK 500 10 TRP A 19 129.60 -28.02 REMARK 500 10 PRO A 28 105.88 -58.07 REMARK 500 11 TRP A 19 129.48 -28.45 REMARK 500 11 PRO A 28 105.91 -59.22 REMARK 500 12 TRP A 19 129.45 -28.21 REMARK 500 13 TRP A 19 129.45 -28.11 REMARK 500 14 TRP A 19 129.65 -28.32 REMARK 500 15 TRP A 19 129.39 -27.94 REMARK 500 16 TRP A 19 129.60 -28.14 REMARK 500 16 ASN A 25 28.83 49.36 REMARK 500 17 TRP A 19 129.44 -28.16 REMARK 500 18 TRP A 19 129.53 -28.24 REMARK 500 19 TRP A 19 129.52 -28.30 REMARK 500 20 TRP A 19 129.26 -27.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KAL RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF KALATA B1 DBREF 1NB1 A 1 28 UNP P56254 KAB1_OLDAF 93 120 SEQRES 1 A 29 CYS GLY GLU THR CYS VAL GLY GLY THR CYS ASN THR PRO SEQRES 2 A 29 GLY CYS THR CYS SER TRP PRO VAL CYS THR ARG ASN GLY SEQRES 3 A 29 LEU PRO VAL SHEET 1 A 2 CYS A 15 SER A 18 0 SHEET 2 A 2 VAL A 21 ARG A 24 -1 O THR A 23 N THR A 16 SSBOND 1 CYS A 1 CYS A 15 1555 1555 2.02 SSBOND 2 CYS A 5 CYS A 17 1555 1555 2.04 SSBOND 3 CYS A 10 CYS A 22 1555 1555 2.03 CISPEP 1 TRP A 19 PRO A 20 1 0.39 CISPEP 2 TRP A 19 PRO A 20 2 0.27 CISPEP 3 TRP A 19 PRO A 20 3 0.32 CISPEP 4 TRP A 19 PRO A 20 4 0.42 CISPEP 5 TRP A 19 PRO A 20 5 0.30 CISPEP 6 TRP A 19 PRO A 20 6 0.32 CISPEP 7 TRP A 19 PRO A 20 7 0.36 CISPEP 8 TRP A 19 PRO A 20 8 0.38 CISPEP 9 TRP A 19 PRO A 20 9 0.32 CISPEP 10 TRP A 19 PRO A 20 10 0.36 CISPEP 11 TRP A 19 PRO A 20 11 0.42 CISPEP 12 TRP A 19 PRO A 20 12 0.36 CISPEP 13 TRP A 19 PRO A 20 13 0.32 CISPEP 14 TRP A 19 PRO A 20 14 0.31 CISPEP 15 TRP A 19 PRO A 20 15 0.47 CISPEP 16 TRP A 19 PRO A 20 16 0.31 CISPEP 17 TRP A 19 PRO A 20 17 0.33 CISPEP 18 TRP A 19 PRO A 20 18 0.43 CISPEP 19 TRP A 19 PRO A 20 19 0.34 CISPEP 20 TRP A 19 PRO A 20 20 0.37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1