HEADER SIGNALING PROTEIN 12-DEC-02 1NF3 TITLE STRUCTURE OF CDC42 IN A COMPLEX WITH THE GTPASE-BINDING DOMAIN OF THE TITLE 2 CELL POLARITY PROTEIN, PAR6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: G25K GTP-BINDING PROTEIN, PLACENTAL ISOFORM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GP, CDC42 HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PAR-6B; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: GTPASE-BINDING DOMAIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC42; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22UNI; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: PAR6B; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX KEYWDS SEMI-CRIB MOTIF, SWITCH I AND II, PDZ DOMAIN, GTPASE BINDING DOMAIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.GARRARD,C.T.CAPALDO,L.GAO,M.K.ROSEN,I.G.MACARA,D.R.TOMCHICK REVDAT 5 30-OCT-24 1NF3 1 REMARK REVDAT 4 16-AUG-23 1NF3 1 REMARK REVDAT 3 27-OCT-21 1NF3 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1NF3 1 VERSN REVDAT 1 04-MAR-03 1NF3 0 JRNL AUTH S.M.GARRARD,C.T.CAPALDO,L.GAO,M.K.ROSEN,I.G.MACARA, JRNL AUTH 2 D.R.TOMCHICK JRNL TITL STRUCTURE OF CDC42 IN A COMPLEX WITH THE GTPASE-BINDING JRNL TITL 2 DOMAIN OF THE CELL POLARITY PROTEIN, PAR6 JRNL REF EMBO J. V. 22 1125 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12606577 JRNL DOI 10.1093/EMBOJ/CDG110 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.GAO,G.JOBERTY,I.G.MACARA REMARK 1 TITL ASSEMBLY OF EPITHELIAL TIGHT JUNCTIONS IS NEGATIVELY REMARK 1 TITL 2 REGULATED BY PAR6 REMARK 1 REF CURR.BIOL. V. 12 221 2002 REMARK 1 REFN ISSN 0960-9822 REMARK 1 DOI 10.1016/S0960-9822(01)00663-7 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.JOBERTY,C.PETERSEN,L.GAO,I.G.MACARA REMARK 1 TITL THE CELL-POLARITY PROTEIN PAR6 LINKS PAR3 AND ATYPICAL REMARK 1 TITL 2 PROTEIN KINASE C TO CDC42 REMARK 1 REF NAT.CELL BIOL. V. 2 531 2000 REMARK 1 REFN ISSN 1465-7392 REMARK 1 DOI 10.1038/35019573 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.LIN,A.S.EDWARDS,J.P.FAWCETT,G.MBAMALU,J.D.SCOTT,T.PAWSON REMARK 1 TITL A MAMMALIAN PAR-3-PAR-6 COMPLEX IMPLICATED IN CDC42/RAC1 AND REMARK 1 TITL 2 APKC SIGNALLING AND CELL POLARITY REMARK 1 REF NAT.CELL BIOL. V. 2 540 2000 REMARK 1 REFN ISSN 1465-7392 REMARK 1 DOI 10.1038/35019592 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.G.QIU,A.ABO,G.STEVEN MARTIN REMARK 1 TITL A HUMAN HOMOLOG OF THE C. ELEGANS POLARITY DETERMINANT PAR-6 REMARK 1 TITL 2 LINKS RAC AND CDC42 TO PKCZETA SIGNALING AND CELL REMARK 1 TITL 3 TRANSFORMATION REMARK 1 REF CURR.BIOL. V. 10 697 2000 REMARK 1 REFN ISSN 0960-9822 REMARK 1 DOI 10.1016/S0960-9822(00)00535-2 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.L.WATTS,B.ETEMAD-MOGHADAM,S.GUO,L.BOYD,B.W.DRAPER, REMARK 1 AUTH 2 C.C.MELLO,J.R.PRIESS,K.J.KEMPHUES REMARK 1 TITL PAR-6, A GENE INVOLVED IN THE ESTABLISHMENT OF ASYMMETRY IN REMARK 1 TITL 2 EARLY C. ELEGANS EMBRYOS, MEDIATES THE ASYMMETRIC REMARK 1 TITL 3 LOCALIZATION OF PAR-3 REMARK 1 REF DEVELOPMENT V. 122 3133 1996 REMARK 1 REFN ISSN 0950-1991 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 34917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3173 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 165 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4906 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -5.93000 REMARK 3 B33 (A**2) : 4.95000 REMARK 3 B12 (A**2) : 0.63000 REMARK 3 B13 (A**2) : -3.70000 REMARK 3 B23 (A**2) : -0.45000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.100 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.560 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.130 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 46.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LIGANDS.PARAM REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGANDS.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : GRAPHITE DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2NGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 4000, 100MM SODIUM CITRATE, REMARK 280 0.2M AMMONIUM ACETATE, PH 6.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -41.70645 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -53.78699 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 191 REMARK 465 LEU B 191 REMARK 465 ARG C 126 REMARK 465 LYS C 127 REMARK 465 LYS C 128 REMARK 465 PRO C 129 REMARK 465 HIS C 130 REMARK 465 ARG D 126 REMARK 465 LYS D 127 REMARK 465 LYS D 128 REMARK 465 PRO D 129 REMARK 465 HIS D 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 168 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 156.90 -44.41 REMARK 500 SER A 30 -88.54 -65.25 REMARK 500 LYS A 96 -64.54 -130.73 REMARK 500 ASN A 132 29.73 -141.18 REMARK 500 PRO A 179 132.49 -38.01 REMARK 500 PRO A 180 8.09 -63.53 REMARK 500 PHE B 37 126.36 -171.89 REMARK 500 LYS B 96 -56.75 -122.46 REMARK 500 ASN C 212 -8.32 85.29 REMARK 500 ASN C 241 76.51 -155.43 REMARK 500 PRO C 248 151.89 -48.56 REMARK 500 PRO D 168 152.29 -46.44 REMARK 500 ASN D 212 -9.09 85.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 OG1 77.9 REMARK 620 3 GNP A 200 O2G 169.7 91.8 REMARK 620 4 GNP A 200 O1B 95.8 170.0 94.2 REMARK 620 5 HOH A 500 O 90.9 82.9 86.9 89.5 REMARK 620 6 HOH A 501 O 87.6 98.4 94.9 89.1 177.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 THR B 35 OG1 77.2 REMARK 620 3 GNP B 202 O2G 166.5 89.4 REMARK 620 4 GNP B 202 O1B 99.6 174.2 93.9 REMARK 620 5 HOH B 502 O 91.5 86.0 89.3 89.4 REMARK 620 6 HOH B 503 O 84.7 94.8 94.9 89.6 175.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 202 DBREF 1NF3 A 2 191 UNP P60953 CDC42_HUMAN 2 181 DBREF 1NF3 B 2 191 UNP P60953 CDC42_HUMAN 2 181 DBREF 1NF3 C 126 253 UNP Q9JK83 PAR6B_MOUSE 126 253 DBREF 1NF3 D 126 253 UNP Q9JK83 PAR6B_MOUSE 126 253 SEQADV 1NF3 GLY A -5 UNP P60953 EXPRESSION TAG SEQADV 1NF3 ALA A -4 UNP P60953 EXPRESSION TAG SEQADV 1NF3 MET A -3 UNP P60953 EXPRESSION TAG SEQADV 1NF3 GLY A -2 UNP P60953 EXPRESSION TAG SEQADV 1NF3 ILE A -1 UNP P60953 EXPRESSION TAG SEQADV 1NF3 LEU A 61 UNP P60953 GLN 61 ENGINEERED MUTATION SEQADV 1NF3 GLY B -5 UNP P60953 EXPRESSION TAG SEQADV 1NF3 ALA B -4 UNP P60953 EXPRESSION TAG SEQADV 1NF3 MET B -3 UNP P60953 EXPRESSION TAG SEQADV 1NF3 GLY B -2 UNP P60953 EXPRESSION TAG SEQADV 1NF3 ILE B -1 UNP P60953 EXPRESSION TAG SEQADV 1NF3 LEU B 61 UNP P60953 GLN 61 ENGINEERED MUTATION SEQRES 1 A 195 GLY ALA MET GLY ILE GLN THR ILE LYS CYS VAL VAL VAL SEQRES 2 A 195 GLY ASP GLY ALA VAL GLY LYS THR CYS LEU LEU ILE SER SEQRES 3 A 195 TYR THR THR ASN LYS PHE PRO SER GLU TYR VAL PRO THR SEQRES 4 A 195 VAL PHE ASP ASN TYR ALA VAL THR VAL MET ILE GLY GLY SEQRES 5 A 195 GLU PRO TYR THR LEU GLY LEU PHE ASP THR ALA GLY LEU SEQRES 6 A 195 GLU ASP TYR ASP ARG LEU ARG PRO LEU SER TYR PRO GLN SEQRES 7 A 195 THR ASP VAL PHE LEU VAL CYS PHE SER VAL VAL SER PRO SEQRES 8 A 195 SER SER PHE GLU ASN VAL LYS GLU LYS TRP VAL PRO GLU SEQRES 9 A 195 ILE THR HIS HIS CYS PRO LYS THR PRO PHE LEU LEU VAL SEQRES 10 A 195 GLY THR GLN ILE ASP LEU ARG ASP ASP PRO SER THR ILE SEQRES 11 A 195 GLU LYS LEU ALA LYS ASN LYS GLN LYS PRO ILE THR PRO SEQRES 12 A 195 GLU THR ALA GLU LYS LEU ALA ARG ASP LEU LYS ALA VAL SEQRES 13 A 195 LYS TYR VAL GLU CYS SER ALA LEU THR GLN LYS GLY LEU SEQRES 14 A 195 LYS ASN VAL PHE ASP GLU ALA ILE LEU ALA ALA LEU GLU SEQRES 15 A 195 PRO PRO GLU PRO LYS LYS SER ARG ARG CYS VAL LEU LEU SEQRES 1 B 195 GLY ALA MET GLY ILE GLN THR ILE LYS CYS VAL VAL VAL SEQRES 2 B 195 GLY ASP GLY ALA VAL GLY LYS THR CYS LEU LEU ILE SER SEQRES 3 B 195 TYR THR THR ASN LYS PHE PRO SER GLU TYR VAL PRO THR SEQRES 4 B 195 VAL PHE ASP ASN TYR ALA VAL THR VAL MET ILE GLY GLY SEQRES 5 B 195 GLU PRO TYR THR LEU GLY LEU PHE ASP THR ALA GLY LEU SEQRES 6 B 195 GLU ASP TYR ASP ARG LEU ARG PRO LEU SER TYR PRO GLN SEQRES 7 B 195 THR ASP VAL PHE LEU VAL CYS PHE SER VAL VAL SER PRO SEQRES 8 B 195 SER SER PHE GLU ASN VAL LYS GLU LYS TRP VAL PRO GLU SEQRES 9 B 195 ILE THR HIS HIS CYS PRO LYS THR PRO PHE LEU LEU VAL SEQRES 10 B 195 GLY THR GLN ILE ASP LEU ARG ASP ASP PRO SER THR ILE SEQRES 11 B 195 GLU LYS LEU ALA LYS ASN LYS GLN LYS PRO ILE THR PRO SEQRES 12 B 195 GLU THR ALA GLU LYS LEU ALA ARG ASP LEU LYS ALA VAL SEQRES 13 B 195 LYS TYR VAL GLU CYS SER ALA LEU THR GLN LYS GLY LEU SEQRES 14 B 195 LYS ASN VAL PHE ASP GLU ALA ILE LEU ALA ALA LEU GLU SEQRES 15 B 195 PRO PRO GLU PRO LYS LYS SER ARG ARG CYS VAL LEU LEU SEQRES 1 C 128 ARG LYS LYS PRO HIS ILE VAL ILE SER MET PRO GLN ASP SEQRES 2 C 128 PHE ARG PRO VAL SER SER ILE ILE ASP VAL ASP ILE LEU SEQRES 3 C 128 PRO GLU THR HIS ARG ARG VAL ARG LEU CYS LYS TYR GLY SEQRES 4 C 128 THR GLU LYS PRO LEU GLY PHE TYR ILE ARG ASP GLY SER SEQRES 5 C 128 SER VAL ARG VAL THR PRO HIS GLY LEU GLU LYS VAL PRO SEQRES 6 C 128 GLY ILE PHE ILE SER ARG LEU VAL PRO GLY GLY LEU ALA SEQRES 7 C 128 GLN SER THR GLY LEU LEU ALA VAL ASN ASP GLU VAL LEU SEQRES 8 C 128 GLU VAL ASN GLY ILE GLU VAL SER GLY LYS SER LEU ASP SEQRES 9 C 128 GLN VAL THR ASP MET MET ILE ALA ASN SER ARG ASN LEU SEQRES 10 C 128 ILE ILE THR VAL ARG PRO ALA ASN GLN ARG ASN SEQRES 1 D 128 ARG LYS LYS PRO HIS ILE VAL ILE SER MET PRO GLN ASP SEQRES 2 D 128 PHE ARG PRO VAL SER SER ILE ILE ASP VAL ASP ILE LEU SEQRES 3 D 128 PRO GLU THR HIS ARG ARG VAL ARG LEU CYS LYS TYR GLY SEQRES 4 D 128 THR GLU LYS PRO LEU GLY PHE TYR ILE ARG ASP GLY SER SEQRES 5 D 128 SER VAL ARG VAL THR PRO HIS GLY LEU GLU LYS VAL PRO SEQRES 6 D 128 GLY ILE PHE ILE SER ARG LEU VAL PRO GLY GLY LEU ALA SEQRES 7 D 128 GLN SER THR GLY LEU LEU ALA VAL ASN ASP GLU VAL LEU SEQRES 8 D 128 GLU VAL ASN GLY ILE GLU VAL SER GLY LYS SER LEU ASP SEQRES 9 D 128 GLN VAL THR ASP MET MET ILE ALA ASN SER ARG ASN LEU SEQRES 10 D 128 ILE ILE THR VAL ARG PRO ALA ASN GLN ARG ASN HET MG A 201 1 HET GNP A 200 32 HET MG B 203 1 HET GNP B 202 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 5 MG 2(MG 2+) FORMUL 6 GNP 2(C10 H17 N6 O13 P3) FORMUL 9 HOH *423(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 LEU A 61 TYR A 72 5 12 HELIX 3 3 SER A 86 LYS A 96 1 11 HELIX 4 4 LYS A 96 CYS A 105 1 10 HELIX 5 5 GLN A 116 ARG A 120 5 5 HELIX 6 6 ASP A 122 LYS A 131 1 10 HELIX 7 7 THR A 138 LYS A 150 1 13 HELIX 8 8 GLY A 164 GLU A 178 1 15 HELIX 9 9 GLY B 15 ASN B 26 1 12 HELIX 10 10 LEU B 61 TYR B 72 5 12 HELIX 11 11 SER B 86 LYS B 96 1 11 HELIX 12 12 LYS B 96 CYS B 105 1 10 HELIX 13 13 GLN B 116 ASP B 121 5 6 HELIX 14 14 ASP B 122 LYS B 131 1 10 HELIX 15 15 THR B 138 LYS B 150 1 13 HELIX 16 16 GLY B 164 GLU B 178 1 15 HELIX 17 17 PRO B 182 ARG B 187 1 6 HELIX 18 18 GLY C 201 GLY C 207 1 7 HELIX 19 19 SER C 227 ASN C 238 1 12 HELIX 20 20 GLY D 201 GLY D 207 1 7 HELIX 21 21 SER D 227 SER D 239 1 13 SHEET 1 A 4 PHE C 171 THR C 182 0 SHEET 2 A 4 GLY C 185 LEU C 197 -1 O GLY C 185 N THR C 182 SHEET 3 A 4 GLU C 214 VAL C 218 -1 O VAL C 215 N ILE C 192 SHEET 4 A 4 ILE C 221 GLU C 222 -1 O ILE C 221 N VAL C 218 SHEET 1 B12 PHE C 171 THR C 182 0 SHEET 2 B12 GLY C 185 LEU C 197 -1 O GLY C 185 N THR C 182 SHEET 3 B12 GLU C 214 VAL C 218 -1 O VAL C 215 N ILE C 192 SHEET 4 B12 LEU C 242 ARG C 247 -1 O ARG C 247 N GLU C 214 SHEET 5 B12 ARG C 156 LEU C 160 -1 N VAL C 158 O ILE C 244 SHEET 6 B12 GLN C 137 ILE C 146 -1 N SER C 144 O ARG C 159 SHEET 7 B12 PHE A 37 ILE A 46 -1 N ASN A 39 O VAL C 142 SHEET 8 B12 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 9 B12 THR A 3 GLY A 10 1 N ILE A 4 O THR A 52 SHEET 10 B12 VAL A 77 SER A 83 1 O CYS A 81 N VAL A 9 SHEET 11 B12 PHE A 110 THR A 115 1 O VAL A 113 N VAL A 80 SHEET 12 B12 TYR A 154 GLU A 156 1 O VAL A 155 N GLY A 114 SHEET 1 C 4 PHE D 171 VAL D 181 0 SHEET 2 C 4 LEU D 186 LEU D 197 -1 O GLY D 191 N GLY D 176 SHEET 3 C 4 GLU D 214 VAL D 218 -1 O VAL D 215 N ILE D 192 SHEET 4 C 4 ILE D 221 GLU D 222 -1 O ILE D 221 N VAL D 218 SHEET 1 D12 PHE D 171 VAL D 181 0 SHEET 2 D12 LEU D 186 LEU D 197 -1 O GLY D 191 N GLY D 176 SHEET 3 D12 GLU D 214 VAL D 218 -1 O VAL D 215 N ILE D 192 SHEET 4 D12 LEU D 242 ARG D 247 -1 O THR D 245 N GLU D 217 SHEET 5 D12 ARG D 156 LEU D 160 -1 N VAL D 158 O ILE D 244 SHEET 6 D12 GLN D 137 ILE D 146 -1 N SER D 144 O ARG D 159 SHEET 7 D12 PHE B 37 ILE B 46 -1 N ASN B 39 O VAL D 142 SHEET 8 D12 GLU B 49 THR B 58 -1 O LEU B 53 N VAL B 42 SHEET 9 D12 THR B 3 GLY B 10 1 N CYS B 6 O PHE B 56 SHEET 10 D12 VAL B 77 SER B 83 1 O CYS B 81 N VAL B 9 SHEET 11 D12 PHE B 110 THR B 115 1 O VAL B 113 N VAL B 80 SHEET 12 D12 TYR B 154 GLU B 156 1 O VAL B 155 N GLY B 114 SSBOND 1 CYS A 105 CYS A 188 1555 1555 2.06 SSBOND 2 CYS B 105 CYS B 188 1555 1555 2.06 LINK OG1 THR A 17 MG MG A 201 1555 1555 2.28 LINK OG1 THR A 35 MG MG A 201 1555 1555 2.14 LINK O2G GNP A 200 MG MG A 201 1555 1555 1.97 LINK O1B GNP A 200 MG MG A 201 1555 1555 2.02 LINK MG MG A 201 O HOH A 500 1555 1555 2.06 LINK MG MG A 201 O HOH A 501 1555 1555 2.03 LINK OG1 THR B 17 MG MG B 203 1555 1555 2.34 LINK OG1 THR B 35 MG MG B 203 1555 1555 1.98 LINK O2G GNP B 202 MG MG B 203 1555 1555 2.01 LINK O1B GNP B 202 MG MG B 203 1555 1555 2.05 LINK MG MG B 203 O HOH B 502 1555 1555 2.06 LINK MG MG B 203 O HOH B 503 1555 1555 2.04 SITE 1 AC1 5 THR A 17 THR A 35 GNP A 200 HOH A 500 SITE 2 AC1 5 HOH A 501 SITE 1 AC2 5 THR B 17 THR B 35 GNP B 202 HOH B 502 SITE 2 AC2 5 HOH B 503 SITE 1 AC3 25 GLY A 12 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC3 25 LYS A 16 THR A 17 CYS A 18 PHE A 28 SITE 3 AC3 25 TYR A 32 PRO A 34 THR A 35 GLY A 60 SITE 4 AC3 25 GLN A 116 ASP A 118 LEU A 119 SER A 158 SITE 5 AC3 25 ALA A 159 LEU A 160 MG A 201 HOH A 500 SITE 6 AC3 25 HOH A 501 HOH A 511 HOH A 534 HOH A 617 SITE 7 AC3 25 HOH A 805 SITE 1 AC4 26 ASP B 11 GLY B 12 ALA B 13 VAL B 14 SITE 2 AC4 26 GLY B 15 LYS B 16 THR B 17 CYS B 18 SITE 3 AC4 26 PHE B 28 SER B 30 TYR B 32 PRO B 34 SITE 4 AC4 26 THR B 35 GLY B 60 GLN B 116 ASP B 118 SITE 5 AC4 26 LEU B 119 SER B 158 ALA B 159 LEU B 160 SITE 6 AC4 26 MG B 203 HOH B 502 HOH B 503 HOH B 510 SITE 7 AC4 26 HOH B 557 HOH B 580 CRYST1 41.744 53.787 79.521 81.55 76.59 90.04 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023956 0.000016 -0.005780 0.00000 SCALE2 0.000000 0.018592 -0.002844 0.00000 SCALE3 0.000000 0.000000 0.013078 0.00000