HEADER OXIDOREDUCTASE (NITRIC OXIDE(A)) 03-JUL-95 1NIB
TITLE THE STRUCTURE OF CU-NITRITE REDUCTASE FROM ACHROMOBACTER CYCLOCLASTES
TITLE 2 AT FIVE PH VALUES, WITH NITRITE BOUND AND WITH TYPE II CU DEPLETED
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NITRITE REDUCTASE;
COMPND 3 CHAIN: A, B, C;
COMPND 4 EC: 1.7.99.3;
COMPND 5 OTHER_DETAILS: PH 6.8 ("68")
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES;
SOURCE 3 ORGANISM_TAXID: 223
KEYWDS OXIDOREDUCTASE (NITRIC OXIDE(A))
EXPDTA X-RAY DIFFRACTION
AUTHOR E.T.ADMAN,J.W.GODDEN,S.TURLEY
REVDAT 3 14-FEB-24 1NIB 1 REMARK LINK
REVDAT 2 24-FEB-09 1NIB 1 VERSN
REVDAT 1 07-DEC-95 1NIB 0
JRNL AUTH E.T.ADMAN,J.W.GODDEN,S.TURLEY
JRNL TITL THE STRUCTURE OF COPPER-NITRITE REDUCTASE FROM ACHROMOBACTER
JRNL TITL 2 CYCLOCLASTES AT FIVE PH VALUES, WITH NO2- BOUND AND WITH
JRNL TITL 3 TYPE II COPPER DEPLETED.
JRNL REF J.BIOL.CHEM. V. 270 27458 1995
JRNL REFN ISSN 0021-9258
JRNL PMID 7499203
JRNL DOI 10.1074/JBC.270.46.27458
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH J.W.GODDEN,S.TURLEY,D.C.TELLER,E.T.ADMAN,M.Y.LIU,W.J.PAYNE,
REMARK 1 AUTH 2 J.LEGALL
REMARK 1 TITL THE 2.3 ANGSTROM X-RAY STRUCTURE OF NITRITE REDUCTASE FROM
REMARK 1 TITL 2 ACHROMOBACTER CYCLOCLASTES
REMARK 1 REF SCIENCE V. 253 438 1991
REMARK 1 REFN ISSN 0036-8075
REMARK 1 REFERENCE 2
REMARK 1 AUTH F.F.FENDERSON,S.KUMAR,E.T.ADMAN,M.-Y.LIU,W.J.PAYNE,J.LEGALL
REMARK 1 TITL AMINO ACID SEQUENCE OF NITRITE REDUCTASE: A COPPER PROTEIN
REMARK 1 TITL 2 FROM ACHROMOBACTER CYCLOCLASTES
REMARK 1 REF BIOCHEMISTRY V. 30 7180 1991
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 3
REMARK 1 AUTH S.TURLEY,E.T.ADMAN,L.C.SIEKER,M.-Y.LIU,W.J.PAYNE,J.LEGALL
REMARK 1 TITL CRYSTALLIZATION OF NITRITE REDUCTASE FROM ACHROMOBACTER
REMARK 1 TITL 2 CYCLOCLASTES
REMARK 1 REF J.MOL.BIOL. V. 200 417 1988
REMARK 1 REFN ISSN 0022-2836
REMARK 2
REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.0
REMARK 3 NUMBER OF REFLECTIONS : 29825
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING SET) : 0.155
REMARK 3 FREE R VALUE : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 7669
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 6
REMARK 3 SOLVENT ATOMS : 531
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.900
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1NIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000175297.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : 6.8
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : NULL
REMARK 200 RADIATION SOURCE : NULL
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL
REMARK 200 WAVELENGTH OR RANGE (A) : NULL
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : NULL
REMARK 200 DETECTOR MANUFACTURER : NULL
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37413
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600
REMARK 200 RESOLUTION RANGE LOW (A) : NULL
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: NULL
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: X-PLOR
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 58.81
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.8
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.78000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.85000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.68000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.85000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.78000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.68000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: THE TRIMER PRESENTED IN THIS ENTRY IS THE ASYMMETRIC UNIT.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 12400 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 33100 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 1
REMARK 465 ALA A 2
REMARK 465 GLY A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 PRO A 6
REMARK 465 VAL A 7
REMARK 465 ALA B 1
REMARK 465 ALA B 2
REMARK 465 GLY B 3
REMARK 465 ALA B 4
REMARK 465 ALA B 5
REMARK 465 PRO B 6
REMARK 465 VAL B 7
REMARK 465 ALA C 1
REMARK 465 ALA C 2
REMARK 465 GLY C 3
REMARK 465 ALA C 4
REMARK 465 ALA C 5
REMARK 465 PRO C 6
REMARK 465 VAL C 7
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 166 CE NZ
REMARK 470 GLU A 189 CD OE1 OE2
REMARK 470 GLU A 197 CG CD OE1 OE2
REMARK 470 LYS A 208 CG CD CE NZ
REMARK 470 ASP A 230 CG OD1 OD2
REMARK 470 ASP B 8 CB CG OD1 OD2
REMARK 470 LYS B 166 CE NZ
REMARK 470 GLU B 189 CD OE1 OE2
REMARK 470 GLU B 197 CG CD OE1 OE2
REMARK 470 LYS B 208 CG CD CE NZ
REMARK 470 ASP B 230 CG OD1 OD2
REMARK 470 ASP C 8 CB CG OD1 OD2
REMARK 470 LYS C 166 CE NZ
REMARK 470 GLU C 189 CD OE1 OE2
REMARK 470 GLU C 197 CG CD OE1 OE2
REMARK 470 LYS C 208 CG CD CE NZ
REMARK 470 ASP C 230 CG OD1 OD2
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 NOTE THAT A NUMBER OF WATERS HAVE OCCUPANCY GREATER THAN
REMARK 600 1.0.
REMARK 615
REMARK 615 ZERO OCCUPANCY ATOM
REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 615 M RES C SSEQI
REMARK 615 HOH A 625
REMARK 615 HOH B 538
REMARK 615 HOH B 623
REMARK 615 HOH C 4295
REMARK 615 HOH C 4327
REMARK 615 HOH C 4361
REMARK 615 HOH C 4396
REMARK 615 HOH C 4417
REMARK 615 HOH C 4455
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 501 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 95 ND1
REMARK 620 2 CYS A 136 SG 134.1
REMARK 620 3 HIS A 145 ND1 97.7 98.1
REMARK 620 4 MET A 150 SD 86.7 109.1 137.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 502 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 100 NE2
REMARK 620 2 HIS A 135 NE2 103.1
REMARK 620 3 HOH A 503 O 104.8 108.1
REMARK 620 4 HIS B 306 NE2 98.9 118.4 120.5
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU C 502 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 306 NE2
REMARK 620 2 HOH A 504 O 106.1
REMARK 620 3 HIS C 100 NE2 96.9 114.3
REMARK 620 4 HIS C 135 NE2 109.6 118.4 109.3
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU B 501 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 95 ND1
REMARK 620 2 CYS B 136 SG 135.4
REMARK 620 3 HIS B 145 ND1 100.6 101.3
REMARK 620 4 MET B 150 SD 91.2 103.5 130.0
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU B 502 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 100 NE2
REMARK 620 2 HIS B 135 NE2 107.9
REMARK 620 3 HOH B 503 O 103.4 100.5
REMARK 620 4 HIS C 306 NE2 100.5 112.7 130.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU C 501 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS C 95 ND1
REMARK 620 2 CYS C 136 SG 138.1
REMARK 620 3 HIS C 145 ND1 102.0 98.6
REMARK 620 4 MET C 150 SD 88.0 104.2 132.4
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE I CU (A 501) BINDING SITE IN CHAIN A
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE II CU (A 502) BINDING SITE IN CHAIN A
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE I CU (B 501) BINDING SITE IN CHAIN B
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE II CU (B 502) BINDING SITE IN CHAIN B
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC1
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE I CU (C 501) BINDING SITE IN CHAIN C
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC2
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE II CU (C 502) BINDING SITE IN CHAIN C
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 502
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1NIA RELATED DB: PDB
REMARK 900 PH 6.2
REMARK 900 RELATED ID: 1NIC RELATED DB: PDB
REMARK 900 PH 6.0
REMARK 900 RELATED ID: 1NID RELATED DB: PDB
REMARK 900 PH 5.4 NITRITE SOAKED
REMARK 900 RELATED ID: 1NIE RELATED DB: PDB
REMARK 900 PH 5.0
REMARK 900 RELATED ID: 1NIF RELATED DB: PDB
REMARK 900 PH 5.4 TYPE II COPPER DEPLETED
REMARK 900 RELATED ID: 2NRD RELATED DB: PDB
REMARK 900 PH 5.4
DBREF 1NIB A 1 340 UNP P25006 NIR_ACHCY 39 378
DBREF 1NIB B 1 340 UNP P25006 NIR_ACHCY 39 378
DBREF 1NIB C 1 340 UNP P25006 NIR_ACHCY 39 378
SEQRES 1 A 340 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO
SEQRES 2 A 340 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS
SEQRES 3 A 340 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL
SEQRES 4 A 340 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE
SEQRES 5 A 340 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN
SEQRES 6 A 340 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN
SEQRES 7 A 340 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN
SEQRES 8 A 340 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY
SEQRES 9 A 340 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY
SEQRES 10 A 340 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY
SEQRES 11 A 340 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO
SEQRES 12 A 340 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL
SEQRES 13 A 340 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO
SEQRES 14 A 340 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP
SEQRES 15 A 340 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS
SEQRES 16 A 340 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS
SEQRES 17 A 340 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN
SEQRES 18 A 340 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR
SEQRES 19 A 340 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN
SEQRES 20 A 340 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS
SEQRES 21 A 340 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO
SEQRES 22 A 340 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY
SEQRES 23 A 340 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY
SEQRES 24 A 340 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE
SEQRES 25 A 340 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU
SEQRES 26 A 340 TRP ASN ASP ASP LEU MET THR SER VAL VAL LYS PRO ALA
SEQRES 27 A 340 SER MET
SEQRES 1 B 340 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO
SEQRES 2 B 340 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS
SEQRES 3 B 340 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL
SEQRES 4 B 340 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE
SEQRES 5 B 340 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN
SEQRES 6 B 340 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN
SEQRES 7 B 340 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN
SEQRES 8 B 340 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY
SEQRES 9 B 340 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY
SEQRES 10 B 340 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY
SEQRES 11 B 340 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO
SEQRES 12 B 340 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL
SEQRES 13 B 340 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO
SEQRES 14 B 340 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP
SEQRES 15 B 340 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS
SEQRES 16 B 340 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS
SEQRES 17 B 340 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN
SEQRES 18 B 340 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR
SEQRES 19 B 340 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN
SEQRES 20 B 340 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS
SEQRES 21 B 340 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO
SEQRES 22 B 340 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY
SEQRES 23 B 340 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY
SEQRES 24 B 340 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE
SEQRES 25 B 340 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU
SEQRES 26 B 340 TRP ASN ASP ASP LEU MET THR SER VAL VAL LYS PRO ALA
SEQRES 27 B 340 SER MET
SEQRES 1 C 340 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO
SEQRES 2 C 340 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS
SEQRES 3 C 340 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL
SEQRES 4 C 340 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE
SEQRES 5 C 340 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN
SEQRES 6 C 340 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN
SEQRES 7 C 340 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN
SEQRES 8 C 340 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY
SEQRES 9 C 340 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY
SEQRES 10 C 340 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY
SEQRES 11 C 340 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO
SEQRES 12 C 340 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL
SEQRES 13 C 340 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO
SEQRES 14 C 340 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP
SEQRES 15 C 340 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS
SEQRES 16 C 340 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS
SEQRES 17 C 340 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN
SEQRES 18 C 340 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR
SEQRES 19 C 340 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN
SEQRES 20 C 340 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS
SEQRES 21 C 340 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO
SEQRES 22 C 340 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY
SEQRES 23 C 340 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY
SEQRES 24 C 340 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE
SEQRES 25 C 340 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU
SEQRES 26 C 340 TRP ASN ASP ASP LEU MET THR SER VAL VAL LYS PRO ALA
SEQRES 27 C 340 SER MET
HET CU A 501 1
HET CU A 502 1
HET CU B 501 1
HET CU B 502 1
HET CU C 501 1
HET CU C 502 1
HETNAM CU COPPER (II) ION
FORMUL 4 CU 6(CU 2+)
FORMUL 10 HOH *531(H2 O)
HELIX 1 1 ILE A 9 THR A 11 5 3
HELIX 2 2 ALA A 105 GLY A 108 5 4
HELIX 3 3 VAL A 142 SER A 148 1 7
HELIX 4 4 PRO A 199 THR A 212 1 14
HELIX 5 5 GLY A 229 HIS A 231 5 3
HELIX 6 6 LEU A 308 PHE A 312 1 5
HELIX 7 7 ILE B 9 THR B 11 5 3
HELIX 8 8 ALA B 105 GLY B 108 5 4
HELIX 9 9 VAL B 142 VAL B 146 1 5
HELIX 10 10 PRO B 199 THR B 212 1 14
HELIX 11 11 GLY B 229 HIS B 231 5 3
HELIX 12 12 LEU B 308 PHE B 312 1 5
HELIX 13 13 ILE C 9 THR C 11 5 3
HELIX 14 14 ALA C 105 LEU C 111 5 7
HELIX 15 15 VAL C 142 THR C 147 1 6
HELIX 16 16 PRO C 199 THR C 212 1 14
HELIX 17 17 GLY C 229 HIS C 231 5 3
HELIX 18 18 LEU C 308 PHE C 312 1 5
SHEET 1 A 5 ARG A 14 LYS A 16 0
SHEET 2 A 5 VAL A 38 ILE A 45 1 N VAL A 38 O VAL A 15
SHEET 3 A 5 TYR A 80 ASN A 87 1 N TYR A 80 O VAL A 39
SHEET 4 A 5 GLU A 118 LYS A 125 -1 N PHE A 124 O VAL A 81
SHEET 5 A 5 MET B 331 VAL B 335 -1 N VAL B 335 O THR A 121
SHEET 1 B 2 ILE A 45 VAL A 51 0
SHEET 2 B 2 GLU A 58 PHE A 64 -1 N THR A 63 O GLU A 46
SHEET 1 C 3 MET A 73 HIS A 76 0
SHEET 2 C 3 ASN A 151 LEU A 157 1 N MET A 155 O MET A 73
SHEET 3 C 3 GLY A 130 HIS A 135 -1 N TYR A 134 O GLY A 152
SHEET 1 D 4 LYS A 174 GLY A 179 0
SHEET 2 D 4 ARG A 240 GLN A 247 1 N LEU A 242 O LYS A 174
SHEET 3 D 4 THR A 287 THR A 294 -1 N TYR A 293 O VAL A 241
SHEET 4 D 4 TYR A 263 TRP A 265 -1 N TRP A 265 O ALA A 290
SHEET 1 E 2 GLU A 180 PHE A 183 0
SHEET 2 E 2 HIS A 217 PHE A 220 -1 N VAL A 219 O GLN A 181
SHEET 1 F 5 LEU A 233 ALA A 236 0
SHEET 2 F 5 ALA A 317 THR A 323 1 N LYS A 321 O LEU A 233
SHEET 3 F 5 GLY A 299 ASN A 305 -1 N TYR A 303 O GLY A 318
SHEET 4 F 5 THR A 252 ILE A 257 -1 N ILE A 257 O ALA A 302
SHEET 5 F 5 THR A 280 ILE A 283 -1 N ILE A 283 O THR A 252
SHEET 1 G 5 MET A 331 SER A 333 0
SHEET 2 G 5 GLU C 118 LYS C 125 -1 N ARG C 123 O THR A 332
SHEET 3 G 5 TYR C 80 ASN C 87 -1 N ASN C 87 O GLU C 118
SHEET 4 G 5 VAL C 38 ILE C 45 1 N VAL C 39 O TYR C 80
SHEET 5 G 5 ARG C 14 LYS C 16 1 N VAL C 15 O VAL C 38
SHEET 1 H 5 ARG B 14 LYS B 16 0
SHEET 2 H 5 VAL B 38 ILE B 45 1 N VAL B 38 O VAL B 15
SHEET 3 H 5 TYR B 80 ASN B 87 1 N TYR B 80 O VAL B 39
SHEET 4 H 5 GLU B 118 LYS B 125 -1 N PHE B 124 O VAL B 81
SHEET 5 H 5 MET C 331 VAL C 335 -1 N VAL C 335 O THR B 121
SHEET 1 I 2 ILE B 45 VAL B 51 0
SHEET 2 I 2 GLU B 58 PHE B 64 -1 N THR B 63 O GLU B 46
SHEET 1 J 3 LEU B 72 HIS B 76 0
SHEET 2 J 3 ASN B 151 LEU B 157 1 N ALA B 153 O MET B 73
SHEET 3 J 3 GLY B 130 HIS B 135 -1 N TYR B 134 O GLY B 152
SHEET 1 K 4 LYS B 174 GLY B 179 0
SHEET 2 K 4 ARG B 240 GLN B 247 1 N LEU B 242 O LYS B 174
SHEET 3 K 4 THR B 287 THR B 294 -1 N TYR B 293 O VAL B 241
SHEET 4 K 4 TYR B 263 TRP B 265 -1 N TRP B 265 O ALA B 290
SHEET 1 L 2 GLU B 180 PHE B 183 0
SHEET 2 L 2 HIS B 217 PHE B 220 -1 N VAL B 219 O GLN B 181
SHEET 1 M 4 LEU B 233 ALA B 236 0
SHEET 2 M 4 ALA B 317 THR B 323 1 N LYS B 321 O LEU B 233
SHEET 3 M 4 GLY B 299 ASN B 305 -1 N TYR B 303 O GLY B 318
SHEET 4 M 4 PRO B 254 ILE B 257 -1 N ILE B 257 O ALA B 302
SHEET 1 N 2 ILE C 45 VAL C 51 0
SHEET 2 N 2 GLU C 58 PHE C 64 -1 N THR C 63 O GLU C 46
SHEET 1 O 3 MET C 73 HIS C 76 0
SHEET 2 O 3 ASN C 151 LEU C 157 1 N MET C 155 O MET C 73
SHEET 3 O 3 GLY C 130 HIS C 135 -1 N TYR C 134 O GLY C 152
SHEET 1 P 4 LYS C 174 GLY C 179 0
SHEET 2 P 4 ARG C 240 GLN C 247 1 N LEU C 242 O LYS C 174
SHEET 3 P 4 THR C 287 THR C 294 -1 N TYR C 293 O VAL C 241
SHEET 4 P 4 TYR C 263 TRP C 265 -1 N TRP C 265 O ALA C 290
SHEET 1 Q 2 GLU C 180 PHE C 183 0
SHEET 2 Q 2 HIS C 217 PHE C 220 -1 N VAL C 219 O GLN C 181
SHEET 1 R 4 LEU C 233 ALA C 236 0
SHEET 2 R 4 ALA C 317 THR C 323 1 N LYS C 321 O LEU C 233
SHEET 3 R 4 GLY C 299 ASN C 305 -1 N TYR C 303 O GLY C 318
SHEET 4 R 4 PRO C 254 ILE C 257 -1 N ILE C 257 O ALA C 302
LINK ND1 HIS A 95 CU CU A 501 1555 1555 2.04
LINK NE2 HIS A 100 CU CU A 502 1555 1555 2.00
LINK NE2 HIS A 135 CU CU A 502 1555 1555 1.99
LINK SG CYS A 136 CU CU A 501 1555 1555 2.11
LINK ND1 HIS A 145 CU CU A 501 1555 1555 1.94
LINK SD MET A 150 CU CU A 501 1555 1555 2.53
LINK NE2 HIS A 306 CU CU C 502 1555 1555 2.04
LINK CU CU A 502 O HOH A 503 1555 1555 2.11
LINK CU CU A 502 NE2 HIS B 306 1555 1555 1.95
LINK O HOH A 504 CU CU C 502 1555 1555 1.96
LINK ND1 HIS B 95 CU CU B 501 1555 1555 2.00
LINK NE2 HIS B 100 CU CU B 502 1555 1555 2.00
LINK NE2 HIS B 135 CU CU B 502 1555 1555 2.00
LINK SG CYS B 136 CU CU B 501 1555 1555 2.21
LINK ND1 HIS B 145 CU CU B 501 1555 1555 1.97
LINK SD MET B 150 CU CU B 501 1555 1555 2.47
LINK CU CU B 502 O HOH B 503 1555 1555 2.00
LINK CU CU B 502 NE2 HIS C 306 1555 1555 2.01
LINK ND1 HIS C 95 CU CU C 501 1555 1555 1.93
LINK NE2 HIS C 100 CU CU C 502 1555 1555 1.96
LINK NE2 HIS C 135 CU CU C 502 1555 1555 2.04
LINK SG CYS C 136 CU CU C 501 1555 1555 2.15
LINK ND1 HIS C 145 CU CU C 501 1555 1555 2.08
LINK SD MET C 150 CU CU C 501 1555 1555 2.46
CISPEP 1 PRO A 22 PRO A 23 0 -0.23
CISPEP 2 VAL A 68 PRO A 69 0 0.15
CISPEP 3 PRO B 22 PRO B 23 0 1.47
CISPEP 4 VAL B 68 PRO B 69 0 3.53
CISPEP 5 PRO C 22 PRO C 23 0 -1.59
CISPEP 6 VAL C 68 PRO C 69 0 -0.03
SITE 1 AC1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150
SITE 1 AC2 3 HIS A 100 HIS A 135 HOH A 503
SITE 1 BC1 4 HIS B 95 CYS B 136 HIS B 145 MET B 150
SITE 1 BC2 3 HIS B 100 HIS B 135 HOH B 503
SITE 1 CC1 4 HIS C 95 CYS C 136 HIS C 145 MET C 150
SITE 1 CC2 3 HIS C 100 HIS C 135 HOH A 504
SITE 1 AC3 4 HIS A 95 CYS A 136 HIS A 145 MET A 150
SITE 1 AC4 4 HIS A 100 HIS A 135 HOH A 503 HIS B 306
SITE 1 AC5 4 HIS B 95 CYS B 136 HIS B 145 MET B 150
SITE 1 AC6 5 ASP B 98 HIS B 100 HIS B 135 HOH B 503
SITE 2 AC6 5 HIS C 306
SITE 1 AC7 4 HIS C 95 CYS C 136 HIS C 145 MET C 150
SITE 1 AC8 5 HIS A 255 HIS A 306 HOH A 504 HIS C 100
SITE 2 AC8 5 HIS C 135
CRYST1 99.560 115.360 115.700 90.00 90.00 90.00 P 21 21 21 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010044 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008669 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008643 0.00000