HEADER FLAVOPROTEIN 27-FEB-95 1NFP TITLE STRUCTURAL REFINEMENT OF THE NON-FLUORESCENT FLAVOPROTEIN FROM TITLE 2 PHOTOBACTERIUM LEIOGNATHI AT 1.60 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUXF GENE PRODUCT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTOBACTERIUM LEIOGNATHI; SOURCE 3 ORGANISM_TAXID: 658 KEYWDS FLAVIN MONONUCLEOTIDE, MYRISTATE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MOORE,M.N.G.NJAMES REVDAT 4 14-FEB-24 1NFP 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1NFP 1 VERSN REVDAT 2 24-FEB-09 1NFP 1 VERSN REVDAT 1 03-JUN-95 1NFP 0 JRNL AUTH S.A.MOORE,M.N.JAMES JRNL TITL STRUCTURAL REFINEMENT OF THE NON-FLUORESCENT FLAVOPROTEIN JRNL TITL 2 FROM PHOTOBACTERIUM LEIOGNATHI AT 1.60 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 249 195 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7776372 JRNL DOI 10.1006/JMBI.1995.0289 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.A.MOORE,M.N.G.JAMES REMARK 1 TITL COMMON STRUCTURAL FEATURES OF THE LUXF PROTEIN AND THE REMARK 1 TITL 2 SUBUNITS OF BACTERIAL LUCIFERASE: EVIDENCE FOR A REMARK 1 TITL 3 (BETA(SLASH)ALPHA)8 FOLD IN LUCIFERASE REMARK 1 REF PROTEIN SCI. V. 3 1914 1994 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.A.MOORE,M.N.G.JAMES,D.J.O'KANE,J.LEE REMARK 1 TITL CRYSTAL STRUCTURE OF A FLAVOPROTEIN RELATED TO THE SUBUNITS REMARK 1 TITL 2 OF BACTERIAL LUCIFERASE REMARK 1 REF EMBO J. V. 12 1767 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.A.MOORE,M.N.G.JAMES,D.J.O'KANE,J.LEE REMARK 1 TITL CRYSTALLIZATION OF PHOTOBACTERIUM LEIOGNATHI NFP, REMARK 1 TITL 2 NON-FLUORESCENT FLAVOPROTEIN AN UNUSUAL FLAVOPROTEIN WITH REMARK 1 TITL 3 LIMITED SEQUENCE IDENTITY TO BACTERIAL LUCIFERASE REMARK 1 REF J.MOL.BIOL. V. 224 523 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.7 REMARK 3 NUMBER OF REFLECTIONS : 27451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.018 REMARK 3 ANGLE DISTANCE (A) : 0.036 ; 0.032 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.038 ; 0.036 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.014 ; 0.018 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.194 ; 0.180 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.253 ; 0.360 REMARK 3 MULTIPLE TORSION (A) : 0.172 ; 0.360 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.206 ; 0.360 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.000 ; 50.000 REMARK 3 STAGGERED (DEGREES) : 18.100; 100.00 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.530 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.560 ; 3.700 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-92 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : WEIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28223 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA COLLECTED FROM TWO CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.46500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.61500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.46500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.11500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.61500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.46500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.11500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SYMMETRY REMARK 300 THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED REMARK 300 BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. REMARK 300 REMARK 300 APPLIED TO RESIDUES: 1 1 .. 423 REMARK 300 REMARK 300 TWO-FOLD AXIS AT 0,Y,1/4: THE MOLECULE IS A SYMMETRICAL REMARK 300 HOMODIMER. REMARK 300 SYMMETRY1 1 -1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 1 0.000000 0.000000 -1.000000 49.66500 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.61500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THE STRUCTURAL FORMULA HYDROGEN ATOMS EQUIVALENTS PERTAIN REMARK 400 TO THE OXIDIZED STATE OF FMN. THE CARBOXYLATE OF THE FATTY REMARK 400 ACID IS IONIZED; IN ADDITION THE RIBOSE PHOSPHATE IS LIKELY REMARK 400 SINGLY PROTONATED. THE PH OF THE CRYSTALS IS 5.5. THIS REMARK 400 GIVES 43 HYDROGEN ATOMS FOR THE STRUCTURE, 8 ON THE REMARK 400 ISOALLOXAZINE, 11 ON THE RIBOSE PHOSPHATE, AND 24 ON THE REMARK 400 MYRISTATE. THE C3 OF THE FATTY ACID IS COVALENTLY LINKED REMARK 400 TO C6 OF THE ISOALLOXAZINE NUCLEUS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 43 CA - CB - CG ANGL. DEV. = 32.4 DEGREES REMARK 500 ASP A 43 CB - CG - OD1 ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR A 88 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR A 88 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR A 155 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 THR A 160 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 ASP A 163 CA - CB - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP A 163 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 GLU A 164 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 HIS A 179 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 217 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 HIS A 225 CA - CB - CG ANGL. DEV. = -10.9 DEGREES REMARK 500 ASN A 228 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 17.85 -141.49 REMARK 500 GLU A 59 3.77 80.74 REMARK 500 THR A 160 -65.01 -13.35 REMARK 500 SER A 161 121.19 92.91 REMARK 500 ASN A 169 -156.90 -121.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 217 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 425 DBREF 1NFP A 1 228 UNP P09142 LUXF_PHOLE 1 228 SEQADV 1NFP VAL A 74 UNP P09142 ILE 74 CONFLICT SEQADV 1NFP ASN A 123 UNP P09142 GLY 123 CONFLICT SEQRES 1 A 228 MET THR LYS TRP ASN TYR GLY VAL PHE PHE LEU ASN PHE SEQRES 2 A 228 TYR HIS VAL GLY GLN GLN GLU PRO SER LEU THR MET SER SEQRES 3 A 228 ASN ALA LEU GLU THR LEU ARG ILE ILE ASP GLU ASP THR SEQRES 4 A 228 SER ILE TYR ASP VAL VAL ALA PHE SER GLU HIS HIS ILE SEQRES 5 A 228 ASP LYS SER TYR ASN ASP GLU THR LYS LEU ALA PRO PHE SEQRES 6 A 228 VAL SER LEU GLY LYS GLN ILE HIS VAL LEU ALA THR SER SEQRES 7 A 228 PRO GLU THR VAL VAL LYS ALA ALA LYS TYR GLY MET PRO SEQRES 8 A 228 LEU LEU PHE LYS TRP ASP ASP SER GLN GLN LYS ARG ILE SEQRES 9 A 228 GLU LEU LEU ASN HIS TYR GLN ALA ALA ALA ALA LYS PHE SEQRES 10 A 228 ASN VAL ASP ILE ALA ASN VAL ARG HIS ARG LEU MET LEU SEQRES 11 A 228 PHE VAL ASN VAL ASN ASP ASN PRO THR GLN ALA LYS ALA SEQRES 12 A 228 GLU LEU SER ILE TYR LEU GLU ASP TYR LEU SER TYR THR SEQRES 13 A 228 GLN ALA GLU THR SER ILE ASP GLU ILE ILE ASN SER ASN SEQRES 14 A 228 ALA ALA GLY ASN PHE ASP THR CYS LEU HIS HIS VAL ALA SEQRES 15 A 228 GLU MET ALA GLN GLY LEU ASN ASN LYS VAL ASP PHE LEU SEQRES 16 A 228 PHE CYS PHE GLU SER MET LYS ASP GLN GLU ASN LYS LYS SEQRES 17 A 228 SER LEU MET ILE ASN PHE ASP LYS ARG VAL ILE ASN TYR SEQRES 18 A 228 ARG LYS GLU HIS ASN LEU ASN HET SO4 A 423 5 HET FMN A 229 31 HET MYR A 424 16 HET FMN A 230 31 HET MYR A 425 16 HETNAM SO4 SULFATE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MYR MYRISTIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 SO4 O4 S 2- FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 MYR 2(C14 H28 O2) FORMUL 7 HOH *192(H2 O) HELIX 1 1 PRO A 21 GLU A 37 1 17 HELIX 2 2 PRO A 79 LYS A 87 1 9 HELIX 3 3 GLN A 100 LYS A 116 1 17 HELIX 4 4 PRO A 138 TYR A 155 1 18 HELIX 5 5 ILE A 162 ASN A 167 1 6 HELIX 6 6 PHE A 174 GLY A 187 1 14 HELIX 7 7 GLN A 204 GLU A 224 1 21 SHEET 1 A 2 VAL A 8 LEU A 11 0 SHEET 2 A 2 VAL A 45 SER A 48 1 N ALA A 46 O VAL A 8 SHEET 1 B 3 PHE A 65 LEU A 68 0 SHEET 2 B 3 GLN A 71 LEU A 75 -1 N HIS A 73 O VAL A 66 SHEET 3 B 3 PRO A 91 PHE A 94 1 N PRO A 91 O VAL A 74 SHEET 1 C 2 HIS A 126 VAL A 134 0 SHEET 2 C 2 VAL A 192 CYS A 197 1 N ASP A 193 O HIS A 126 SHEET 1 D 2 VAL A 132 VAL A 134 0 SHEET 2 D 2 ALA A 170 GLY A 172 1 N ALA A 170 O ASN A 133 LINK C6 FMN A 229 C3 MYR A 424 1555 1555 1.51 LINK C6 FMN A 230 C3 MYR A 425 1555 1555 1.50 SITE 1 AC1 2 HIS A 109 HOH A 363 SITE 1 AC2 17 TYR A 14 PRO A 21 THR A 60 LYS A 61 SITE 2 AC2 17 PRO A 64 THR A 77 SER A 78 THR A 81 SITE 3 AC2 17 LYS A 84 HOH A 248 HOH A 303 HOH A 375 SITE 4 AC2 17 HOH A 385 HOH A 393 HOH A 396 HOH A 397 SITE 5 AC2 17 MYR A 424 SITE 1 AC3 5 LEU A 32 PHE A 65 LYS A 87 TYR A 88 SITE 2 AC3 5 FMN A 229 SITE 1 AC4 9 MET A 1 THR A 2 TRP A 4 ALA A 182 SITE 2 AC4 9 TYR A 221 HOH A 261 HOH A 266 HOH A 360 SITE 3 AC4 9 MYR A 425 SITE 1 AC5 9 TYR A 6 PHE A 198 LEU A 210 ARG A 217 SITE 2 AC5 9 VAL A 218 TYR A 221 FMN A 230 HOH A 266 SITE 3 AC5 9 HOH A 318 CRYST1 56.930 92.230 99.230 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010078 0.00000