HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-DEC-02 1NI9 TITLE 2.0 A STRUCTURE OF GLYCEROL METABOLISM PROTEIN FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN GLPX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLPX OR B3925; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, TWO DOMAIN STRUCTURE OF TWO ALPHA/BETA FOLDS, KEYWDS 2 EXTENDED BETA SHEETS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.SANISHVILI,J.BRUNZELLE,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 14-FEB-24 1NI9 1 REMARK SEQADV REVDAT 3 10-FEB-09 1NI9 1 VERSN JRNL REVDAT 2 18-JAN-05 1NI9 1 AUTHOR KEYWDS REMARK REVDAT 1 15-JUL-03 1NI9 0 JRNL AUTH G.BROWN,A.SINGER,V.V.LUNIN,M.PROUDFOOT,T.SKARINA,R.FLICK, JRNL AUTH 2 S.KOCHINYAN,R.SANISHVILI,A.JOACHIMIAK,A.M.EDWARDS, JRNL AUTH 3 A.SAVCHENKO,A.F.YAKUNIN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE TYPE II JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATASE GLPX FROM ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 284 3784 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19073594 JRNL DOI 10.1074/JBC.M808186200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 20446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1224 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -2.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2218 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2182 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3002 ; 1.895 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5036 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2436 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 412 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 443 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2587 ; 0.249 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1548 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 86 ; 0.330 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1441 ; 1.001 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2310 ; 1.752 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 777 ; 2.672 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 692 ; 4.356 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8778 10.8234 46.5481 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.0177 REMARK 3 T33: 0.0284 T12: -0.0089 REMARK 3 T13: 0.0000 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4422 L22: 0.2659 REMARK 3 L33: 1.2946 L12: 0.0502 REMARK 3 L13: -0.5558 L23: -0.2161 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0723 S13: -0.0499 REMARK 3 S21: -0.0576 S22: -0.0051 S23: 0.0357 REMARK 3 S31: 0.0570 S32: -0.0897 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2304 11.8955 50.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.0523 T22: 0.0490 REMARK 3 T33: 0.0788 T12: -0.0061 REMARK 3 T13: -0.0120 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3602 L22: 0.0511 REMARK 3 L33: 1.0261 L12: 0.2047 REMARK 3 L13: -0.5566 L23: -0.2472 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.0322 S13: -0.0007 REMARK 3 S21: -0.0125 S22: -0.0072 S23: -0.0113 REMARK 3 S31: 0.0237 S32: -0.0373 S33: -0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-02; 19-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9795; 1.0332 REMARK 200 MONOCHROMATOR : SAGITTALLY FOCUSING DOUBLE REMARK 200 CRYSTAL SI(111); SAGITTALLY REMARK 200 FOCUSING DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRROR; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE; CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.66000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.87000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.72650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.93500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.72650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.80500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.72650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.93500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.72650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 128.80500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.87000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE AUTHORS STATE THE REMARK 300 BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 60 REMARK 465 ASP A 61 REMARK 465 GLU A 62 REMARK 465 ARG A 91 REMARK 465 MET A 92 REMARK 465 THR A 93 REMARK 465 ALA A 94 REMARK 465 MET A 95 REMARK 465 GLY A 96 REMARK 465 PRO A 165 REMARK 465 ARG A 166 REMARK 465 ARG A 235 REMARK 465 HIS A 236 REMARK 465 ASP A 237 REMARK 465 VAL A 238 REMARK 465 LYS A 239 REMARK 465 GLY A 240 REMARK 465 ASP A 241 REMARK 465 ASN A 242 REMARK 465 GLU A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 ARG A 246 REMARK 465 ARG A 247 REMARK 465 ILE A 248 REMARK 465 GLY A 249 REMARK 465 GLU A 250 REMARK 465 GLN A 251 REMARK 465 GLU A 252 REMARK 465 LEU A 253 REMARK 465 ALA A 254 REMARK 465 ARG A 255 REMARK 465 CYS A 256 REMARK 465 LYS A 257 REMARK 465 ALA A 258 REMARK 465 MET A 259 REMARK 465 LYS A 327 REMARK 465 ASP A 328 REMARK 465 PRO A 329 REMARK 465 GLU A 330 REMARK 465 MET A 331 REMARK 465 GLN A 332 REMARK 465 VAL A 333 REMARK 465 HIS A 334 REMARK 465 ILE A 335 REMARK 465 LEU A 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CD CE NZ REMARK 470 GLU A 59 CB CG CD OE1 OE2 REMARK 470 THR A 90 OG1 CG2 REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LYS A 297 CE NZ REMARK 470 ARG A 326 CA C O CB CG CD NE REMARK 470 ARG A 326 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 313 O HOH A 468 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 188 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 199 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 316 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 317 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 134 107.49 -166.23 REMARK 500 ILE A 261 -58.87 -139.75 REMARK 500 GLU A 262 160.14 167.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5007 RELATED DB: TARGETDB DBREF 1NI9 A 1 336 UNP P0A9C9 GLPX_ECOLI 1 336 SEQADV 1NI9 GLY A -1 UNP P0A9C9 CLONING ARTIFACT SEQADV 1NI9 HIS A 0 UNP P0A9C9 CLONING ARTIFACT SEQRES 1 A 338 GLY HIS MET ARG ARG GLU LEU ALA ILE GLU PHE SER ARG SEQRES 2 A 338 VAL THR GLU SER ALA ALA LEU ALA GLY TYR LYS TRP LEU SEQRES 3 A 338 GLY ARG GLY ASP LYS ASN THR ALA ASP GLY ALA ALA VAL SEQRES 4 A 338 ASN ALA MET ARG ILE MET LEU ASN GLN VAL ASN ILE ASP SEQRES 5 A 338 GLY THR ILE VAL ILE GLY GLU GLY GLU ILE ASP GLU ALA SEQRES 6 A 338 PRO MET LEU TYR ILE GLY GLU LYS VAL GLY THR GLY ARG SEQRES 7 A 338 GLY ASP ALA VAL ASP ILE ALA VAL ASP PRO ILE GLU GLY SEQRES 8 A 338 THR ARG MET THR ALA MET GLY GLN ALA ASN ALA LEU ALA SEQRES 9 A 338 VAL LEU ALA VAL GLY ASP LYS GLY CYS PHE LEU ASN ALA SEQRES 10 A 338 PRO ASP MET TYR MET GLU LYS LEU ILE VAL GLY PRO GLY SEQRES 11 A 338 ALA LYS GLY THR ILE ASP LEU ASN LEU PRO LEU ALA ASP SEQRES 12 A 338 ASN LEU ARG ASN VAL ALA ALA ALA LEU GLY LYS PRO LEU SEQRES 13 A 338 SER GLU LEU THR VAL THR ILE LEU ALA LYS PRO ARG HIS SEQRES 14 A 338 ASP ALA VAL ILE ALA GLU MET GLN GLN LEU GLY VAL ARG SEQRES 15 A 338 VAL PHE ALA ILE PRO ASP GLY ASP VAL ALA ALA SER ILE SEQRES 16 A 338 LEU THR CYS MET PRO ASP SER GLU VAL ASP VAL LEU TYR SEQRES 17 A 338 GLY ILE GLY GLY ALA PRO GLU GLY VAL VAL SER ALA ALA SEQRES 18 A 338 VAL ILE ARG ALA LEU ASP GLY ASP MET ASN GLY ARG LEU SEQRES 19 A 338 LEU ALA ARG HIS ASP VAL LYS GLY ASP ASN GLU GLU ASN SEQRES 20 A 338 ARG ARG ILE GLY GLU GLN GLU LEU ALA ARG CYS LYS ALA SEQRES 21 A 338 MET GLY ILE GLU ALA GLY LYS VAL LEU ARG LEU GLY ASP SEQRES 22 A 338 MET ALA ARG SER ASP ASN VAL ILE PHE SER ALA THR GLY SEQRES 23 A 338 ILE THR LYS GLY ASP LEU LEU GLU GLY ILE SER ARG LYS SEQRES 24 A 338 GLY ASN ILE ALA THR THR GLU THR LEU LEU ILE ARG GLY SEQRES 25 A 338 LYS SER ARG THR ILE ARG ARG ILE GLN SER ILE HIS TYR SEQRES 26 A 338 LEU ASP ARG LYS ASP PRO GLU MET GLN VAL HIS ILE LEU HET SO4 A 400 5 HET SO4 A 401 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *141(H2 O) HELIX 1 1 ARG A 2 GLU A 4 5 3 HELIX 2 2 LEU A 5 ARG A 26 1 22 HELIX 3 3 ASP A 28 ASN A 45 1 18 HELIX 4 4 GLY A 126 LYS A 130 5 5 HELIX 5 5 PRO A 138 LEU A 150 1 13 HELIX 6 6 PRO A 153 GLU A 156 5 4 HELIX 7 7 HIS A 167 LEU A 177 1 11 HELIX 8 8 GLY A 187 MET A 197 1 11 HELIX 9 9 ALA A 211 LEU A 224 1 14 HELIX 10 10 LEU A 269 ALA A 273 1 5 SHEET 1 A 7 THR A 314 TYR A 323 0 SHEET 2 A 7 ILE A 300 ARG A 309 -1 N THR A 305 O ILE A 318 SHEET 3 A 7 VAL A 278 GLY A 284 -1 N ALA A 282 O LEU A 306 SHEET 4 A 7 LEU A 101 ASP A 108 -1 N VAL A 106 O ILE A 279 SHEET 5 A 7 ALA A 79 GLU A 88 -1 N GLU A 88 O LEU A 101 SHEET 6 A 7 ASP A 50 ILE A 55 1 N THR A 52 O ILE A 82 SHEET 7 A 7 LYS A 71 VAL A 72 -1 O VAL A 72 N GLY A 51 SHEET 1 B 3 THR A 314 TYR A 323 0 SHEET 2 B 3 ILE A 300 ARG A 309 -1 N THR A 305 O ILE A 318 SHEET 3 B 3 SER A 295 LYS A 297 -1 N SER A 295 O THR A 302 SHEET 1 C 6 ARG A 180 ILE A 184 0 SHEET 2 C 6 THR A 158 LEU A 162 1 N VAL A 159 O ARG A 180 SHEET 3 C 6 VAL A 204 GLY A 210 1 O VAL A 204 N THR A 160 SHEET 4 C 6 TYR A 119 VAL A 125 -1 N LYS A 122 O GLY A 207 SHEET 5 C 6 ASP A 227 LEU A 233 -1 O ARG A 231 N GLU A 121 SHEET 6 C 6 VAL A 266 ARG A 268 -1 O LEU A 267 N GLY A 230 CISPEP 1 GLY A -1 HIS A 0 0 -15.82 CISPEP 2 GLY A 260 ILE A 261 0 -0.14 SITE 1 AC1 6 HIS A 0 ARG A 2 ARG A 3 GLU A 4 SITE 2 AC1 6 ARG A 309 LYS A 311 SITE 1 AC2 6 ARG A 11 ARG A 309 SER A 312 THR A 314 SITE 2 AC2 6 ARG A 316 HOH A 425 CRYST1 61.453 61.453 171.740 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005823 0.00000