HEADER OXIDOREDUCTASE (NITRIC OXIDE(A)) 03-JUL-95 1NID
TITLE THE STRUCTURE OF CU-NITRITE REDUCTASE FROM ACHROMOBACTER CYCLOCLASTES
TITLE 2 AT FIVE PH VALUES, WITH NITRITE BOUND AND WITH TYPE II CU DEPLETED
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NITRITE REDUCTASE;
COMPND 3 CHAIN: A;
COMPND 4 EC: 1.7.99.3;
COMPND 5 OTHER_DETAILS: PH 5.4 ("NT1") NITRITE SOAKED
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES;
SOURCE 3 ORGANISM_TAXID: 223
KEYWDS OXIDOREDUCTASE (NITRIC OXIDE(A))
EXPDTA X-RAY DIFFRACTION
AUTHOR E.T.ADMAN,J.W.GODDEN,S.TURLEY
REVDAT 4 14-FEB-24 1NID 1 REMARK LINK
REVDAT 3 13-JUL-11 1NID 1 VERSN
REVDAT 2 24-FEB-09 1NID 1 VERSN
REVDAT 1 07-DEC-95 1NID 0
JRNL AUTH E.T.ADMAN,J.W.GODDEN,S.TURLEY
JRNL TITL THE STRUCTURE OF COPPER-NITRITE REDUCTASE FROM ACHROMOBACTER
JRNL TITL 2 CYCLOCLASTES AT FIVE PH VALUES, WITH NO2- BOUND AND WITH
JRNL TITL 3 TYPE II COPPER DEPLETED.
JRNL REF J.BIOL.CHEM. V. 270 27458 1995
JRNL REFN ISSN 0021-9258
JRNL PMID 7499203
JRNL DOI 10.1074/JBC.270.46.27458
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH J.W.GODDEN,S.TURLEY,D.C.TELLER,E.T.ADMAN,M.Y.LIU,W.J.PAYNE,
REMARK 1 AUTH 2 J.LEGALL
REMARK 1 TITL THE 2.3 ANGSTROM X-RAY STRUCTURE OF NITRITE REDUCTASE FROM
REMARK 1 TITL 2 ACHROMOBACTER CYCLOCLASTES
REMARK 1 REF SCIENCE V. 253 438 1991
REMARK 1 REFN ISSN 0036-8075
REMARK 1 REFERENCE 2
REMARK 1 AUTH F.F.FENDERSON,S.KUMAR,E.T.ADMAN,M.-Y.LIU,W.J.PAYNE,J.LEGALL
REMARK 1 TITL AMINO ACID SEQUENCE OF NITRITE REDUCTASE: A COPPER PROTEIN
REMARK 1 TITL 2 FROM ACHROMOBACTER CYCLOCLASTES
REMARK 1 REF BIOCHEMISTRY V. 30 7180 1991
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 3
REMARK 1 AUTH S.TURLEY,E.T.ADMAN,L.C.SIEKER,M.-Y.LIU,W.J.PAYNE,J.LEGALL
REMARK 1 TITL CRYSTALLIZATION OF NITRITE REDUCTASE FROM ACHROMOBACTER
REMARK 1 TITL 2 CYCLOCLASTES
REMARK 1 REF J.MOL.BIOL. V. 200 417 1988
REMARK 1 REFN ISSN 0022-2836
REMARK 2
REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0
REMARK 3 NUMBER OF REFLECTIONS : 14536
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING SET) : 0.149
REMARK 3 FREE R VALUE : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2575
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 5
REMARK 3 SOLVENT ATOMS : 172
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.021
REMARK 3 BOND ANGLES (DEGREES) : 2.200
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HIS 306 HAS SOMEWHAT DISTORTED
REMARK 3 GEOMETRY.
REMARK 4
REMARK 4 1NID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000175299.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : 5.4
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : NULL
REMARK 200 RADIATION SOURCE : NULL
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL
REMARK 200 WAVELENGTH OR RANGE (A) : NULL
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : NULL
REMARK 200 DETECTOR MANUFACTURER : NULL
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15556
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200
REMARK 200 RESOLUTION RANGE LOW (A) : NULL
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: NULL
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: X-PLOR
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 41.13
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.4
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290 5555 Z,X,Y
REMARK 290 6555 Z+1/2,-X+1/2,-Y
REMARK 290 7555 -Z+1/2,-X,Y+1/2
REMARK 290 8555 -Z,X+1/2,-Y+1/2
REMARK 290 9555 Y,Z,X
REMARK 290 10555 -Y,Z+1/2,-X+1/2
REMARK 290 11555 Y+1/2,-Z+1/2,-X
REMARK 290 12555 -Y+1/2,-Z,X+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.80000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.80000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.80000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.80000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.80000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.80000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 48.80000
REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 48.80000
REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 48.80000
REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 48.80000
REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 48.80000
REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 48.80000
REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 48.80000
REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 48.80000
REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 48.80000
REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 48.80000
REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 48.80000
REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 48.80000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA,PQS
REMARK 350 TOTAL BURIED SURFACE AREA: 13270 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 33710 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1251 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 1
REMARK 465 ALA A 2
REMARK 465 GLY A 3
REMARK 465 ALA A 4
REMARK 465 ALA A 5
REMARK 465 PRO A 6
REMARK 465 VAL A 7
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 ASP A 8 CB CG OD1 OD2
REMARK 480 LYS A 166 CE NZ
REMARK 480 GLU A 189 CD OE1 OE2
REMARK 480 GLU A 197 CG CD OE1 OE2
REMARK 480 LYS A 208 CG CD CE NZ
REMARK 480 ASP A 230 CG OD1 OD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HD22 ASN A 221 O HOH A 1221 1.40
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O LEU A 12 O HOH A 2159 11545 1.97
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES
REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES
REMARK 500 ASN A 307 N - CA - C ANGL. DEV. = -19.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 227 41.75 -105.32
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 NOTE THAT A NUMBER OF WATERS HAVE OCCUPANCY GREATER THAN
REMARK 600 1.0.
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 501 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 95 ND1
REMARK 620 2 CYS A 136 SG 132.1
REMARK 620 3 HIS A 145 ND1 98.5 104.3
REMARK 620 4 MET A 150 SD 88.7 106.1 131.0
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 502 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 100 NE2
REMARK 620 2 HIS A 135 NE2 100.0
REMARK 620 3 HIS A 306 NE2 100.8 108.0
REMARK 620 4 NO2 A 503 N 141.5 87.2 112.9
REMARK 620 5 NO2 A 503 O1 165.8 94.1 75.9 37.2
REMARK 620 6 NO2 A 503 O2 107.6 114.5 122.7 38.0 64.6
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: CU1
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE I SITE
REMARK 800
REMARK 800 SITE_IDENTIFIER: CU2
REMARK 800 EVIDENCE_CODE: AUTHOR
REMARK 800 SITE_DESCRIPTION: TYPE II SITE
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO2 A 503
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1NIA RELATED DB: PDB
REMARK 900 PH 6.2
REMARK 900 RELATED ID: 1NIB RELATED DB: PDB
REMARK 900 PH 6.8
REMARK 900 RELATED ID: 1NIC RELATED DB: PDB
REMARK 900 PH 6.0
REMARK 900 RELATED ID: 1NIE RELATED DB: PDB
REMARK 900 PH 5.0
REMARK 900 RELATED ID: 1NIF RELATED DB: PDB
REMARK 900 PH 5.4 TYPE II COPPER DEPLETED
REMARK 900 RELATED ID: 2NRD RELATED DB: PDB
REMARK 900 PH 5.4
DBREF 1NID A 1 340 UNP P25006 NIR_ACHCY 39 378
SEQRES 1 A 340 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO
SEQRES 2 A 340 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS
SEQRES 3 A 340 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL
SEQRES 4 A 340 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE
SEQRES 5 A 340 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN
SEQRES 6 A 340 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN
SEQRES 7 A 340 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN
SEQRES 8 A 340 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY
SEQRES 9 A 340 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY
SEQRES 10 A 340 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY
SEQRES 11 A 340 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO
SEQRES 12 A 340 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL
SEQRES 13 A 340 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO
SEQRES 14 A 340 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP
SEQRES 15 A 340 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS
SEQRES 16 A 340 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS
SEQRES 17 A 340 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN
SEQRES 18 A 340 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR
SEQRES 19 A 340 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN
SEQRES 20 A 340 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS
SEQRES 21 A 340 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO
SEQRES 22 A 340 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY
SEQRES 23 A 340 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY
SEQRES 24 A 340 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE
SEQRES 25 A 340 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU
SEQRES 26 A 340 TRP ASN ASP ASP LEU MET THR SER VAL VAL LYS PRO ALA
SEQRES 27 A 340 SER MET
HET CU A 501 1
HET CU A 502 1
HET NO2 A 503 3
HETNAM CU COPPER (II) ION
HETNAM NO2 NITRITE ION
FORMUL 2 CU 2(CU 2+)
FORMUL 4 NO2 N O2 1-
FORMUL 5 HOH *172(H2 O)
HELIX 1 1 ILE A 9 THR A 11 5 3
HELIX 2 2 ALA A 105 LEU A 111 5 7
HELIX 3 3 VAL A 142 SER A 148 1 7
HELIX 4 4 PRO A 199 THR A 212 1 14
HELIX 5 5 GLY A 229 HIS A 231 5 3
HELIX 6 6 LEU A 308 PHE A 312 1 5
SHEET 1 A 4 PRO A 13 LYS A 16 0
SHEET 2 A 4 ARG A 37 THR A 44 1 N VAL A 38 O PRO A 13
SHEET 3 A 4 TYR A 80 ASN A 87 1 N TYR A 80 O VAL A 39
SHEET 4 A 4 GLU A 118 LYS A 125 -1 N PHE A 124 O VAL A 81
SHEET 1 B 2 ILE A 45 VAL A 51 0
SHEET 2 B 2 GLU A 58 PHE A 64 -1 N THR A 63 O GLU A 46
SHEET 1 C 3 LEU A 72 HIS A 76 0
SHEET 2 C 3 ASN A 151 LEU A 157 1 N ALA A 153 O MET A 73
SHEET 3 C 3 GLY A 130 HIS A 135 -1 N TYR A 134 O GLY A 152
SHEET 1 D 4 LYS A 174 GLY A 179 0
SHEET 2 D 4 ARG A 240 GLN A 247 1 N LEU A 242 O LYS A 174
SHEET 3 D 4 THR A 287 THR A 294 -1 N TYR A 293 O VAL A 241
SHEET 4 D 4 TYR A 263 TRP A 265 -1 N TRP A 265 O ALA A 290
SHEET 1 E 2 GLU A 180 PHE A 183 0
SHEET 2 E 2 HIS A 217 PHE A 220 -1 N VAL A 219 O GLN A 181
SHEET 1 F 4 LEU A 233 ALA A 236 0
SHEET 2 F 4 ALA A 317 THR A 323 1 N LYS A 321 O LEU A 233
SHEET 3 F 4 GLY A 299 ASN A 305 -1 N TYR A 303 O GLY A 318
SHEET 4 F 4 PRO A 254 ILE A 257 -1 N ILE A 257 O ALA A 302
LINK ND1 HIS A 95 CU CU A 501 1555 1555 2.02
LINK NE2 HIS A 100 CU CU A 502 1555 1555 2.07
LINK NE2 HIS A 135 CU CU A 502 1555 1555 2.10
LINK SG CYS A 136 CU CU A 501 1555 1555 2.24
LINK ND1 HIS A 145 CU CU A 501 1555 1555 2.03
LINK SD MET A 150 CU CU A 501 1555 1555 2.56
LINK NE2 HIS A 306 CU CU A 502 9555 1555 2.17
LINK CU CU A 502 N NO2 A 503 1555 1555 2.70
LINK CU CU A 502 O1 NO2 A 503 1555 1555 2.53
LINK CU CU A 502 O2 NO2 A 503 1555 1555 2.16
CISPEP 1 PRO A 22 PRO A 23 0 -1.02
CISPEP 2 VAL A 68 PRO A 69 0 1.31
SITE 1 CU1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150
SITE 1 CU2 3 HIS A 100 HIS A 135 NO2 A 503
SITE 1 AC1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150
SITE 1 AC2 5 ASP A 98 HIS A 100 HIS A 135 HIS A 306
SITE 2 AC2 5 NO2 A 503
SITE 1 AC3 8 ASP A 98 HIS A 100 HIS A 135 HIS A 255
SITE 2 AC3 8 ILE A 257 HIS A 306 LEU A 308 CU A 502
CRYST1 97.600 97.600 97.600 90.00 90.00 90.00 P 21 3 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010246 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010246 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010246 0.00000