HEADER    IMMUNE SYSTEM                           05-DEC-02   1NCW              
TITLE     CATIONIC CYCLIZATION ANTIBODY 4C6 IN COMPLEX WITH BENZOIC ACID        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: IMMUNOGLOBULIN IGG2A;                                      
COMPND   3 CHAIN: L;                                                            
COMPND   4 FRAGMENT: ANTIBODY FAB FRAGMENT 4C6, LIGHT CHAIN;                    
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: IMMUNOGLOBULIN IGG2A;                                      
COMPND   7 CHAIN: H;                                                            
COMPND   8 FRAGMENT: ANTIBODY FAB FRAGMENT 4C6, HEAVY CHAIN                     
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 STRAIN: 129G1X+;                                                     
SOURCE   6 OTHER_DETAILS: PURIFIED FROM ASCITIC FLUID;                          
SOURCE   7 MOL_ID: 2;                                                           
SOURCE   8 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   9 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE  10 ORGANISM_TAXID: 10090;                                               
SOURCE  11 STRAIN: 129G1X+;                                                     
SOURCE  12 OTHER_DETAILS: PURIFIED FROM ASCITIC FLUID                           
KEYWDS    IMMUNOGLOBULIN, CATALYTIC ANTIBODY, CATIONIC CYCLIZATION REACTION,    
KEYWDS   2 IMMUNE SYSTEM                                                        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    X.ZHU,I.A.WILSON                                                      
REVDAT   5   30-OCT-24 1NCW    1       REMARK                                   
REVDAT   4   16-AUG-23 1NCW    1       REMARK                                   
REVDAT   3   13-JUL-11 1NCW    1       VERSN                                    
REVDAT   2   25-MAR-08 1NCW    1       VERSN                                    
REVDAT   1   13-MAY-03 1NCW    0                                                
JRNL        AUTH   X.ZHU,A.HEINE,F.MONNAT,K.N.HOUK,K.D.JANDA,I.A.WILSON         
JRNL        TITL   STRUCTURAL BASIS FOR ANTIBODY CATALYSIS OF A CATIONIC        
JRNL        TITL 2 CYCLIZATION REACTION                                         
JRNL        REF    J.MOL.BIOL.                   V. 329    69 2003              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   12742019                                                     
JRNL        DOI    10.1016/S0022-2836(03)00406-6                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.30 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : SHELXL-97                                            
REMARK   3   AUTHORS     : G.M.SHELDRICK                                        
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 86.0                           
REMARK   3   CROSS-VALIDATION METHOD           : FREE R-VALUE                   
REMARK   3   FREE R VALUE TEST SET SELECTION   : RANDOM                         
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (NO CUTOFF).                         
REMARK   3   R VALUE   (WORKING + TEST SET, NO CUTOFF) : NULL                   
REMARK   3   R VALUE          (WORKING SET, NO CUTOFF) : 0.158                  
REMARK   3   FREE R VALUE                  (NO CUTOFF) : 0.208                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000                  
REMARK   3   FREE R VALUE TEST SET COUNT   (NO CUTOFF) : 7132                   
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (NO CUTOFF) : 117843                 
REMARK   3                                                                      
REMARK   3  FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F).                     
REMARK   3   R VALUE   (WORKING + TEST SET, F>4SIG(F)) : NULL                   
REMARK   3   R VALUE          (WORKING SET, F>4SIG(F)) : 0.148                  
REMARK   3   FREE R VALUE                  (F>4SIG(F)) : 0.198                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000                  
REMARK   3   FREE R VALUE TEST SET COUNT   (F>4SIG(F)) : 5962                   
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (F>4SIG(F)) : 92682                  
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS      : 3380                                          
REMARK   3   NUCLEIC ACID ATOMS : 0                                             
REMARK   3   HETEROGEN ATOMS    : 33                                            
REMARK   3   SOLVENT ATOMS      : 577                                           
REMARK   3                                                                      
REMARK   3  MODEL REFINEMENT.                                                   
REMARK   3   OCCUPANCY SUM OF NON-HYDROGEN ATOMS      : NULL                    
REMARK   3   OCCUPANCY SUM OF HYDROGEN ATOMS          : NULL                    
REMARK   3   NUMBER OF DISCRETELY DISORDERED RESIDUES : 0                       
REMARK   3   NUMBER OF LEAST-SQUARES PARAMETERS       : NULL                    
REMARK   3   NUMBER OF RESTRAINTS                     : NULL                    
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM RESTRAINT TARGET VALUES.                        
REMARK   3   BOND LENGTHS                         (A) : 0.013                   
REMARK   3   ANGLE DISTANCES                      (A) : 0.031                   
REMARK   3   SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000                   
REMARK   3   DISTANCES FROM RESTRAINT PLANES      (A) : 0.033                   
REMARK   3   ZERO CHIRAL VOLUMES               (A**3) : 0.067                   
REMARK   3   NON-ZERO CHIRAL VOLUMES           (A**3) : 0.081                   
REMARK   3   ANTI-BUMPING DISTANCE RESTRAINTS     (A) : 0.027                   
REMARK   3   RIGID-BOND ADP COMPONENTS         (A**2) : 0.004                   
REMARK   3   SIMILAR ADP COMPONENTS            (A**2) : 0.051                   
REMARK   3   APPROXIMATELY ISOTROPIC ADPS      (A**2) : 0.083                   
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228        
REMARK   3                                                                      
REMARK   3  STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER                        
REMARK   3   SPECIAL CASE: NULL                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: INITIAL REFINEMENT BEGUN WITH CNS         
REMARK   4                                                                      
REMARK   4 1NCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000017769.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 03-JUN-00                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.6                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ALS                                
REMARK 200  BEAMLINE                       : 5.0.2                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.1000                             
REMARK 200  MONOCHROMATOR                  : DOUBLE CYRSTAL SI(111)             
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 4                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 117957                             
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.300                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 86.0                               
REMARK 200  DATA REDUNDANCY                : 3.850                              
REMARK 200  R MERGE                    (I) : 0.04100                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 26.4000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.32                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 69.6                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.68800                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.500                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: PDB ENTRY 1MRD                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 56.66                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, AMMONIUM ACETATE, TRI-SODIUM    
REMARK 280  CITRATE, PH 5.6, EVAPORATION, TEMPERATURE 295K                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000      132.82300            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       32.03600            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       32.03600            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       66.41150            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       32.03600            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       32.03600            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000      199.23450            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       32.03600            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       32.03600            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       66.41150            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       32.03600            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       32.03600            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000      199.23450            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000      132.82300            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA,PQS                                              
REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19950 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH H 914  LIES ON A SPECIAL POSITION.                          
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG L  39   NH1 -  CZ  -  NH2 ANGL. DEV. =   7.4 DEGREES          
REMARK 500    ARG L  39   NE  -  CZ  -  NH1 ANGL. DEV. =  -6.3 DEGREES          
REMARK 500    ARG L 108   NE  -  CZ  -  NH1 ANGL. DEV. =   4.6 DEGREES          
REMARK 500    ARG L 108   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.3 DEGREES          
REMARK 500    GLY L 128   C   -  N   -  CA  ANGL. DEV. = -13.0 DEGREES          
REMARK 500    THR L 200   CA  -  CB  -  CG2 ANGL. DEV. =  -9.1 DEGREES          
REMARK 500    ARG L 211   NE  -  CZ  -  NH1 ANGL. DEV. =   3.7 DEGREES          
REMARK 500    LEU H  18   CA  -  CB  -  CG  ANGL. DEV. =  21.0 DEGREES          
REMARK 500    PHE H  40   CB  -  CG  -  CD1 ANGL. DEV. =  -4.7 DEGREES          
REMARK 500    TYR H  50   CB  -  CG  -  CD1 ANGL. DEV. =   7.0 DEGREES          
REMARK 500    TYR H  50   CG  -  CD1 -  CE1 ANGL. DEV. =   8.7 DEGREES          
REMARK 500    ARG H  66   NE  -  CZ  -  NH1 ANGL. DEV. =   3.2 DEGREES          
REMARK 500    CYS H 208   CA  -  CB  -  SG  ANGL. DEV. =   7.1 DEGREES          
REMARK 500    ARG H 228   NE  -  CZ  -  NH2 ANGL. DEV. =   4.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LEU L  47      -63.01   -138.78                                   
REMARK 500    SER H  15       -5.46     81.00                                   
REMARK 500    GLN H  16     -159.82    -92.43                                   
REMARK 500    ASP H  32      -33.31     65.66                                   
REMARK 500    PRO H  41      108.33    -38.64                                   
REMARK 500    SER H  65      -11.12     68.16                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ H 601                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 611                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 612                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 613                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 614                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1ND0   RELATED DB: PDB                                   
REMARK 900 CATIONIC CYCLIZATION ANTIBODY 4C6 COMPLEX WITH TRANSITION STATE      
REMARK 900 ANALOG                                                               
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE WAS NOT AVAILABLE AT THE  
REMARK 999 TIME OF PROCESSING.                                                  
DBREF  1NCW L    1   214  PDB    1NCW     1NCW             1    214             
DBREF  1NCW H    1   231  PDB    1NCW     1NCW             1    231             
SEQRES   1 L  219  ASP VAL VAL MET THR GLN SER PRO LYS THR ILE SER VAL          
SEQRES   2 L  219  THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER          
SEQRES   3 L  219  GLN ARG LEU LEU ASN SER ASN GLY LYS THR PHE LEU ASN          
SEQRES   4 L  219  TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU          
SEQRES   5 L  219  ILE TYR LEU GLY THR LYS LEU ASP SER GLY VAL PRO ASP          
SEQRES   6 L  219  ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR LEU          
SEQRES   7 L  219  LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR          
SEQRES   8 L  219  TYR CYS TRP GLN GLY THR HIS PHE PRO TYR THR PHE GLY          
SEQRES   9 L  219  GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA          
SEQRES  10 L  219  PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU          
SEQRES  11 L  219  THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN          
SEQRES  12 L  219  PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP          
SEQRES  13 L  219  GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR          
SEQRES  14 L  219  ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER          
SEQRES  15 L  219  THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN          
SEQRES  16 L  219  SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER          
SEQRES  17 L  219  PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS                  
SEQRES   1 H  222  ARG VAL GLN LEU GLN GLN SER GLY PRO GLY LEU VAL LYS          
SEQRES   2 H  222  PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR GLY          
SEQRES   3 H  222  TYR SER ILE THR SER ASP PHE ALA TRP ASN TRP ILE ARG          
SEQRES   4 H  222  GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE          
SEQRES   5 H  222  ASN TYR SER GLY PHE THR SER HIS ASN PRO SER LEU LYS          
SEQRES   6 H  222  SER ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN          
SEQRES   7 H  222  PHE PHE LEU GLN LEU ASN SER VAL THR THR GLU ASP THR          
SEQRES   8 H  222  ALA THR TYR TYR CYS ALA GLY LEU LEU TRP TYR ASP GLY          
SEQRES   9 H  222  GLY ALA GLY SER TRP GLY GLN GLY THR LEU VAL THR VAL          
SEQRES  10 H  222  SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU          
SEQRES  11 H  222  ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR          
SEQRES  12 H  222  LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL          
SEQRES  13 H  222  THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL          
SEQRES  14 H  222  HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR          
SEQRES  15 H  222  LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO          
SEQRES  16 H  222  SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER          
SEQRES  17 H  222  SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO          
SEQRES  18 H  222  THR                                                          
HET    BEZ  H 601       9                                                       
HET    GOL  H 611       6                                                       
HET    GOL  H 612       6                                                       
HET    GOL  H 613       6                                                       
HET    GOL  H 614       6                                                       
HETNAM     BEZ BENZOIC ACID                                                     
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   3  BEZ    C7 H6 O2                                                     
FORMUL   4  GOL    4(C3 H8 O3)                                                  
FORMUL   8  HOH   *577(H2 O)                                                    
HELIX    1   1 GLU L   79  LEU L   83  5                                   5    
HELIX    2   2 SER L  121  THR L  126  1                                   6    
HELIX    3   3 LYS L  183  HIS L  189  1                                   7    
HELIX    4   4 PRO H   61  LYS H   64  5                                   4    
HELIX    5   5 THR H   83  THR H   87  5                                   5    
HELIX    6   6 VAL H  127  THR H  133  5                                   5    
HELIX    7   7 SER H  163  SER H  165  5                                   3    
HELIX    8   8 SER H  196  TRP H  199  5                                   3    
HELIX    9   9 PRO H  213  SER H  216  5                                   4    
SHEET    1   A 4 MET L   4  SER L   7  0                                        
SHEET    2   A 4 ALA L  19  SER L  25 -1  O  LYS L  24   N  THR L   5           
SHEET    3   A 4 ASP L  70  ILE L  75 -1  O  PHE L  71   N  CYS L  23           
SHEET    4   A 4 PHE L  62  SER L  67 -1  N  THR L  63   O  LYS L  74           
SHEET    1   B 6 THR L  10  THR L  14  0                                        
SHEET    2   B 6 THR L 102  LYS L 107  1  O  GLU L 105   N  ILE L  11           
SHEET    3   B 6 GLY L  84  GLN L  90 -1  N  GLY L  84   O  LEU L 104           
SHEET    4   B 6 LEU L  33  GLN L  38 -1  N  GLN L  38   O  VAL L  85           
SHEET    5   B 6 PRO L  44  TYR L  49 -1  O  LYS L  45   N  LEU L  37           
SHEET    6   B 6 LYS L  53  LEU L  54 -1  O  LYS L  53   N  TYR L  49           
SHEET    1   C 4 THR L  10  THR L  14  0                                        
SHEET    2   C 4 THR L 102  LYS L 107  1  O  GLU L 105   N  ILE L  11           
SHEET    3   C 4 GLY L  84  GLN L  90 -1  N  GLY L  84   O  LEU L 104           
SHEET    4   C 4 THR L  97  PHE L  98 -1  O  THR L  97   N  GLN L  90           
SHEET    1   D 4 THR L 114  PHE L 118  0                                        
SHEET    2   D 4 GLY L 129  PHE L 139 -1  O  ASN L 137   N  THR L 114           
SHEET    3   D 4 TYR L 173  THR L 182 -1  O  LEU L 179   N  VAL L 132           
SHEET    4   D 4 VAL L 159  TRP L 163 -1  N  SER L 162   O  SER L 176           
SHEET    1   E 4 SER L 153  ARG L 155  0                                        
SHEET    2   E 4 ASN L 145  ILE L 150 -1  N  TRP L 148   O  ARG L 155           
SHEET    3   E 4 SER L 191  THR L 197 -1  O  GLU L 195   N  LYS L 147           
SHEET    4   E 4 ILE L 205  ASN L 210 -1  O  ILE L 205   N  ALA L 196           
SHEET    1   F 4 GLN H   3  SER H   7  0                                        
SHEET    2   F 4 LEU H  18  THR H  25 -1  O  THR H  25   N  GLN H   3           
SHEET    3   F 4 GLN H  77  LEU H  82 -1  O  PHE H  78   N  CYS H  22           
SHEET    4   F 4 ILE H  67  ASP H  72 -1  N  ASP H  72   O  GLN H  77           
SHEET    1   G 5 THR H  57  HIS H  59  0                                        
SHEET    2   G 5 LYS H  44  ASN H  52 -1  N  TYR H  50   O  SER H  58           
SHEET    3   G 5 PHE H  33  PHE H  40 -1  N  ARG H  38   O  GLU H  46           
SHEET    4   G 5 ALA H  88  LEU H  96 -1  O  TYR H  91   N  ILE H  37           
SHEET    5   G 5 SER H 102  TRP H 103 -1  O  SER H 102   N  GLY H  94           
SHEET    1   H 6 THR H  57  HIS H  59  0                                        
SHEET    2   H 6 LYS H  44  ASN H  52 -1  N  TYR H  50   O  SER H  58           
SHEET    3   H 6 PHE H  33  PHE H  40 -1  N  ARG H  38   O  GLU H  46           
SHEET    4   H 6 ALA H  88  LEU H  96 -1  O  TYR H  91   N  ILE H  37           
SHEET    5   H 6 THR H 107  VAL H 111 -1  O  THR H 107   N  TYR H  90           
SHEET    6   H 6 LEU H  11  VAL H  12  1  N  VAL H  12   O  THR H 110           
SHEET    1   I 4 SER H 120  LEU H 124  0                                        
SHEET    2   I 4 SER H 137  TYR H 147 -1  O  LEU H 143   N  TYR H 122           
SHEET    3   I 4 LEU H 184  THR H 194 -1  O  LEU H 187   N  VAL H 144           
SHEET    4   I 4 VAL H 171  THR H 173 -1  N  HIS H 172   O  SER H 190           
SHEET    1   J 4 SER H 120  LEU H 124  0                                        
SHEET    2   J 4 SER H 137  TYR H 147 -1  O  LEU H 143   N  TYR H 122           
SHEET    3   J 4 LEU H 184  THR H 194 -1  O  LEU H 187   N  VAL H 144           
SHEET    4   J 4 VAL H 177  GLN H 179 -1  N  VAL H 177   O  THR H 186           
SHEET    1   K 3 THR H 153  TRP H 157  0                                        
SHEET    2   K 3 THR H 206  HIS H 212 -1  O  ASN H 209   N  THR H 156           
SHEET    3   K 3 THR H 217  LYS H 222 -1  O  VAL H 219   N  VAL H 210           
SSBOND   1 CYS L   23    CYS L   88                          1555   1555  2.20  
SSBOND   2 CYS L  134    CYS L  194                          1555   1555  1.98  
SSBOND   3 CYS L  214    CYS H  128                          1555   1555  2.00  
SSBOND   4 CYS H   22    CYS H   92                          1555   1555  2.23  
SSBOND   5 CYS H  142    CYS H  208                          1555   1555  2.02  
CISPEP   1 SER L    7    PRO L    8          0        -5.18                     
CISPEP   2 PHE L   94    PRO L   95          0        -9.99                     
CISPEP   3 TYR L  140    PRO L  141          0        -1.91                     
CISPEP   4 PHE H  148    PRO H  149          0        -8.68                     
CISPEP   5 GLU H  150    PRO H  151          0        -5.44                     
CISPEP   6 TRP H  199    PRO H  200          0         8.37                     
SITE     1 AC1  6 ALA H  34  ASN H  35A LEU H  95  PRO H 230                    
SITE     2 AC1  6 TRP L  89  GLY L  91                                          
SITE     1 AC2 10 PHE H 174  PRO H 175  THR H 186  LEU H 187                    
SITE     2 AC2 10 SER H 188  HOH H 685  HOH H 733  SER L 162                    
SITE     3 AC2 10 SER L 176  THR L 178                                          
SITE     1 AC3  9 VAL H  12  GLN H  16  SER H  17  ASP H  32                    
SITE     2 AC3  9 TYR H  53  HOH H 621  HOH H 653  HOH H 686                    
SITE     3 AC3  9 HOH H 806                                                     
SITE     1 AC4  8 SER H 120  VAL H 121  SER H 215  VAL H 219                    
SITE     2 AC4  8 LYS H 221  HOH H 668  HOH H 709  GLU L 123                    
SITE     1 AC5  6 ARG H  71  ASP H  72  THR H  73  LYS L  53                    
SITE     2 AC5  6 LEU L  54  HOH L 236                                          
CRYST1   64.072   64.072  265.646  90.00  90.00  90.00 P 41 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.015607  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.015607  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.003764        0.00000