HEADER LIGASE 12-JAN-97 1NHT TITLE ENTRAPMENT OF 6-THIOPHOSPHORYL-IMP IN THE ACTIVE SITE OF CRYSTALLINE TITLE 2 ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI DATA COLLECTED AT TITLE 3 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.4.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: PUR A STRAIN H1238; SOURCE 5 ATCC: COLI GENETIC STOCK CENTER, STRAIN NUMBER 5408; SOURCE 6 OTHER_DETAILS: A GIFT FROM DR. B. BACHMAN, GENETIC CENTER, YALE SOURCE 7 UNIVERSITY KEYWDS LIGASE, SYNTHETASE, PURINE NUCLEOTIDE BIOSYNTHESIS, GTP-HYDROLYSING KEYWDS 2 ENZYMES EXPDTA X-RAY DIFFRACTION AUTHOR B.W.POLAND,C.A.BRUNS,H.J.FROMM,R.B.HONZATKO REVDAT 4 14-FEB-24 1NHT 1 REMARK LINK REVDAT 3 27-OCT-10 1NHT 1 FORMUL HET HETATM HETNAM REVDAT 2 24-FEB-09 1NHT 1 VERSN REVDAT 1 08-OCT-97 1NHT 0 JRNL AUTH B.W.POLAND,C.BRUNS,H.J.FROMM,R.B.HONZATKO JRNL TITL ENTRAPMENT OF 6-THIOPHOSPHORYL-IMP IN THE ACTIVE SITE OF JRNL TITL 2 CRYSTALLINE ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA JRNL TITL 3 COLI. JRNL REF J.BIOL.CHEM. V. 272 15200 1997 JRNL REFN ISSN 0021-9258 JRNL PMID 9182542 JRNL DOI 10.1074/JBC.272.24.15200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.M.SILVA,B.W.POLAND,C.R.HOFFMAN,H.J.FROMM,R.B.HONZATKO REMARK 1 TITL REFINED CRYSTAL STRUCTURES OF UNLIGATED ADENYLOSUCCINATE REMARK 1 TITL 2 SYNTHETASE FROM ESCHERICHIA COLI REMARK 1 REF J.MOL.BIOL. V. 254 431 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.W.POLAND,M.M.SILVA,M.A.SERRA,Y.CHO,K.H.KIM,E.M.HARRIS, REMARK 1 AUTH 2 R.B.HONZATKO REMARK 1 TITL CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM REMARK 1 TITL 2 ESCHERICHIA COLI. EVIDENCE FOR CONVERGENT EVOLUTION OF REMARK 1 TITL 3 GTP-BINDING DOMAINS REMARK 1 REF J.BIOL.CHEM. V. 268 25334 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.890 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.630 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THERE ARE TWO REGIONS THAT ARE DISORDERED AT POSITIONS REMARK 3 121 - 130, 298 - 303 AND ONE RESIDUE 416 THAT DIVERGE FROM REMARK 3 THE DNA SEQUENCE GIVEN IN PIR:A61592. RESIDUE 416 IS REMARK 3 GLYCINE IN THE ENTRY. REMARK 4 REMARK 4 1NHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-96 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22201 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.43333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.71667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.71667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.43333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 105.43333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 385 HG1 THR A 415 1.34 REMARK 500 OD2 ASP A 351 HH12 ARG A 353 1.39 REMARK 500 HH12 ARG A 32 O HIS A 53 1.42 REMARK 500 O ASP A 195 HG SER A 199 1.42 REMARK 500 O GLY A 225 HG1 THR A 243 1.43 REMARK 500 H2 GLY A 1 O ALA A 431 1.43 REMARK 500 O GLY A 384 HZ1 LYS A 386 1.44 REMARK 500 O ARG A 388 H LEU A 391 1.45 REMARK 500 HH TYR A 261 OD2 ASP A 411 1.46 REMARK 500 O LEU A 172 H ALA A 178 1.47 REMARK 500 HZ3 LYS A 18 OG1 THR A 422 1.51 REMARK 500 H VAL A 341 O MET A 375 1.51 REMARK 500 O ILE A 402 HG1 THR A 406 1.52 REMARK 500 H2 HOH A 545 O HOH A 641 1.52 REMARK 500 HH21 ARG A 426 O ASP A 430 1.53 REMARK 500 H1 HOH A 717 O HOH A 811 1.53 REMARK 500 HH TYR A 269 OE2 GLU A 296 1.53 REMARK 500 HG1 THR A 239 O3A PGS A 440 1.53 REMARK 500 O HOH A 596 H1 HOH A 747 1.54 REMARK 500 H TYR A 347 O VAL A 355 1.54 REMARK 500 O GLU A 403 H GLY A 407 1.54 REMARK 500 O ILE A 45 H GLU A 48 1.55 REMARK 500 O GLU A 14 HG1 THR A 330 1.55 REMARK 500 O HOH A 755 H2 HOH A 772 1.56 REMARK 500 HZ3 LYS A 16 O2P PGS A 440 1.56 REMARK 500 O HOH A 651 H1 HOH A 891 1.57 REMARK 500 O HOH A 594 H1 HOH A 630 1.57 REMARK 500 O VAL A 5 H LEU A 263 1.58 REMARK 500 O HOH A 626 H1 HOH A 774 1.58 REMARK 500 O GLY A 233 H TYR A 235 1.58 REMARK 500 OD2 ASP A 336 H THR A 382 1.59 REMARK 500 O HOH A 515 H1 HOH A 666 1.59 REMARK 500 H2 HOH A 525 O HOH A 948 1.59 REMARK 500 O HOH A 566 H2 HOH A 605 1.59 REMARK 500 H1 HOH A 530 O HOH A 786 1.59 REMARK 500 H1 HOH A 506 O HOH A 813 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH21 ARG A 257 O SER A 323 6555 1.50 REMARK 500 H2 HOH A 549 O HOH A 829 6555 1.53 REMARK 500 O HOH A 608 H2 HOH A 888 6555 1.54 REMARK 500 O HOH A 704 H2 HOH A 943 2664 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 7 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 10 -121.60 -111.62 REMARK 500 HIS A 53 -70.71 -118.92 REMARK 500 SER A 57 11.27 -69.01 REMARK 500 ARG A 121 -7.85 -53.63 REMARK 500 ARG A 131 -167.66 -65.20 REMARK 500 PHE A 152 -103.13 -61.90 REMARK 500 ASP A 153 98.45 -49.54 REMARK 500 TYR A 175 -73.51 -81.16 REMARK 500 GLN A 224 -156.89 44.33 REMARK 500 LEU A 227 3.05 -65.29 REMARK 500 THR A 234 60.44 -69.27 REMARK 500 SER A 240 23.34 -78.19 REMARK 500 ALA A 245 -8.14 -46.63 REMARK 500 VAL A 248 -72.23 -61.52 REMARK 500 SER A 252 -42.22 -132.67 REMARK 500 LYS A 267 10.80 -69.46 REMARK 500 ALA A 268 -21.31 70.84 REMARK 500 PHE A 278 70.93 -158.33 REMARK 500 ASN A 295 61.31 37.53 REMARK 500 THR A 300 -40.96 -134.39 REMARK 500 LEU A 324 158.59 -43.58 REMARK 500 ALA A 361 122.99 144.15 REMARK 500 ALA A 362 -66.31 -24.59 REMARK 500 ASP A 364 11.86 -64.95 REMARK 500 LYS A 366 -25.49 -38.79 REMARK 500 TYR A 372 -160.54 -67.73 REMARK 500 GLU A 373 79.22 -173.28 REMARK 500 TRP A 378 124.29 -171.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 327 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 435 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 GLY A 40 O 150.6 REMARK 620 3 GDP A 432 O1B 99.5 98.6 REMARK 620 4 GDP A 432 O2A 99.9 99.0 101.1 REMARK 620 5 HDA A 437 O 77.1 77.7 159.4 99.5 REMARK 620 6 PGS A 440 O3P 71.1 89.6 80.2 171.0 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: GNS REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: THESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE REMARK 800 BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE. REMARK 800 REMARK 800 SITE_IDENTIFIER: IMP REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: THESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE REMARK 800 BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE. REMARK 800 REMARK 800 SITE_IDENTIFIER: ASP REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: THESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE REMARK 800 BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HDA A 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGS A 440 DBREF 1NHT A 1 431 UNP P0A7D4 PURA_ECOLI 1 431 SEQRES 1 A 431 GLY ASN ASN VAL VAL VAL LEU GLY THR GLN TRP GLY ASP SEQRES 2 A 431 GLU GLY LYS GLY LYS ILE VAL ASP LEU LEU THR GLU ARG SEQRES 3 A 431 ALA LYS TYR VAL VAL ARG TYR GLN GLY GLY HIS ASN ALA SEQRES 4 A 431 GLY HIS THR LEU VAL ILE ASN GLY GLU LYS THR VAL LEU SEQRES 5 A 431 HIS LEU ILE PRO SER GLY ILE LEU ARG GLU ASN VAL THR SEQRES 6 A 431 SER ILE ILE GLY ASN GLY VAL VAL LEU SER PRO ALA ALA SEQRES 7 A 431 LEU MET LYS GLU MET LYS GLU LEU GLU ASP ARG GLY ILE SEQRES 8 A 431 PRO VAL ARG GLU ARG LEU LEU LEU SER GLU ALA CYS PRO SEQRES 9 A 431 LEU ILE LEU ASP TYR HIS VAL ALA LEU ASP ASN ALA ARG SEQRES 10 A 431 GLU LYS ALA ARG GLY ALA LYS ALA ILE GLY THR THR GLY SEQRES 11 A 431 ARG GLY ILE GLY PRO ALA TYR GLU ASP LYS VAL ALA ARG SEQRES 12 A 431 ARG GLY LEU ARG VAL GLY ASP LEU PHE ASP LYS GLU THR SEQRES 13 A 431 PHE ALA GLU LYS LEU LYS GLU VAL MET GLU TYR HIS ASN SEQRES 14 A 431 PHE GLN LEU VAL ASN TYR TYR LYS ALA GLU ALA VAL ASP SEQRES 15 A 431 TYR GLN LYS VAL LEU ASP ASP THR MET ALA VAL ALA ASP SEQRES 16 A 431 ILE LEU THR SER MET VAL VAL ASP VAL SER ASP LEU LEU SEQRES 17 A 431 ASP GLN ALA ARG GLN ARG GLY ASP PHE VAL MET PHE GLU SEQRES 18 A 431 GLY ALA GLN GLY THR LEU LEU ASP ILE ASP HIS GLY THR SEQRES 19 A 431 TYR PRO TYR VAL THR SER SER ASN THR THR ALA GLY GLY SEQRES 20 A 431 VAL ALA THR GLY SER GLY LEU GLY PRO ARG TYR VAL ASP SEQRES 21 A 431 TYR VAL LEU GLY ILE LEU LYS ALA TYR SER THR ARG VAL SEQRES 22 A 431 GLY ALA GLY PRO PHE PRO THR GLU LEU PHE ASP GLU THR SEQRES 23 A 431 GLY GLU PHE LEU CYS LYS GLN GLY ASN GLU PHE GLY ALA SEQRES 24 A 431 THR THR GLY ARG ARG ARG ARG THR GLY TRP LEU ASP THR SEQRES 25 A 431 VAL ALA VAL ARG ARG ALA VAL GLN LEU ASN SER LEU SER SEQRES 26 A 431 GLY PHE CYS LEU THR LYS LEU ASP VAL LEU ASP GLY LEU SEQRES 27 A 431 LYS GLU VAL LYS LEU CYS VAL ALA TYR ARG MET PRO ASP SEQRES 28 A 431 GLY ARG GLU VAL THR THR THR PRO LEU ALA ALA ASP ASP SEQRES 29 A 431 TRP LYS GLY VAL GLU PRO ILE TYR GLU THR MET PRO GLY SEQRES 30 A 431 TRP SER GLU SER THR PHE GLY VAL LYS ASP ARG SER GLY SEQRES 31 A 431 LEU PRO GLN ALA ALA LEU ASN TYR ILE LYS ARG ILE GLU SEQRES 32 A 431 GLU LEU THR GLY VAL PRO ILE ASP ILE ILE SER THR GLY SEQRES 33 A 431 PRO ASP ARG THR GLU THR MET ILE LEU ARG ASP PRO PHE SEQRES 34 A 431 ASP ALA HET MG A 435 1 HET GDP A 432 40 HET HDA A 437 9 HET PGS A 440 37 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM HDA HADACIDIN HETNAM PGS 2-DEAZO-6-THIOPHOSPHATE GUANOSINE-5'-MONOPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HDA C3 H5 N O4 FORMUL 5 PGS C10 H15 N4 O10 P2 S 1+ FORMUL 6 HOH *454(H2 O) HELIX 1 1 LYS A 16 ARG A 26 1 11 HELIX 2 2 PRO A 76 ASP A 88 1 13 HELIX 3 3 VAL A 93 ARG A 96 1 4 HELIX 4 4 ASP A 108 ALA A 120 1 13 HELIX 5 5 GLY A 122 LYS A 124 5 3 HELIX 6 6 ILE A 133 ALA A 142 1 10 HELIX 7 7 VAL A 148 LEU A 151 5 4 HELIX 8 8 LYS A 154 ASN A 174 1 21 HELIX 9 9 TYR A 183 MET A 200 1 18 HELIX 10 10 VAL A 204 ARG A 214 1 11 HELIX 11 11 THR A 226 LEU A 228 5 3 HELIX 12 12 ALA A 245 SER A 252 5 8 HELIX 13 13 PRO A 256 TYR A 258 5 3 HELIX 14 14 GLU A 285 GLN A 293 1 9 HELIX 15 15 THR A 312 ASN A 322 1 11 HELIX 16 16 LEU A 332 LEU A 335 5 4 HELIX 17 17 ALA A 362 TRP A 365 5 4 HELIX 18 18 ARG A 388 GLY A 390 5 3 HELIX 19 19 GLN A 393 THR A 406 1 14 SHEET 1 A 9 THR A 422 ILE A 424 0 SHEET 2 A 9 ILE A 410 SER A 414 -1 N ILE A 413 O MET A 423 SHEET 3 A 9 GLY A 326 LEU A 329 1 N PHE A 327 O ASP A 411 SHEET 4 A 9 TYR A 261 LEU A 266 1 N GLY A 264 O GLY A 326 SHEET 5 A 9 ASN A 3 GLY A 8 1 N VAL A 5 O TYR A 261 SHEET 6 A 9 VAL A 218 GLU A 221 1 N VAL A 218 O VAL A 4 SHEET 7 A 9 TYR A 29 ARG A 32 1 N TYR A 29 O MET A 219 SHEET 8 A 9 THR A 65 ILE A 68 1 N THR A 65 O VAL A 30 SHEET 9 A 9 LEU A 97 LEU A 99 1 N LEU A 98 O SER A 66 SHEET 1 B 2 LEU A 43 ILE A 45 0 SHEET 2 B 2 GLU A 48 THR A 50 -1 N THR A 50 O LEU A 43 SHEET 1 C 2 VAL A 73 SER A 75 0 SHEET 2 C 2 PRO A 104 ILE A 106 1 N PRO A 104 O LEU A 74 SHEET 1 D 2 SER A 270 ARG A 272 0 SHEET 2 D 2 ARG A 306 GLY A 308 -1 N GLY A 308 O SER A 270 SHEET 1 E 2 GLU A 340 LYS A 342 0 SHEET 2 E 2 THR A 374 PRO A 376 -1 N MET A 375 O VAL A 341 SHEET 1 F 2 ALA A 346 ARG A 348 0 SHEET 2 F 2 GLU A 369 ILE A 371 -1 N ILE A 371 O ALA A 346 LINK OD1 ASP A 13 MG MG A 435 1555 1555 2.81 LINK O GLY A 40 MG MG A 435 1555 1555 2.09 LINK O1B GDP A 432 MG MG A 435 1555 1555 1.82 LINK O2A GDP A 432 MG MG A 435 1555 1555 1.79 LINK MG MG A 435 O HDA A 437 1555 1555 2.02 LINK MG MG A 435 O3P PGS A 440 1555 1555 2.18 CISPEP 1 TYR A 235 PRO A 236 0 0.05 SITE 1 GNS 13 ASP A 13 GLU A 14 GLY A 15 LYS A 16 SITE 2 GNS 13 GLY A 17 LYS A 18 LYS A 331 LEU A 332 SITE 3 GNS 13 ASP A 333 SER A 414 THR A 415 GLY A 416 SITE 4 GNS 13 PRO A 417 SITE 1 IMP 6 ASN A 38 THR A 129 ARG A 143 GLN A 224 SITE 2 IMP 6 THR A 239 VAL A 273 SITE 1 ASP 3 ARG A 305 THR A 301 ARG A 303 SITE 1 AC1 5 ASP A 13 GLY A 40 GDP A 432 HDA A 437 SITE 2 AC1 5 PGS A 440 SITE 1 AC2 21 ASP A 13 GLU A 14 GLY A 15 LYS A 16 SITE 2 AC2 21 GLY A 17 GLY A 40 HIS A 41 THR A 42 SITE 3 AC2 21 ARG A 305 LYS A 331 ASP A 333 SER A 414 SITE 4 AC2 21 GLY A 416 PRO A 417 MG A 435 HDA A 437 SITE 5 AC2 21 PGS A 440 HOH A 502 HOH A 616 HOH A 646 SITE 6 AC2 21 HOH A 951 SITE 1 AC3 13 ASP A 13 ASN A 38 GLY A 40 THR A 129 SITE 2 AC3 13 GLY A 298 ALA A 299 THR A 300 THR A 301 SITE 3 AC3 13 ARG A 303 ARG A 305 GDP A 432 MG A 435 SITE 4 AC3 13 PGS A 440 SITE 1 AC4 26 TRP A 11 GLY A 12 ASP A 13 LYS A 16 SITE 2 AC4 26 ASN A 38 ALA A 39 GLY A 40 HIS A 41 SITE 3 AC4 26 GLY A 127 THR A 128 THR A 129 ARG A 143 SITE 4 AC4 26 ALA A 223 GLN A 224 VAL A 238 THR A 239 SITE 5 AC4 26 VAL A 273 GLY A 274 ARG A 303 GDP A 432 SITE 6 AC4 26 MG A 435 HDA A 437 HOH A 636 HOH A 699 SITE 7 AC4 26 HOH A 716 HOH A 732 CRYST1 80.540 80.540 158.150 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012416 0.007168 0.000000 0.00000 SCALE2 0.000000 0.014337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006323 0.00000