HEADER LIGASE 30-DEC-02 1NJ5 TITLE CRYSTAL STRUCTURE OF PROLYL-TRNA SYNTHETASE FROM METHANOTHERMOBACTER TITLE 2 THERMAUTOTROPHICUS BOUND TO PROLINE SULFAMOYL ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N TERMINALLY HIS TAGGED ENZYME; COMPND 5 SYNONYM: PROLYL-TRNA SYNTHETASE; PROLINE--TRNA LIGASE; PRORS; COMPND 6 EC: 6.1.1.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 187420; SOURCE 4 STRAIN: DELTA H; SOURCE 5 GENE: MTH611; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 RECA-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 OTHER_DETAILS: STRAIN SUPPLEMENTED WITH ADDITIONAL PLASMID ENCODING SOURCE 12 RARE TRNAS KEYWDS PROTEIN-AMINOACYLADENYLATE COMPLEX CLASS-II TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KAMTEKAR,W.D.KENNEDY,J.WANG,C.STATHOPOULOS,D.SOLL,T.A.STEITZ REVDAT 4 14-FEB-24 1NJ5 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1NJ5 1 VERSN REVDAT 2 24-FEB-09 1NJ5 1 VERSN REVDAT 1 04-MAR-03 1NJ5 0 JRNL AUTH S.KAMTEKAR,W.D.KENNEDY,J.WANG,C.STATHOPOULOS,D.SOLL, JRNL AUTH 2 T.A.STEITZ JRNL TITL THE STRUCTURAL BASIS OF CYSTEINE AMINOACYLATION OF TRNAPRO JRNL TITL 2 BY PROLYL-TRNA SYNTHETASES JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 1673 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12578991 JRNL DOI 10.1073/PNAS.0437911100 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 23633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2380 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3023 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 375 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.14000 REMARK 3 B22 (A**2) : 3.14000 REMARK 3 B33 (A**2) : -6.28000 REMARK 3 B12 (A**2) : 10.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.510 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 28.96 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : FI REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : FI REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25241 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: METHANOCALDOCOCCUS JANASCHII PROLINE TRNA REMARK 200 SYNTHETASE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, BETA-MERCAPTOETHANOL, REMARK 280 MGCL2,NACL, PROLINE SULFAMOYL ADENYLATE, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.29067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.64533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.96800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.32267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 136.61333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.29067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.64533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.32267 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.96800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 136.61333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTED BY A TWOFOLD REMARK 300 ROTATION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -54.64533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 ASN A 10 REMARK 465 ARG A 11 REMARK 465 TYR A 12 REMARK 465 HIS A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 LYS A 16 REMARK 465 MET A 17 REMARK 465 THR A 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 34.79 -71.67 REMARK 500 PRO A 39 -0.75 -52.60 REMARK 500 LEU A 73 102.90 -161.00 REMARK 500 ALA A 87 -71.78 -85.95 REMARK 500 GLU A 94 -71.42 -28.50 REMARK 500 ARG A 110 109.94 -174.49 REMARK 500 ARG A 131 -65.26 -132.10 REMARK 500 GLU A 150 -154.77 -128.68 REMARK 500 THR A 151 121.06 -33.11 REMARK 500 LYS A 152 -34.49 -38.41 REMARK 500 LEU A 157 0.95 58.02 REMARK 500 PRO A 208 -7.19 -52.42 REMARK 500 PRO A 226 -10.19 -49.03 REMARK 500 ASP A 282 169.40 178.51 REMARK 500 ARG A 359 -86.69 -48.33 REMARK 500 GLU A 362 46.85 -75.31 REMARK 500 LYS A 363 -8.80 -162.36 REMARK 500 LEU A 381 -9.54 -53.97 REMARK 500 ARG A 428 -141.73 59.62 REMARK 500 GLU A 439 -73.51 -50.54 REMARK 500 ARG A 450 70.16 53.05 REMARK 500 SER A 461 -170.95 -65.57 REMARK 500 ASN A 466 -65.36 -97.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 511 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 436 SG REMARK 620 2 CYS A 441 SG 107.3 REMARK 620 3 CYS A 464 SG 136.4 98.5 REMARK 620 4 CYS A 467 SG 102.5 108.1 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 512 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 446 OE2 REMARK 620 2 ASP A 452 OD2 50.2 REMARK 620 3 HOH A 491 O 64.9 114.6 REMARK 620 4 HOH A 492 O 55.9 59.3 80.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P5A A 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NJ1 RELATED DB: PDB REMARK 900 RELATED ID: 1NJ2 RELATED DB: PDB REMARK 900 RELATED ID: 1NJ6 RELATED DB: PDB REMARK 900 RELATED ID: 1NJ8 RELATED DB: PDB DBREF 1NJ5 A 1 481 UNP O26708 SYP_METTH 1 481 SEQADV 1NJ5 MET A -19 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 GLY A -18 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 SER A -17 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 SER A -16 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 HIS A -15 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 HIS A -14 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 HIS A -13 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 HIS A -12 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 HIS A -11 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 HIS A -10 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 SER A -9 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 SER A -8 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 GLY A -7 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 LEU A -6 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 VAL A -5 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 PRO A -4 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 ARG A -3 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 GLY A -2 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 SER A -1 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 HIS A 0 UNP O26708 EXPRESSION TAG SEQADV 1NJ5 TYR A 473 UNP O26708 THR 473 SEE REMARK 999 SEQADV 1NJ5 ARG A 474 UNP O26708 GLY 474 SEE REMARK 999 SEQADV 1NJ5 ALA A 475 UNP O26708 LEU 475 SEE REMARK 999 SEQADV 1NJ5 TYR A 476 UNP O26708 THR 476 SEE REMARK 999 SEQADV 1NJ5 ALA A 478 UNP O26708 PRO 478 SEE REMARK 999 SEQADV 1NJ5 ARG A 479 UNP O26708 GLU 479 SEE REMARK 999 SEQADV 1NJ5 THR A 480 UNP O26708 HIS 480 SEE REMARK 999 SEQADV 1NJ5 TYR A 481 UNP O26708 ILE 481 SEE REMARK 999 SEQRES 1 A 501 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 501 LEU VAL PRO ARG GLY SER HIS MET GLN LYS PRO ILE LYS SEQRES 3 A 501 LYS ASP PRO ASN ARG TYR HIS GLY GLU LYS MET THR GLU SEQRES 4 A 501 PHE SER GLU TRP PHE HIS ASN ILE LEU GLU GLU ALA GLU SEQRES 5 A 501 ILE ILE ASP GLN ARG TYR PRO VAL LYS GLY MET HIS VAL SEQRES 6 A 501 TRP MET PRO HIS GLY PHE MET ILE ARG LYS ASN THR LEU SEQRES 7 A 501 LYS ILE LEU ARG ARG ILE LEU ASP ARG ASP HIS GLU GLU SEQRES 8 A 501 VAL LEU PHE PRO LEU LEU VAL PRO GLU ASP GLU LEU ALA SEQRES 9 A 501 LYS GLU ALA ILE HIS VAL LYS GLY PHE GLU ASP GLU VAL SEQRES 10 A 501 TYR TRP VAL THR HIS GLY GLY LEU SER LYS LEU GLN ARG SEQRES 11 A 501 LYS LEU ALA LEU ARG PRO THR SER GLU THR VAL MET TYR SEQRES 12 A 501 PRO MET PHE ALA LEU TRP VAL ARG SER HIS THR ASP LEU SEQRES 13 A 501 PRO MET ARG PHE TYR GLN VAL VAL ASN THR PHE ARG TYR SEQRES 14 A 501 GLU THR LYS HIS THR ARG PRO LEU ILE ARG VAL ARG GLU SEQRES 15 A 501 ILE THR THR PHE LYS GLU ALA HIS THR ILE HIS ALA THR SEQRES 16 A 501 ALA SER GLU ALA GLU GLU GLN VAL GLU ARG ALA VAL GLU SEQRES 17 A 501 ILE TYR LYS GLU PHE PHE ASN SER LEU GLY ILE PRO TYR SEQRES 18 A 501 LEU ILE THR ARG ARG PRO PRO TRP ASP LYS PHE PRO GLY SEQRES 19 A 501 SER GLU TYR THR VAL ALA PHE ASP THR LEU MET PRO ASP SEQRES 20 A 501 GLY LYS THR LEU GLN ILE GLY THR VAL HIS ASN LEU GLY SEQRES 21 A 501 GLN THR PHE ALA ARG THR PHE GLU ILE LYS PHE GLU THR SEQRES 22 A 501 PRO GLU GLY ASP HIS GLU TYR VAL HIS GLN THR CYS TYR SEQRES 23 A 501 GLY LEU SER ASP ARG VAL ILE ALA SER VAL ILE ALA ILE SEQRES 24 A 501 HIS GLY ASP GLU SER GLY LEU CYS LEU PRO PRO ASP VAL SEQRES 25 A 501 ALA ALA HIS GLN VAL VAL ILE VAL PRO ILE ILE PHE LYS SEQRES 26 A 501 LYS ALA ALA GLU GLU VAL MET GLU ALA CYS ARG GLU LEU SEQRES 27 A 501 ARG SER ARG LEU GLU ALA ALA GLY PHE ARG VAL HIS LEU SEQRES 28 A 501 ASP ASP ARG ASP ILE ARG ALA GLY ARG LYS TYR TYR GLU SEQRES 29 A 501 TRP GLU MET ARG GLY VAL PRO LEU ARG VAL GLU ILE GLY SEQRES 30 A 501 PRO ARG ASP LEU GLU LYS GLY ALA ALA VAL ILE SER ARG SEQRES 31 A 501 ARG ASP THR GLY GLU LYS VAL THR ALA ASP LEU GLN GLY SEQRES 32 A 501 ILE GLU GLU THR LEU ARG GLU LEU MET LYS ASP ILE LEU SEQRES 33 A 501 GLU ASN LEU ARG THR ARG ALA TRP GLU ARG MET GLU SER SEQRES 34 A 501 GLU ILE ARG GLU ALA GLU THR LEU GLU GLU ALA SER ARG SEQRES 35 A 501 ILE VAL ASP GLU LYS ARG GLY ILE ILE SER PHE MET TRP SEQRES 36 A 501 CYS GLY GLU GLU GLU CYS GLY MET ASP VAL GLU GLU LYS SEQRES 37 A 501 VAL ARG VAL ASP ILE LEU GLY ILE GLN GLU GLU GLY SER SEQRES 38 A 501 GLY THR CYS ILE ASN CYS GLY ARG GLU ALA PRO TYR ARG SEQRES 39 A 501 ALA TYR LEU ALA ARG THR TYR HET ZN A 511 1 HET MG A 512 1 HET P5A A 510 30 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM P5A '5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ FORMUL 4 P5A C15 H21 N7 O7 S FORMUL 5 HOH *28(H2 O) HELIX 1 1 GLU A 19 ALA A 31 1 13 HELIX 2 2 MET A 47 ASP A 66 1 20 HELIX 3 3 GLU A 80 ALA A 84 1 5 HELIX 4 4 ALA A 87 GLU A 94 1 8 HELIX 5 5 ASP A 95 VAL A 97 5 3 HELIX 6 6 SER A 118 VAL A 130 1 13 HELIX 7 7 THR A 175 LEU A 197 1 23 HELIX 8 8 GLN A 241 GLU A 248 1 8 HELIX 9 9 ASP A 270 HIS A 280 1 11 HELIX 10 10 ALA A 307 ALA A 325 1 19 HELIX 11 11 ARG A 337 MET A 347 1 11 HELIX 12 12 GLY A 357 GLU A 362 1 6 HELIX 13 13 GLY A 383 SER A 409 1 27 HELIX 14 14 THR A 416 ARG A 428 1 13 HELIX 15 15 GLU A 438 ARG A 450 1 13 SHEET 1 A 2 ILE A 34 ASP A 35 0 SHEET 2 A 2 VAL A 45 TRP A 46 -1 O VAL A 45 N ASP A 35 SHEET 1 B 7 GLU A 70 GLU A 71 0 SHEET 2 B 7 MET A 138 PHE A 147 1 O ARG A 139 N GLU A 70 SHEET 3 B 7 GLU A 162 HIS A 173 -1 O HIS A 170 N PHE A 140 SHEET 4 B 7 HIS A 262 LEU A 268 -1 O THR A 264 N THR A 171 SHEET 5 B 7 THR A 230 GLY A 240 -1 N HIS A 237 O CYS A 265 SHEET 6 B 7 TYR A 217 LEU A 224 -1 N VAL A 219 O VAL A 236 SHEET 7 B 7 LEU A 202 ARG A 205 -1 N LEU A 202 O ASP A 222 SHEET 1 C 3 LEU A 77 PRO A 79 0 SHEET 2 C 3 SER A 106 LEU A 114 -1 O ALA A 113 N VAL A 78 SHEET 3 C 3 TRP A 99 GLY A 103 -1 N VAL A 100 O LEU A 112 SHEET 1 D 2 LYS A 250 GLU A 252 0 SHEET 2 D 2 HIS A 258 TYR A 260 -1 O GLU A 259 N PHE A 251 SHEET 1 E 2 LEU A 286 CYS A 287 0 SHEET 2 E 2 ARG A 348 GLY A 349 1 O GLY A 349 N LEU A 286 SHEET 1 F 5 VAL A 329 LEU A 331 0 SHEET 2 F 5 VAL A 297 PRO A 301 1 N ILE A 299 O HIS A 330 SHEET 3 F 5 LEU A 352 ILE A 356 1 O VAL A 354 N VAL A 300 SHEET 4 F 5 ALA A 365 ARG A 370 -1 O VAL A 367 N GLU A 355 SHEET 5 F 5 LYS A 376 ASP A 380 -1 O VAL A 377 N ILE A 368 SHEET 1 G 4 ILE A 411 GLU A 413 0 SHEET 2 G 4 ILE A 430 TRP A 435 1 O ILE A 430 N ARG A 412 SHEET 3 G 4 TYR A 473 ALA A 478 -1 O ALA A 475 N PHE A 433 SHEET 4 G 4 ASP A 452 GLU A 458 -1 N ASP A 452 O ALA A 478 LINK SG CYS A 436 ZN ZN A 511 1555 1555 2.33 LINK SG CYS A 441 ZN ZN A 511 1555 1555 2.32 LINK OE2 GLU A 446 MG MG A 512 1555 1555 3.10 LINK OD2 ASP A 452 MG MG A 512 1555 1555 2.27 LINK SG CYS A 464 ZN ZN A 511 1555 1555 2.27 LINK SG CYS A 467 ZN ZN A 511 1555 1555 2.53 LINK O HOH A 491 MG MG A 512 1555 1555 2.43 LINK O HOH A 492 MG MG A 512 1555 1555 2.61 CISPEP 1 LEU A 136 PRO A 137 0 0.29 SITE 1 AC1 4 CYS A 436 CYS A 441 CYS A 464 CYS A 467 SITE 1 AC2 5 ASP A 210 GLU A 446 ASP A 452 HOH A 491 SITE 2 AC2 5 HOH A 492 SITE 1 AC3 20 THR A 117 GLU A 119 ARG A 148 GLU A 150 SITE 2 AC3 20 ILE A 158 ARG A 159 VAL A 160 ILE A 163 SITE 3 AC3 20 PHE A 166 GLU A 168 PHE A 212 GLN A 232 SITE 4 AC3 20 GLY A 234 THR A 235 HIS A 237 TYR A 266 SITE 5 AC3 20 GLY A 267 SER A 269 ARG A 271 HOH A 487 CRYST1 143.955 143.955 163.936 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006947 0.004011 0.000000 0.00000 SCALE2 0.000000 0.008021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006100 0.00000