HEADER OXIDOREDUCTASE 16-DEC-02 1NG3 TITLE COMPLEX OF THIO (GLYCINE OXIDASE) WITH ACETYL-GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: GOXB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET16-B KEYWDS FLAVOPROTEIN, OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.C.SETTEMBRE,P.C.DORRESTEIN,J.PARK,A.AUGUSTINE,T.P.BEGLEY,S.E.EALICK REVDAT 7 03-APR-24 1NG3 1 REMARK REVDAT 6 14-FEB-24 1NG3 1 REMARK SEQADV REVDAT 5 11-OCT-17 1NG3 1 REMARK REVDAT 4 13-JUL-11 1NG3 1 VERSN REVDAT 3 24-FEB-09 1NG3 1 VERSN REVDAT 2 03-FEB-04 1NG3 1 REMARK REVDAT 1 08-APR-03 1NG3 0 JRNL AUTH E.C.SETTEMBRE,P.C.DORRESTEIN,J.PARK,A.AUGUSTINE,T.P.BEGLEY, JRNL AUTH 2 S.E.EALICK JRNL TITL STRUCTURAL AND MECHANISTIC STUDIES ON THIO, A GLYCINE JRNL TITL 2 OXIDASE ESSENTIAL FOR THIAMIN BIOSYNTHESIS IN BACILLUS JRNL TITL 3 SUBTILIS JRNL REF BIOCHEMISTRY V. 42 2971 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12627963 JRNL DOI 10.1021/BI026916V REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 35656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1905 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5779 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.54000 REMARK 3 B22 (A**2) : -4.54000 REMARK 3 B33 (A**2) : 9.07000 REMARK 3 B12 (A**2) : 6.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.410 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.980 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 40.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : AAC.PARAM REMARK 3 PARAMETER FILE 4 : FAD.PARAM REMARK 3 PARAMETER FILE 5 : PO4_FIX.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : FAD.TOP REMARK 3 TOPOLOGY FILE 4 : AAC.TOP REMARK 3 TOPOLOGY FILE 5 : PO4_FIX.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.15 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: MAD PHASED STRUCTURE OF THIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 2000, HEPES, PH 7.15, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.38500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.77000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.07750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 173.46250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.69250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.38500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 138.77000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 173.46250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.07750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.69250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE TWO-FOLD AXIS: -Y,-X,-Z+5/6. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 69.68900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 120.70489 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 173.46250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 GLN A 368 REMARK 465 ILE A 369 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 ILE B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 HIS B 0 REMARK 465 GLU B 365 REMARK 465 ALA B 366 REMARK 465 VAL B 367 REMARK 465 GLN B 368 REMARK 465 ILE B 369 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 258 N - CA - C ANGL. DEV. = 25.7 DEGREES REMARK 500 GLY A 258 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ALA B 259 N - CA - C ANGL. DEV. = 21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -173.56 -65.62 REMARK 500 ASN A 29 93.69 -54.69 REMARK 500 ARG A 41 -127.23 -111.53 REMARK 500 LEU A 50 55.96 -92.59 REMARK 500 ASP A 60 -160.84 -103.01 REMARK 500 ASP A 180 -49.89 -162.52 REMARK 500 SER A 190 32.12 -99.14 REMARK 500 LEU A 236 111.40 -161.87 REMARK 500 ALA A 259 118.47 67.84 REMARK 500 ASP A 295 -77.26 -99.83 REMARK 500 ASP A 318 99.27 176.83 REMARK 500 ALA A 324 67.55 -156.69 REMARK 500 PHE A 328 -75.84 -43.12 REMARK 500 ARG A 360 147.75 -39.39 REMARK 500 LYS B 2 177.24 -55.20 REMARK 500 ASN B 27 19.46 59.43 REMARK 500 ASN B 29 105.20 -54.04 REMARK 500 ARG B 41 -123.68 -103.50 REMARK 500 GLU B 57 -63.65 -108.26 REMARK 500 ASP B 60 -165.12 -66.76 REMARK 500 MET B 163 15.10 -66.29 REMARK 500 ALA B 166 136.17 -36.32 REMARK 500 LEU B 213 35.22 -96.66 REMARK 500 ALA B 259 102.72 81.27 REMARK 500 ASP B 295 -79.05 -112.32 REMARK 500 ASP B 318 99.90 -169.38 REMARK 500 PHE B 328 -98.26 25.81 REMARK 500 MET B 347 5.74 -69.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AAC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AAC B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NG4 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHOR, ALA 288 MAY REMARK 999 HAVE BEEN MUTATED ACCIDENTALLY TO PRO REMARK 999 DUE TO PCR ERROR. DBREF 1NG3 A 1 369 UNP O31616 GLOX_BACSU 1 369 DBREF 1NG3 B 1 369 UNP O31616 GLOX_BACSU 1 369 SEQADV 1NG3 PRO A 288 UNP O31616 ALA 288 SEE REMARK 999 SEQADV 1NG3 MET A -20 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLY A -19 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -18 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -17 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -16 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -15 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -14 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -13 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -12 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -11 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -10 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -9 UNP O31616 EXPRESSION TAG SEQADV 1NG3 SER A -8 UNP O31616 EXPRESSION TAG SEQADV 1NG3 SER A -7 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLY A -6 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A -5 UNP O31616 EXPRESSION TAG SEQADV 1NG3 ILE A -4 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLU A -3 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLY A -2 UNP O31616 EXPRESSION TAG SEQADV 1NG3 ARG A -1 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS A 0 UNP O31616 EXPRESSION TAG SEQADV 1NG3 PRO B 288 UNP O31616 ALA 288 SEE REMARK 999 SEQADV 1NG3 MET B -20 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLY B -19 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -18 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -17 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -16 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -15 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -14 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -13 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -12 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -11 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -10 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -9 UNP O31616 EXPRESSION TAG SEQADV 1NG3 SER B -8 UNP O31616 EXPRESSION TAG SEQADV 1NG3 SER B -7 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLY B -6 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B -5 UNP O31616 EXPRESSION TAG SEQADV 1NG3 ILE B -4 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLU B -3 UNP O31616 EXPRESSION TAG SEQADV 1NG3 GLY B -2 UNP O31616 EXPRESSION TAG SEQADV 1NG3 ARG B -1 UNP O31616 EXPRESSION TAG SEQADV 1NG3 HIS B 0 UNP O31616 EXPRESSION TAG SEQRES 1 A 390 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 390 SER GLY HIS ILE GLU GLY ARG HIS MET LYS ARG HIS TYR SEQRES 3 A 390 GLU ALA VAL VAL ILE GLY GLY GLY ILE ILE GLY SER ALA SEQRES 4 A 390 ILE ALA TYR TYR LEU ALA LYS GLU ASN LYS ASN THR ALA SEQRES 5 A 390 LEU PHE GLU SER GLY THR MET GLY GLY ARG THR THR SER SEQRES 6 A 390 ALA ALA ALA GLY MET LEU GLY ALA HIS ALA GLU CYS GLU SEQRES 7 A 390 GLU ARG ASP ALA PHE PHE ASP PHE ALA MET HIS SER GLN SEQRES 8 A 390 ARG LEU TYR LYS GLY LEU GLY GLU GLU LEU TYR ALA LEU SEQRES 9 A 390 SER GLY VAL ASP ILE ARG GLN HIS ASN GLY GLY MET PHE SEQRES 10 A 390 LYS LEU ALA PHE SER GLU GLU ASP VAL LEU GLN LEU ARG SEQRES 11 A 390 GLN MET ASP ASP LEU ASP SER VAL SER TRP TYR SER LYS SEQRES 12 A 390 GLU GLU VAL LEU GLU LYS GLU PRO TYR ALA SER GLY ASP SEQRES 13 A 390 ILE PHE GLY ALA SER PHE ILE GLN ASP ASP VAL HIS VAL SEQRES 14 A 390 GLU PRO TYR PHE VAL CYS LYS ALA TYR VAL LYS ALA ALA SEQRES 15 A 390 LYS MET LEU GLY ALA GLU ILE PHE GLU HIS THR PRO VAL SEQRES 16 A 390 LEU HIS VAL GLU ARG ASP GLY GLU ALA LEU PHE ILE LYS SEQRES 17 A 390 THR PRO SER GLY ASP VAL TRP ALA ASN HIS VAL VAL VAL SEQRES 18 A 390 ALA SER GLY VAL TRP SER GLY MET PHE PHE LYS GLN LEU SEQRES 19 A 390 GLY LEU ASN ASN ALA PHE LEU PRO VAL LYS GLY GLU CYS SEQRES 20 A 390 LEU SER VAL TRP ASN ASP ASP ILE PRO LEU THR LYS THR SEQRES 21 A 390 LEU TYR HIS ASP HIS CYS TYR ILE VAL PRO ARG LYS SER SEQRES 22 A 390 GLY ARG LEU VAL VAL GLY ALA THR MET LYS PRO GLY ASP SEQRES 23 A 390 TRP SER GLU THR PRO ASP LEU GLY GLY LEU GLU SER VAL SEQRES 24 A 390 MET LYS LYS ALA LYS THR MET LEU PRO PRO ILE GLN ASN SEQRES 25 A 390 MET LYS VAL ASP ARG PHE TRP ALA GLY LEU ARG PRO GLY SEQRES 26 A 390 THR LYS ASP GLY LYS PRO TYR ILE GLY ARG HIS PRO GLU SEQRES 27 A 390 ASP SER ARG ILE LEU PHE ALA ALA GLY HIS PHE ARG ASN SEQRES 28 A 390 GLY ILE LEU LEU ALA PRO ALA THR GLY ALA LEU ILE SER SEQRES 29 A 390 ASP LEU ILE MET ASN LYS GLU VAL ASN GLN ASP TRP LEU SEQRES 30 A 390 HIS ALA PHE ARG ILE ASP ARG LYS GLU ALA VAL GLN ILE SEQRES 1 B 390 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 390 SER GLY HIS ILE GLU GLY ARG HIS MET LYS ARG HIS TYR SEQRES 3 B 390 GLU ALA VAL VAL ILE GLY GLY GLY ILE ILE GLY SER ALA SEQRES 4 B 390 ILE ALA TYR TYR LEU ALA LYS GLU ASN LYS ASN THR ALA SEQRES 5 B 390 LEU PHE GLU SER GLY THR MET GLY GLY ARG THR THR SER SEQRES 6 B 390 ALA ALA ALA GLY MET LEU GLY ALA HIS ALA GLU CYS GLU SEQRES 7 B 390 GLU ARG ASP ALA PHE PHE ASP PHE ALA MET HIS SER GLN SEQRES 8 B 390 ARG LEU TYR LYS GLY LEU GLY GLU GLU LEU TYR ALA LEU SEQRES 9 B 390 SER GLY VAL ASP ILE ARG GLN HIS ASN GLY GLY MET PHE SEQRES 10 B 390 LYS LEU ALA PHE SER GLU GLU ASP VAL LEU GLN LEU ARG SEQRES 11 B 390 GLN MET ASP ASP LEU ASP SER VAL SER TRP TYR SER LYS SEQRES 12 B 390 GLU GLU VAL LEU GLU LYS GLU PRO TYR ALA SER GLY ASP SEQRES 13 B 390 ILE PHE GLY ALA SER PHE ILE GLN ASP ASP VAL HIS VAL SEQRES 14 B 390 GLU PRO TYR PHE VAL CYS LYS ALA TYR VAL LYS ALA ALA SEQRES 15 B 390 LYS MET LEU GLY ALA GLU ILE PHE GLU HIS THR PRO VAL SEQRES 16 B 390 LEU HIS VAL GLU ARG ASP GLY GLU ALA LEU PHE ILE LYS SEQRES 17 B 390 THR PRO SER GLY ASP VAL TRP ALA ASN HIS VAL VAL VAL SEQRES 18 B 390 ALA SER GLY VAL TRP SER GLY MET PHE PHE LYS GLN LEU SEQRES 19 B 390 GLY LEU ASN ASN ALA PHE LEU PRO VAL LYS GLY GLU CYS SEQRES 20 B 390 LEU SER VAL TRP ASN ASP ASP ILE PRO LEU THR LYS THR SEQRES 21 B 390 LEU TYR HIS ASP HIS CYS TYR ILE VAL PRO ARG LYS SER SEQRES 22 B 390 GLY ARG LEU VAL VAL GLY ALA THR MET LYS PRO GLY ASP SEQRES 23 B 390 TRP SER GLU THR PRO ASP LEU GLY GLY LEU GLU SER VAL SEQRES 24 B 390 MET LYS LYS ALA LYS THR MET LEU PRO PRO ILE GLN ASN SEQRES 25 B 390 MET LYS VAL ASP ARG PHE TRP ALA GLY LEU ARG PRO GLY SEQRES 26 B 390 THR LYS ASP GLY LYS PRO TYR ILE GLY ARG HIS PRO GLU SEQRES 27 B 390 ASP SER ARG ILE LEU PHE ALA ALA GLY HIS PHE ARG ASN SEQRES 28 B 390 GLY ILE LEU LEU ALA PRO ALA THR GLY ALA LEU ILE SER SEQRES 29 B 390 ASP LEU ILE MET ASN LYS GLU VAL ASN GLN ASP TRP LEU SEQRES 30 B 390 HIS ALA PHE ARG ILE ASP ARG LYS GLU ALA VAL GLN ILE HET PO4 A 402 5 HET FAD A 400 53 HET AAC A 401 8 HET FAD B 500 53 HET AAC B 501 8 HETNAM PO4 PHOSPHATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM AAC ACETYLAMINO-ACETIC ACID FORMUL 3 PO4 O4 P 3- FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 AAC 2(C4 H7 N O3) FORMUL 8 HOH *107(H2 O) HELIX 1 1 GLY A 13 GLU A 26 1 14 HELIX 2 2 ARG A 41 ALA A 46 1 6 HELIX 3 3 GLY A 51 GLU A 55 5 5 HELIX 4 4 ASP A 60 TYR A 73 1 14 HELIX 5 5 GLY A 75 GLY A 85 1 11 HELIX 6 6 SER A 101 GLN A 110 1 10 HELIX 7 7 SER A 121 GLU A 129 1 9 HELIX 8 8 GLU A 149 LEU A 164 1 16 HELIX 9 9 SER A 202 TRP A 205 5 4 HELIX 10 10 SER A 206 LEU A 213 1 8 HELIX 11 11 ASP A 271 LEU A 286 1 16 HELIX 12 12 PRO A 287 MET A 292 5 6 HELIX 13 13 LEU A 334 MET A 347 1 14 HELIX 14 14 ASN A 352 PHE A 359 1 8 HELIX 15 15 GLY B 13 GLU B 26 1 14 HELIX 16 16 ARG B 41 ALA B 46 5 6 HELIX 17 17 ASP B 60 TYR B 73 1 14 HELIX 18 18 GLY B 75 GLY B 85 1 11 HELIX 19 19 SER B 101 ARG B 109 1 9 HELIX 20 20 GLN B 110 ASP B 112 5 3 HELIX 21 21 SER B 121 GLU B 129 1 9 HELIX 22 22 GLU B 149 MET B 163 1 15 HELIX 23 23 SER B 202 TRP B 205 5 4 HELIX 24 24 SER B 206 LEU B 213 1 8 HELIX 25 25 ASP B 271 LEU B 286 1 16 HELIX 26 26 PRO B 287 MET B 292 5 6 HELIX 27 27 ASN B 330 MET B 347 1 18 HELIX 28 28 ASN B 352 PHE B 359 1 8 SHEET 1 A 6 TYR A 311 HIS A 315 0 SHEET 2 A 6 ASP A 318 ALA A 325 -1 O PHE A 323 N GLY A 313 SHEET 3 A 6 GLY A 191 VAL A 200 1 N VAL A 200 O LEU A 322 SHEET 4 A 6 HIS A 4 ILE A 10 1 N ILE A 10 O VAL A 199 SHEET 5 A 6 THR A 30 PHE A 33 1 O ALA A 31 N VAL A 9 SHEET 6 A 6 GLU A 167 PHE A 169 1 O PHE A 169 N LEU A 32 SHEET 1 B 5 TYR A 311 HIS A 315 0 SHEET 2 B 5 ASP A 318 ALA A 325 -1 O PHE A 323 N GLY A 313 SHEET 3 B 5 GLY A 191 VAL A 200 1 N VAL A 200 O LEU A 322 SHEET 4 B 5 LEU A 184 THR A 188 -1 N ILE A 186 O VAL A 193 SHEET 5 B 5 HIS A 176 ARG A 179 -1 N GLU A 178 O PHE A 185 SHEET 1 C 8 LYS A 293 GLY A 304 0 SHEET 2 C 8 LEU A 220 TRP A 230 -1 N CYS A 226 O TRP A 298 SHEET 3 C 8 ARG A 254 GLY A 258 -1 O VAL A 257 N LEU A 227 SHEET 4 C 8 CYS A 245 PRO A 249 -1 N VAL A 248 O VAL A 256 SHEET 5 C 8 THR A 239 HIS A 242 -1 N HIS A 242 O CYS A 245 SHEET 6 C 8 MET A 95 LEU A 98 1 N PHE A 96 O THR A 239 SHEET 7 C 8 ALA A 139 ILE A 142 -1 O ILE A 142 N MET A 95 SHEET 8 C 8 VAL A 117 TYR A 120 -1 N SER A 118 O PHE A 141 SHEET 1 D 3 LYS A 293 GLY A 304 0 SHEET 2 D 3 LEU A 220 TRP A 230 -1 N CYS A 226 O TRP A 298 SHEET 3 D 3 LYS A 262 PRO A 263 -1 O LYS A 262 N LYS A 223 SHEET 1 E 4 HIS B 4 TYR B 5 0 SHEET 2 E 4 GLY B 191 ALA B 195 1 O TRP B 194 N TYR B 5 SHEET 3 E 4 LEU B 184 THR B 188 -1 N THR B 188 O GLY B 191 SHEET 4 E 4 HIS B 176 GLU B 178 -1 N GLU B 178 O PHE B 185 SHEET 1 F 6 GLU B 167 GLU B 170 0 SHEET 2 F 6 THR B 30 GLU B 34 1 N LEU B 32 O PHE B 169 SHEET 3 F 6 ALA B 7 ILE B 10 1 N VAL B 9 O ALA B 31 SHEET 4 F 6 VAL B 198 VAL B 200 1 O VAL B 199 N ILE B 10 SHEET 5 F 6 ASP B 318 ALA B 325 1 O LEU B 322 N VAL B 198 SHEET 6 F 6 TYR B 311 HIS B 315 -1 N HIS B 315 O ILE B 321 SHEET 1 G 8 LYS B 293 GLY B 304 0 SHEET 2 G 8 LEU B 220 TRP B 230 -1 N LEU B 220 O GLY B 304 SHEET 3 G 8 ARG B 254 GLY B 258 -1 O VAL B 257 N LEU B 227 SHEET 4 G 8 CYS B 245 PRO B 249 -1 N VAL B 248 O VAL B 256 SHEET 5 G 8 THR B 239 HIS B 242 -1 N HIS B 242 O CYS B 245 SHEET 6 G 8 MET B 95 ALA B 99 1 N PHE B 96 O THR B 239 SHEET 7 G 8 GLY B 138 ILE B 142 -1 O SER B 140 N LYS B 97 SHEET 8 G 8 VAL B 117 TYR B 120 -1 N TYR B 120 O ALA B 139 SHEET 1 H 3 LYS B 293 GLY B 304 0 SHEET 2 H 3 LEU B 220 TRP B 230 -1 N LEU B 220 O GLY B 304 SHEET 3 H 3 LYS B 262 PRO B 263 -1 O LYS B 262 N LYS B 223 SITE 1 AC1 4 ARG A 89 ARG A 254 ARG B 89 ARG B 254 SITE 1 AC2 36 GLY A 11 GLY A 13 ILE A 14 ILE A 15 SITE 2 AC2 36 PHE A 33 GLU A 34 SER A 35 ARG A 41 SITE 3 AC2 36 THR A 42 THR A 43 ALA A 46 ALA A 47 SITE 4 AC2 36 GLY A 48 MET A 49 VAL A 174 SER A 202 SITE 5 AC2 36 GLY A 203 TRP A 205 PHE A 209 CYS A 226 SITE 6 AC2 36 TYR A 246 GLY A 300 ARG A 302 HIS A 327 SITE 7 AC2 36 PHE A 328 ARG A 329 ASN A 330 GLY A 331 SITE 8 AC2 36 ILE A 332 LEU A 333 AAC A 401 HOH A 403 SITE 9 AC2 36 HOH A 405 HOH A 409 HOH A 410 HOH A 438 SITE 1 AC3 7 MET A 49 TYR A 241 TYR A 246 ALA A 259 SITE 2 AC3 7 ARG A 302 ARG A 329 FAD A 400 SITE 1 AC4 35 GLY B 11 GLY B 13 ILE B 14 ILE B 15 SITE 2 AC4 35 PHE B 33 GLU B 34 SER B 35 ARG B 41 SITE 3 AC4 35 THR B 42 THR B 43 ALA B 46 ALA B 47 SITE 4 AC4 35 GLY B 48 MET B 49 VAL B 174 SER B 202 SITE 5 AC4 35 GLY B 203 TRP B 205 PHE B 209 CYS B 226 SITE 6 AC4 35 TYR B 246 GLY B 300 ARG B 302 HIS B 327 SITE 7 AC4 35 PHE B 328 ARG B 329 ASN B 330 GLY B 331 SITE 8 AC4 35 ILE B 332 LEU B 333 AAC B 501 HOH B 502 SITE 9 AC4 35 HOH B 504 HOH B 505 HOH B 543 SITE 1 AC5 9 MET B 49 GLU B 55 TYR B 241 TYR B 246 SITE 2 AC5 9 ALA B 259 ARG B 302 ARG B 329 FAD B 500 SITE 3 AC5 9 HOH B 514 CRYST1 139.378 139.378 208.155 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007175 0.004142 0.000000 0.00000 SCALE2 0.000000 0.008285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004804 0.00000