data_1NL2 # _entry.id 1NL2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NL2 pdb_00001nl2 10.2210/pdb1nl2/pdb RCSB RCSB017967 ? ? WWPDB D_1000017967 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NL2 _pdbx_database_status.recvd_initial_deposition_date 2003-01-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, M.' 1 'Huang, G.' 2 'Furie, B.' 3 'Seaton, B.' 4 'Furie, B.C.' 5 # _citation.id primary _citation.title 'Structural basis of membrane binding by Gla domains of vitamin K-dependent proteins.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 10 _citation.page_first 751 _citation.page_last 756 _citation.year 2003 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12923575 _citation.pdbx_database_id_DOI 10.1038/nsb971 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, M.' 1 ? primary 'Rigby, A.C.' 2 ? primary 'Morelli, X.' 3 ? primary 'Grant, M.A.' 4 ? primary 'Huang, G.' 5 ? primary 'Furie, B.' 6 ? primary 'Seaton, B.' 7 ? primary 'Furie, B.C.' 8 ? # _cell.entry_id 1NL2 _cell.length_a 38.894 _cell.length_b 53.217 _cell.length_c 128.959 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NL2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Prothrombin 16857.311 1 3.4.21.5 ? 'FRAGMENT 1 (residues 1-156)' ? 2 branched syn '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 7 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 6 non-polymer syn 'O-{HYDROXY[((2R)-2-HYDROXY-3-{[(1S)-1-HYDROXYPENTADECYL]OXY}PROPYL)OXY]PHOSPHORYL}-L-SERINE' 485.549 1 ? ? ? ? 7 water nat water 18.015 60 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;ANKGFL(CGU)(CGU)VRKGNL(CGU)R(CGU)CL(CGU)(CGU)PCSR(CGU)(CGU)AF(CGU)AL(CGU)SLSATDA FWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDG SITGPWCYTTSPTLRREECSVPVCGQ ; _entity_poly.pdbx_seq_one_letter_code_can ;ANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSATDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSV TRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDGSITGPWCYTTSPTLRREECSVPVCGQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASN n 1 3 LYS n 1 4 GLY n 1 5 PHE n 1 6 LEU n 1 7 CGU n 1 8 CGU n 1 9 VAL n 1 10 ARG n 1 11 LYS n 1 12 GLY n 1 13 ASN n 1 14 LEU n 1 15 CGU n 1 16 ARG n 1 17 CGU n 1 18 CYS n 1 19 LEU n 1 20 CGU n 1 21 CGU n 1 22 PRO n 1 23 CYS n 1 24 SER n 1 25 ARG n 1 26 CGU n 1 27 CGU n 1 28 ALA n 1 29 PHE n 1 30 CGU n 1 31 ALA n 1 32 LEU n 1 33 CGU n 1 34 SER n 1 35 LEU n 1 36 SER n 1 37 ALA n 1 38 THR n 1 39 ASP n 1 40 ALA n 1 41 PHE n 1 42 TRP n 1 43 ALA n 1 44 LYS n 1 45 TYR n 1 46 THR n 1 47 ALA n 1 48 CYS n 1 49 GLU n 1 50 SER n 1 51 ALA n 1 52 ARG n 1 53 ASN n 1 54 PRO n 1 55 ARG n 1 56 GLU n 1 57 LYS n 1 58 LEU n 1 59 ASN n 1 60 GLU n 1 61 CYS n 1 62 LEU n 1 63 GLU n 1 64 GLY n 1 65 ASN n 1 66 CYS n 1 67 ALA n 1 68 GLU n 1 69 GLY n 1 70 VAL n 1 71 GLY n 1 72 MET n 1 73 ASN n 1 74 TYR n 1 75 ARG n 1 76 GLY n 1 77 ASN n 1 78 VAL n 1 79 SER n 1 80 VAL n 1 81 THR n 1 82 ARG n 1 83 SER n 1 84 GLY n 1 85 ILE n 1 86 GLU n 1 87 CYS n 1 88 GLN n 1 89 LEU n 1 90 TRP n 1 91 ARG n 1 92 SER n 1 93 ARG n 1 94 TYR n 1 95 PRO n 1 96 HIS n 1 97 LYS n 1 98 PRO n 1 99 GLU n 1 100 ILE n 1 101 ASN n 1 102 SER n 1 103 THR n 1 104 THR n 1 105 HIS n 1 106 PRO n 1 107 GLY n 1 108 ALA n 1 109 ASP n 1 110 LEU n 1 111 ARG n 1 112 GLU n 1 113 ASN n 1 114 PHE n 1 115 CYS n 1 116 ARG n 1 117 ASN n 1 118 PRO n 1 119 ASP n 1 120 GLY n 1 121 SER n 1 122 ILE n 1 123 THR n 1 124 GLY n 1 125 PRO n 1 126 TRP n 1 127 CYS n 1 128 TYR n 1 129 THR n 1 130 THR n 1 131 SER n 1 132 PRO n 1 133 THR n 1 134 LEU n 1 135 ARG n 1 136 ARG n 1 137 GLU n 1 138 GLU n 1 139 CYS n 1 140 SER n 1 141 VAL n 1 142 PRO n 1 143 VAL n 1 144 CYS n 1 145 GLY n 1 146 GLN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THRB_BOVIN _struct_ref.pdbx_db_accession P00735 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSATDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSV TRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDGSITGPWCYTTSPTLRREECSVPVCGQ ; _struct_ref.pdbx_align_begin 44 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1NL2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00735 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 146 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1NL2 CGU A 7 ? UNP P00735 GLU 50 'modified residue' 7 1 1 1NL2 CGU A 8 ? UNP P00735 GLU 51 'modified residue' 8 2 1 1NL2 CGU A 15 ? UNP P00735 GLU 58 'modified residue' 15 3 1 1NL2 CGU A 17 ? UNP P00735 GLU 60 'modified residue' 17 4 1 1NL2 CGU A 20 ? UNP P00735 GLU 63 'modified residue' 20 5 1 1NL2 CGU A 21 ? UNP P00735 GLU 64 'modified residue' 21 6 1 1NL2 CGU A 26 ? UNP P00735 GLU 69 'modified residue' 26 7 1 1NL2 CGU A 27 ? UNP P00735 GLU 70 'modified residue' 27 8 1 1NL2 CGU A 30 ? UNP P00735 GLU 73 'modified residue' 30 9 1 1NL2 CGU A 33 ? UNP P00735 GLU 76 'modified residue' 33 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CGU 'L-peptide linking' n 'GAMMA-CARBOXY-GLUTAMIC ACID' ? 'C6 H9 N O6' 191.139 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LPS 'L-peptide linking' n 'O-{HYDROXY[((2R)-2-HYDROXY-3-{[(1S)-1-HYDROXYPENTADECYL]OXY}PROPYL)OXY]PHOSPHORYL}-L-SERINE' LYSOPHOSPHOTIDYLSERINE 'C21 H44 N O9 P' 485.549 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1NL2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.96 _exptl_crystal.density_percent_sol 68.91 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details 'pH 7.6' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1NL2 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.3 _reflns.number_obs 11566 _reflns.number_all ? _reflns.percent_possible_obs 92.2 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.8 _reflns.B_iso_Wilson_estimate 38.5 _reflns.pdbx_redundancy 9.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 93.4 _reflns_shell.Rmerge_I_obs 0.314 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1NL2 _refine.ls_number_reflns_obs 11181 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 40.98 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 89.5 _refine.ls_R_factor_obs 0.236 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.236 _refine.ls_R_factor_R_free 0.274 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.1 _refine.ls_number_reflns_R_free 793 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.1 _refine.aniso_B[1][1] 9.58 _refine.aniso_B[2][2] -0.71 _refine.aniso_B[3][3] -8.87 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.354745 _refine.solvent_model_param_bsol 42.0849 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1NL1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1NL2 _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.25 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.40 _refine_analyze.Luzzati_sigma_a_free 0.30 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1175 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1319 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 40.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.77 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 5.34 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 6.43 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 7.68 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 9.00 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 1622 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 86.0 _refine_ls_shell.R_factor_R_free 0.312 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.percent_reflns_R_free 7.4 _refine_ls_shell.number_reflns_R_free 129 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 PT.PAR ? 'X-RAY DIFFRACTION' 3 CARBOHYDRATE.PARAM ? 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 5 ION.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1NL2 _struct.title 'BOVINE PROTHROMBIN FRAGMENT 1 IN COMPLEX WITH CALCIUM AND LYSOPHOSPHOTIDYLSERINE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NL2 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 6 ? O N N 7 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 6 ? ARG A 10 ? LEU A 6 ARG A 10 5 ? 5 HELX_P HELX_P2 2 ASN A 13 ? CYS A 18 ? ASN A 13 CYS A 18 1 ? 6 HELX_P HELX_P3 3 SER A 24 ? LEU A 32 ? SER A 24 LEU A 32 1 ? 9 HELX_P HELX_P4 4 SER A 34 ? ALA A 47 ? SER A 34 ALA A 47 1 ? 14 HELX_P HELX_P5 5 CYS A 48 ? ARG A 52 ? CYS A 48 ARG A 52 5 ? 5 HELX_P HELX_P6 6 PRO A 54 ? GLY A 64 ? PRO A 54 GLY A 64 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 23 SG ? ? A CYS 18 A CYS 23 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 61 SG ? ? A CYS 48 A CYS 61 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? A CYS 66 SG ? ? ? 1_555 A CYS 144 SG ? ? A CYS 66 A CYS 144 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? A CYS 87 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 87 A CYS 127 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf5 disulf ? ? A CYS 115 SG ? ? ? 1_555 A CYS 139 SG ? ? A CYS 115 A CYS 139 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale both ? A LEU 6 C ? ? ? 1_555 A CGU 7 N ? ? A LEU 6 A CGU 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A CGU 7 C ? ? ? 1_555 A CGU 8 N ? ? A CGU 7 A CGU 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A CGU 8 C ? ? ? 1_555 A VAL 9 N ? ? A CGU 8 A VAL 9 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A LEU 14 C ? ? ? 1_555 A CGU 15 N ? ? A LEU 14 A CGU 15 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A CGU 15 C ? ? ? 1_555 A ARG 16 N ? ? A CGU 15 A ARG 16 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A ARG 16 C ? ? ? 1_555 A CGU 17 N ? ? A ARG 16 A CGU 17 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A CGU 17 C ? ? ? 1_555 A CYS 18 N ? ? A CGU 17 A CYS 18 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A LEU 19 C ? ? ? 1_555 A CGU 20 N ? ? A LEU 19 A CGU 20 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? A CGU 20 C ? ? ? 1_555 A CGU 21 N ? ? A CGU 20 A CGU 21 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale10 covale both ? A CGU 21 C ? ? ? 1_555 A PRO 22 N ? ? A CGU 21 A PRO 22 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale11 covale both ? A ARG 25 C ? ? ? 1_555 A CGU 26 N ? ? A ARG 25 A CGU 26 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? A CGU 26 C ? ? ? 1_555 A CGU 27 N ? ? A CGU 26 A CGU 27 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? A CGU 27 C ? ? ? 1_555 A ALA 28 N ? ? A CGU 27 A ALA 28 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? A PHE 29 C ? ? ? 1_555 A CGU 30 N ? ? A PHE 29 A CGU 30 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale both ? A CGU 30 C ? ? ? 1_555 A ALA 31 N ? ? A CGU 30 A ALA 31 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale16 covale both ? A LEU 32 C ? ? ? 1_555 A CGU 33 N ? ? A LEU 32 A CGU 33 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale17 covale both ? A CGU 33 C ? ? ? 1_555 A SER 34 N ? ? A CGU 33 A SER 34 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale18 covale one ? A ASN 77 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 77 B NAG 1 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation covale19 covale one ? A ASN 101 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 101 A NAG 303 1_555 ? ? ? ? ? ? ? 1.476 ? N-Glycosylation covale20 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.379 ? ? metalc1 metalc ? ? A ALA 1 O ? ? ? 1_555 H CA . CA ? ? A ALA 1 A CA 205 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc2 metalc ? ? A ASN 2 OD1 ? ? ? 1_555 G CA . CA ? ? A ASN 2 A CA 204 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc3 metalc ? ? A CGU 7 OE11 ? ? ? 1_555 G CA . CA ? ? A CGU 7 A CA 204 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc4 metalc ? ? A CGU 7 OE11 ? ? ? 1_555 H CA . CA ? ? A CGU 7 A CA 205 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc5 metalc ? ? A CGU 7 OE12 ? ? ? 1_555 H CA . CA ? ? A CGU 7 A CA 205 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc6 metalc ? ? A CGU 8 OE12 ? ? ? 1_555 E CA . CA ? ? A CGU 8 A CA 202 1_555 ? ? ? ? ? ? ? 2.453 ? ? metalc7 metalc ? ? A CGU 8 OE21 ? ? ? 1_555 E CA . CA ? ? A CGU 8 A CA 202 1_555 ? ? ? ? ? ? ? 2.577 ? ? metalc8 metalc ? ? A CGU 8 OE21 ? ? ? 1_555 F CA . CA ? ? A CGU 8 A CA 203 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc9 metalc ? ? A CGU 8 OE22 ? ? ? 1_555 F CA . CA ? ? A CGU 8 A CA 203 1_555 ? ? ? ? ? ? ? 2.952 ? ? metalc10 metalc ? ? A CGU 8 OE22 ? ? ? 1_555 G CA . CA ? ? A CGU 8 A CA 204 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc11 metalc ? ? A CGU 15 OE21 ? ? ? 1_555 J CA . CA ? ? A CGU 15 A CA 207 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc12 metalc ? ? A CGU 15 OE12 ? ? ? 1_555 J CA . CA ? ? A CGU 15 A CA 207 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc13 metalc ? ? A CGU 17 OE11 ? ? ? 1_555 F CA . CA ? ? A CGU 17 A CA 203 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc14 metalc ? ? A CGU 17 OE21 ? ? ? 1_555 G CA . CA ? ? A CGU 17 A CA 204 1_555 ? ? ? ? ? ? ? 2.372 ? ? metalc15 metalc ? ? A CGU 17 OE11 ? ? ? 1_555 G CA . CA ? ? A CGU 17 A CA 204 1_555 ? ? ? ? ? ? ? 2.526 ? ? metalc16 metalc ? ? A CGU 17 OE21 ? ? ? 1_555 H CA . CA ? ? A CGU 17 A CA 205 1_555 ? ? ? ? ? ? ? 2.257 ? ? metalc17 metalc ? ? A CGU 17 OE22 ? ? ? 1_555 H CA . CA ? ? A CGU 17 A CA 205 1_555 ? ? ? ? ? ? ? 2.514 ? ? metalc18 metalc ? ? A CGU 20 OE21 ? ? ? 1_555 J CA . CA ? ? A CGU 20 A CA 207 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc19 metalc ? ? A CGU 20 OE11 ? ? ? 1_555 J CA . CA ? ? A CGU 20 A CA 207 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc20 metalc ? ? A CGU 21 OE11 ? ? ? 1_555 H CA . CA ? ? A CGU 21 A CA 205 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc21 metalc ? ? A CGU 21 OE12 ? ? ? 1_555 I CA . CA ? ? A CGU 21 A CA 206 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc22 metalc ? ? A CGU 21 OE22 ? ? ? 1_555 I CA . CA ? ? A CGU 21 A CA 206 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc23 metalc ? ? A CGU 26 OE12 ? ? ? 1_555 D CA . CA ? ? A CGU 26 A CA 201 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc24 metalc ? ? A CGU 26 OE21 ? ? ? 1_555 D CA . CA ? ? A CGU 26 A CA 201 1_555 ? ? ? ? ? ? ? 2.389 ? ? metalc25 metalc ? ? A CGU 27 OE12 ? ? ? 1_555 E CA . CA ? ? A CGU 27 A CA 202 1_555 ? ? ? ? ? ? ? 2.451 ? ? metalc26 metalc ? ? A CGU 27 OE11 ? ? ? 1_555 F CA . CA ? ? A CGU 27 A CA 203 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc27 metalc ? ? A CGU 27 OE22 ? ? ? 1_555 G CA . CA ? ? A CGU 27 A CA 204 1_555 ? ? ? ? ? ? ? 2.343 ? ? metalc28 metalc ? ? A CGU 27 OE11 ? ? ? 1_555 G CA . CA ? ? A CGU 27 A CA 204 1_555 ? ? ? ? ? ? ? 2.585 ? ? metalc29 metalc ? ? A CGU 30 OE11 ? ? ? 1_555 D CA . CA ? ? A CGU 30 A CA 201 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc30 metalc ? ? A CGU 30 OE22 ? ? ? 1_555 D CA . CA ? ? A CGU 30 A CA 201 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc31 metalc ? ? A CGU 30 OE21 ? ? ? 1_555 E CA . CA ? ? A CGU 30 A CA 202 1_555 ? ? ? ? ? ? ? 2.452 ? ? metalc32 metalc ? ? A CGU 30 OE22 ? ? ? 1_555 E CA . CA ? ? A CGU 30 A CA 202 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc33 metalc ? ? A CGU 30 OE21 ? ? ? 1_555 F CA . CA ? ? A CGU 30 A CA 203 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc34 metalc ? ? E CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 202 A HOH 504 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc35 metalc ? ? E CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 202 A HOH 507 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc36 metalc ? ? F CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 203 A HOH 514 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc37 metalc ? ? F CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 203 A HOH 519 1_555 ? ? ? ? ? ? ? 2.447 ? ? metalc38 metalc ? ? F CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 203 A HOH 522 1_555 ? ? ? ? ? ? ? 2.577 ? ? metalc39 metalc ? ? H CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 205 A HOH 527 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc40 metalc ? ? I CA . CA ? ? ? 1_555 N LPS . OT1 ? ? A CA 206 A LPS 451 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc41 metalc ? ? I CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 206 A HOH 557 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc42 metalc ? ? J CA . CA ? ? ? 1_555 O HOH . O ? ? A CA 207 A HOH 537 1_555 ? ? ? ? ? ? ? 2.763 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 53 A . ? ASN 53 A PRO 54 A ? PRO 54 A 1 -0.17 2 TYR 94 A . ? TYR 94 A PRO 95 A ? PRO 95 A 1 0.01 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 126 ? TYR A 128 ? TRP A 126 TYR A 128 A 2 ARG A 136 ? GLU A 138 ? ARG A 136 GLU A 138 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id CYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 127 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id CYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 127 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 137 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 137 # _database_PDB_matrix.entry_id 1NL2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1NL2 _atom_sites.fract_transf_matrix[1][1] 0.025711 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018791 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007754 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CL N O P S # loop_ _database_PDB_caveat.text 'LPS A 451 HAS WRONG CHIRALITY AT ATOM C31' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 CGU 7 7 7 CGU CGU A . n A 1 8 CGU 8 8 8 CGU CGU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 CGU 15 15 15 CGU CGU A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 CGU 17 17 17 CGU CGU A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 CGU 20 20 20 CGU CGU A . n A 1 21 CGU 21 21 21 CGU CGU A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 CGU 26 26 26 CGU CGU A . n A 1 27 CGU 27 27 27 CGU CGU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 CGU 30 30 30 CGU CGU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 CGU 33 33 33 CGU CGU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 CYS 61 61 61 CYS CYS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 CYS 87 87 87 CYS CYS A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 CYS 139 139 139 CYS CYS A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 CYS 144 144 144 CYS CYS A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 GLN 146 146 146 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 303 303 NAG NAG A . D 4 CA 1 201 201 CA CA A . E 4 CA 1 202 202 CA CA A . F 4 CA 1 203 203 CA CA A . G 4 CA 1 204 204 CA CA A . H 4 CA 1 205 205 CA CA A . I 4 CA 1 206 206 CA CA A . J 4 CA 1 207 207 CA CA A . K 5 CL 1 250 250 CL CL A . L 5 CL 1 251 251 CL CL A . M 5 CL 1 252 252 CL CL A . N 6 LPS 1 451 451 LPS LPS A . O 7 HOH 1 501 501 HOH HOH A . O 7 HOH 2 502 502 HOH HOH A . O 7 HOH 3 503 503 HOH HOH A . O 7 HOH 4 504 504 HOH HOH A . O 7 HOH 5 505 505 HOH HOH A . O 7 HOH 6 506 506 HOH HOH A . O 7 HOH 7 507 507 HOH HOH A . O 7 HOH 8 508 508 HOH HOH A . O 7 HOH 9 509 509 HOH HOH A . O 7 HOH 10 510 510 HOH HOH A . O 7 HOH 11 511 511 HOH HOH A . O 7 HOH 12 512 512 HOH HOH A . O 7 HOH 13 513 513 HOH HOH A . O 7 HOH 14 514 514 HOH HOH A . O 7 HOH 15 515 515 HOH HOH A . O 7 HOH 16 516 516 HOH HOH A . O 7 HOH 17 517 517 HOH HOH A . O 7 HOH 18 518 518 HOH HOH A . O 7 HOH 19 519 519 HOH HOH A . O 7 HOH 20 520 520 HOH HOH A . O 7 HOH 21 521 521 HOH HOH A . O 7 HOH 22 522 522 HOH HOH A . O 7 HOH 23 523 523 HOH HOH A . O 7 HOH 24 524 524 HOH HOH A . O 7 HOH 25 525 525 HOH HOH A . O 7 HOH 26 526 526 HOH HOH A . O 7 HOH 27 527 527 HOH HOH A . O 7 HOH 28 528 528 HOH HOH A . O 7 HOH 29 529 529 HOH HOH A . O 7 HOH 30 530 530 HOH HOH A . O 7 HOH 31 531 531 HOH HOH A . O 7 HOH 32 532 532 HOH HOH A . O 7 HOH 33 533 533 HOH HOH A . O 7 HOH 34 534 534 HOH HOH A . O 7 HOH 35 535 535 HOH HOH A . O 7 HOH 36 536 536 HOH HOH A . O 7 HOH 37 537 537 HOH HOH A . O 7 HOH 38 538 538 HOH HOH A . O 7 HOH 39 539 539 HOH HOH A . O 7 HOH 40 540 540 HOH HOH A . O 7 HOH 41 541 541 HOH HOH A . O 7 HOH 42 542 542 HOH HOH A . O 7 HOH 43 543 543 HOH HOH A . O 7 HOH 44 544 544 HOH HOH A . O 7 HOH 45 545 545 HOH HOH A . O 7 HOH 46 546 546 HOH HOH A . O 7 HOH 47 547 547 HOH HOH A . O 7 HOH 48 548 548 HOH HOH A . O 7 HOH 49 549 549 HOH HOH A . O 7 HOH 50 550 550 HOH HOH A . O 7 HOH 51 551 551 HOH HOH A . O 7 HOH 52 552 552 HOH HOH A . O 7 HOH 53 553 553 HOH HOH A . O 7 HOH 54 554 554 HOH HOH A . O 7 HOH 55 555 555 HOH HOH A . O 7 HOH 56 556 556 HOH HOH A . O 7 HOH 57 557 557 HOH HOH A . O 7 HOH 58 558 558 HOH HOH A . O 7 HOH 59 559 559 HOH HOH A . O 7 HOH 60 560 560 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 77 A ASN 77 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 101 A ASN 101 ? ASN 'GLYCOSYLATION SITE' 3 A CGU 7 A CGU 7 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 4 A CGU 8 A CGU 8 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 5 A CGU 15 A CGU 15 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 6 A CGU 17 A CGU 17 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 7 A CGU 20 A CGU 20 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 8 A CGU 21 A CGU 21 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 9 A CGU 26 A CGU 26 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 10 A CGU 27 A CGU 27 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 11 A CGU 30 A CGU 30 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' 12 A CGU 33 A CGU 33 ? GLU 'GAMMA-CARBOXY-GLUTAMIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ALA 1 ? A ALA 1 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 80.5 ? 2 O ? A ALA 1 ? A ALA 1 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE12 ? A CGU 7 ? A CGU 7 ? 1_555 64.0 ? 3 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE12 ? A CGU 7 ? A CGU 7 ? 1_555 53.0 ? 4 O ? A ALA 1 ? A ALA 1 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 66.2 ? 5 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 71.6 ? 6 OE12 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 108.7 ? 7 O ? A ALA 1 ? A ALA 1 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE22 ? A CGU 17 ? A CGU 17 ? 1_555 120.8 ? 8 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE22 ? A CGU 17 ? A CGU 17 ? 1_555 78.8 ? 9 OE12 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE22 ? A CGU 17 ? A CGU 17 ? 1_555 131.1 ? 10 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE22 ? A CGU 17 ? A CGU 17 ? 1_555 54.7 ? 11 O ? A ALA 1 ? A ALA 1 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE11 ? A CGU 21 ? A CGU 21 ? 1_555 78.0 ? 12 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE11 ? A CGU 21 ? A CGU 21 ? 1_555 146.8 ? 13 OE12 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE11 ? A CGU 21 ? A CGU 21 ? 1_555 133.3 ? 14 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE11 ? A CGU 21 ? A CGU 21 ? 1_555 76.6 ? 15 OE22 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 OE11 ? A CGU 21 ? A CGU 21 ? 1_555 90.8 ? 16 O ? A ALA 1 ? A ALA 1 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 O ? O HOH . ? A HOH 527 ? 1_555 78.1 ? 17 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 O ? O HOH . ? A HOH 527 ? 1_555 122.4 ? 18 OE12 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 O ? O HOH . ? A HOH 527 ? 1_555 69.6 ? 19 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 O ? O HOH . ? A HOH 527 ? 1_555 139.2 ? 20 OE22 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 O ? O HOH . ? A HOH 527 ? 1_555 155.4 ? 21 OE11 ? A CGU 21 ? A CGU 21 ? 1_555 CA ? H CA . ? A CA 205 ? 1_555 O ? O HOH . ? A HOH 527 ? 1_555 77.2 ? 22 OD1 ? A ASN 2 ? A ASN 2 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 91.5 ? 23 OD1 ? A ASN 2 ? A ASN 2 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 65.3 ? 24 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 81.0 ? 25 OD1 ? A ASN 2 ? A ASN 2 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 129.4 ? 26 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 67.7 ? 27 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 144.4 ? 28 OD1 ? A ASN 2 ? A ASN 2 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 143.8 ? 29 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 94.1 ? 30 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 80.4 ? 31 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 85.3 ? 32 OD1 ? A ASN 2 ? A ASN 2 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE22 ? A CGU 27 ? A CGU 27 ? 1_555 86.5 ? 33 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE22 ? A CGU 27 ? A CGU 27 ? 1_555 128.3 ? 34 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE22 ? A CGU 27 ? A CGU 27 ? 1_555 141.0 ? 35 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE22 ? A CGU 27 ? A CGU 27 ? 1_555 74.3 ? 36 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE22 ? A CGU 27 ? A CGU 27 ? 1_555 116.6 ? 37 OD1 ? A ASN 2 ? A ASN 2 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 87.5 ? 38 OE11 ? A CGU 7 ? A CGU 7 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 149.1 ? 39 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 70.6 ? 40 OE21 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 133.5 ? 41 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 69.9 ? 42 OE22 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? G CA . ? A CA 204 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 82.4 ? 43 OE12 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 86.8 ? 44 OE12 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE12 ? A CGU 27 ? A CGU 27 ? 1_555 104.6 ? 45 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE12 ? A CGU 27 ? A CGU 27 ? 1_555 96.7 ? 46 OE12 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 155.2 ? 47 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 68.4 ? 48 OE12 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 78.2 ? 49 OE12 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 150.5 ? 50 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 112.7 ? 51 OE12 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 95.1 ? 52 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 50.1 ? 53 OE12 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 504 ? 1_555 83.4 ? 54 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 504 ? 1_555 169.5 ? 55 OE12 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 504 ? 1_555 82.2 ? 56 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 504 ? 1_555 121.2 ? 57 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 504 ? 1_555 77.8 ? 58 OE12 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 507 ? 1_555 91.1 ? 59 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 507 ? 1_555 82.4 ? 60 OE12 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 507 ? 1_555 164.2 ? 61 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 507 ? 1_555 86.9 ? 62 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 507 ? 1_555 71.0 ? 63 O ? O HOH . ? A HOH 504 ? 1_555 CA ? E CA . ? A CA 202 ? 1_555 O ? O HOH . ? A HOH 507 ? 1_555 101.6 ? 64 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 47.7 ? 65 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 115.1 ? 66 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 69.6 ? 67 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 86.5 ? 68 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 65.0 ? 69 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 80.4 ? 70 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 72.7 ? 71 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 108.5 ? 72 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 156.4 ? 73 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 77.8 ? 74 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 514 ? 1_555 76.4 ? 75 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 514 ? 1_555 117.2 ? 76 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 514 ? 1_555 131.7 ? 77 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 514 ? 1_555 147.6 ? 78 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 514 ? 1_555 70.9 ? 79 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 519 ? 1_555 93.4 ? 80 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 519 ? 1_555 86.1 ? 81 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 519 ? 1_555 63.9 ? 82 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 519 ? 1_555 140.5 ? 83 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 519 ? 1_555 139.5 ? 84 O ? O HOH . ? A HOH 514 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 519 ? 1_555 68.9 ? 85 OE21 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 522 ? 1_555 161.9 ? 86 OE22 ? A CGU 8 ? A CGU 8 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 522 ? 1_555 148.0 ? 87 OE11 ? A CGU 17 ? A CGU 17 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 522 ? 1_555 83.0 ? 88 OE11 ? A CGU 27 ? A CGU 27 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 522 ? 1_555 95.1 ? 89 OE21 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 522 ? 1_555 90.0 ? 90 O ? O HOH . ? A HOH 514 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 522 ? 1_555 93.2 ? 91 O ? O HOH . ? A HOH 519 ? 1_555 CA ? F CA . ? A CA 203 ? 1_555 O ? O HOH . ? A HOH 522 ? 1_555 96.7 ? 92 OE21 ? A CGU 15 ? A CGU 15 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 OE12 ? A CGU 15 ? A CGU 15 ? 1_555 86.1 ? 93 OE21 ? A CGU 15 ? A CGU 15 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 OE21 ? A CGU 20 ? A CGU 20 ? 1_555 158.1 ? 94 OE12 ? A CGU 15 ? A CGU 15 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 OE21 ? A CGU 20 ? A CGU 20 ? 1_555 78.6 ? 95 OE21 ? A CGU 15 ? A CGU 15 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 OE11 ? A CGU 20 ? A CGU 20 ? 1_555 85.1 ? 96 OE12 ? A CGU 15 ? A CGU 15 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 OE11 ? A CGU 20 ? A CGU 20 ? 1_555 93.5 ? 97 OE21 ? A CGU 20 ? A CGU 20 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 OE11 ? A CGU 20 ? A CGU 20 ? 1_555 80.5 ? 98 OE21 ? A CGU 15 ? A CGU 15 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 O ? O HOH . ? A HOH 537 ? 1_555 109.8 ? 99 OE12 ? A CGU 15 ? A CGU 15 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 O ? O HOH . ? A HOH 537 ? 1_555 88.3 ? 100 OE21 ? A CGU 20 ? A CGU 20 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 O ? O HOH . ? A HOH 537 ? 1_555 85.4 ? 101 OE11 ? A CGU 20 ? A CGU 20 ? 1_555 CA ? J CA . ? A CA 207 ? 1_555 O ? O HOH . ? A HOH 537 ? 1_555 165.1 ? 102 OE12 ? A CGU 21 ? A CGU 21 ? 1_555 CA ? I CA . ? A CA 206 ? 1_555 OE22 ? A CGU 21 ? A CGU 21 ? 1_555 77.8 ? 103 OE12 ? A CGU 21 ? A CGU 21 ? 1_555 CA ? I CA . ? A CA 206 ? 1_555 OT1 ? N LPS . ? A LPS 451 ? 1_555 92.1 ? 104 OE22 ? A CGU 21 ? A CGU 21 ? 1_555 CA ? I CA . ? A CA 206 ? 1_555 OT1 ? N LPS . ? A LPS 451 ? 1_555 168.5 ? 105 OE12 ? A CGU 21 ? A CGU 21 ? 1_555 CA ? I CA . ? A CA 206 ? 1_555 O ? O HOH . ? A HOH 557 ? 1_555 150.8 ? 106 OE22 ? A CGU 21 ? A CGU 21 ? 1_555 CA ? I CA . ? A CA 206 ? 1_555 O ? O HOH . ? A HOH 557 ? 1_555 129.7 ? 107 OT1 ? N LPS . ? A LPS 451 ? 1_555 CA ? I CA . ? A CA 206 ? 1_555 O ? O HOH . ? A HOH 557 ? 1_555 61.3 ? 108 OE12 ? A CGU 26 ? A CGU 26 ? 1_555 CA ? D CA . ? A CA 201 ? 1_555 OE21 ? A CGU 26 ? A CGU 26 ? 1_555 75.5 ? 109 OE12 ? A CGU 26 ? A CGU 26 ? 1_555 CA ? D CA . ? A CA 201 ? 1_555 OE11 ? A CGU 30 ? A CGU 30 ? 1_555 88.2 ? 110 OE21 ? A CGU 26 ? A CGU 26 ? 1_555 CA ? D CA . ? A CA 201 ? 1_555 OE11 ? A CGU 30 ? A CGU 30 ? 1_555 148.5 ? 111 OE12 ? A CGU 26 ? A CGU 26 ? 1_555 CA ? D CA . ? A CA 201 ? 1_555 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 81.1 ? 112 OE21 ? A CGU 26 ? A CGU 26 ? 1_555 CA ? D CA . ? A CA 201 ? 1_555 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 71.8 ? 113 OE11 ? A CGU 30 ? A CGU 30 ? 1_555 CA ? D CA . ? A CA 201 ? 1_555 OE22 ? A CGU 30 ? A CGU 30 ? 1_555 79.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-16 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-08-16 6 'Structure model' 2 2 2023-11-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Refinement description' 13 5 'Structure model' 'Structure summary' 14 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' pdbx_struct_conn_angle 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_ref_seq_dif 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen 20 5 'Structure model' chem_comp 21 5 'Structure model' chem_comp_atom 22 5 'Structure model' chem_comp_bond 23 5 'Structure model' database_2 24 5 'Structure model' pdbx_initial_refinement_model 25 6 'Structure model' chem_comp_atom 26 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_atom_site.label_entity_id' 5 4 'Structure model' '_chem_comp.name' 6 4 'Structure model' '_chem_comp.type' 7 4 'Structure model' '_pdbx_entity_nonpoly.entity_id' 8 4 'Structure model' '_pdbx_entity_nonpoly.name' 9 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.value' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 4 'Structure model' '_struct_conn.pdbx_role' 28 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 42 4 'Structure model' '_struct_ref_seq_dif.details' 43 5 'Structure model' '_chem_comp.pdbx_synonyms' 44 5 'Structure model' '_database_2.pdbx_DOI' 45 5 'Structure model' '_database_2.pdbx_database_accession' 46 6 'Structure model' '_chem_comp_atom.atom_id' 47 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG A ASN 101 ? ? C8 A NAG 303 ? ? 1.66 2 1 OD1 A ASN 101 ? ? C8 A NAG 303 ? ? 1.68 3 1 CB A ASN 101 ? ? C8 A NAG 303 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE1 A GLU 56 ? B 1_555 O A HOH 541 ? ? 4_567 1.01 2 1 ND2 A ASN 2 ? ? 1_555 O A HOH 558 ? ? 4_467 1.51 3 1 NE A ARG 93 ? ? 1_555 O A VAL 141 ? ? 3_656 1.63 4 1 O A HOH 502 ? ? 1_555 O A HOH 541 ? ? 4_567 1.71 5 1 CB A GLN 146 ? ? 1_555 CL A CL 251 ? ? 3_646 1.92 6 1 ND2 A ASN 2 ? ? 1_555 O A HOH 509 ? ? 4_467 1.93 7 1 CA A PRO 95 ? ? 1_555 O A HOH 549 ? ? 3_656 1.97 8 1 CD A ARG 93 ? ? 1_555 O A VAL 141 ? ? 3_656 1.98 9 1 CE A LYS 97 ? ? 1_555 O A GLN 146 ? ? 3_656 1.98 10 1 CB A PRO 95 ? ? 1_555 O A HOH 549 ? ? 3_656 2.01 11 1 NZ A LYS 97 ? ? 1_555 O A GLN 146 ? ? 3_656 2.05 12 1 OE12 A CGU 27 ? ? 1_555 O A HOH 509 ? ? 4_467 2.05 13 1 O A ARG 93 ? ? 1_555 CG2 A VAL 143 ? ? 3_656 2.08 14 1 O A GLY 69 ? ? 1_555 CB A TYR 94 ? ? 3_646 2.13 15 1 OH A TYR 94 ? ? 1_555 CB A VAL 141 ? ? 3_656 2.14 16 1 CD A GLU 56 ? B 1_555 O A HOH 541 ? ? 4_567 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 5 ? ? -52.73 -123.60 2 1 ALA A 51 ? ? -142.33 35.12 3 1 GLU A 112 ? ? 43.80 -125.10 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C31 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id LPS _pdbx_validate_chiral.auth_seq_id 451 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CGU N N N N 75 CGU CA C N S 76 CGU C C N N 77 CGU O O N N 78 CGU OXT O N N 79 CGU CB C N N 80 CGU CG C N N 81 CGU CD1 C N N 82 CGU CD2 C N N 83 CGU OE11 O N N 84 CGU OE12 O N N 85 CGU OE21 O N N 86 CGU OE22 O N N 87 CGU H H N N 88 CGU H2 H N N 89 CGU HA H N N 90 CGU HXT H N N 91 CGU HB2 H N N 92 CGU HB3 H N N 93 CGU HG H N N 94 CGU HE12 H N N 95 CGU HE22 H N N 96 CL CL CL N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LPS OT2 O N N 229 LPS C C N N 230 LPS OT1 O N N 231 LPS C12 C N S 232 LPS N N N N 233 LPS C11 C N N 234 LPS O12 O N N 235 LPS P P N R 236 LPS O13 O N N 237 LPS O14 O N N 238 LPS O11 O N N 239 LPS C1 C N N 240 LPS C2 C N R 241 LPS O21 O N N 242 LPS C3 C N N 243 LPS O31 O N N 244 LPS C31 C N R 245 LPS O32 O N N 246 LPS C32 C N N 247 LPS C33 C N N 248 LPS C34 C N N 249 LPS C35 C N N 250 LPS C36 C N N 251 LPS C37 C N N 252 LPS C38 C N N 253 LPS C39 C N N 254 LPS C40 C N N 255 LPS C41 C N N 256 LPS C42 C N N 257 LPS C43 C N N 258 LPS C44 C N N 259 LPS C45 C N N 260 LPS HT2 H N N 261 LPS H12 H N N 262 LPS HN1 H N N 263 LPS HN2 H N N 264 LPS H111 H N N 265 LPS H112 H N N 266 LPS H14 H N N 267 LPS H11 H N N 268 LPS H12A H N N 269 LPS H2 H N N 270 LPS H21 H N N 271 LPS H31A H N N 272 LPS H32A H N N 273 LPS H31 H N N 274 LPS H32 H N N 275 LPS H321 H N N 276 LPS H322 H N N 277 LPS H331 H N N 278 LPS H332 H N N 279 LPS H341 H N N 280 LPS H342 H N N 281 LPS H351 H N N 282 LPS H352 H N N 283 LPS H361 H N N 284 LPS H362 H N N 285 LPS H371 H N N 286 LPS H372 H N N 287 LPS H381 H N N 288 LPS H382 H N N 289 LPS H391 H N N 290 LPS H392 H N N 291 LPS H401 H N N 292 LPS H402 H N N 293 LPS H411 H N N 294 LPS H412 H N N 295 LPS H421 H N N 296 LPS H422 H N N 297 LPS H431 H N N 298 LPS H432 H N N 299 LPS H441 H N N 300 LPS H442 H N N 301 LPS H451 H N N 302 LPS H452 H N N 303 LPS H453 H N N 304 LYS N N N N 305 LYS CA C N S 306 LYS C C N N 307 LYS O O N N 308 LYS CB C N N 309 LYS CG C N N 310 LYS CD C N N 311 LYS CE C N N 312 LYS NZ N N N 313 LYS OXT O N N 314 LYS H H N N 315 LYS H2 H N N 316 LYS HA H N N 317 LYS HB2 H N N 318 LYS HB3 H N N 319 LYS HG2 H N N 320 LYS HG3 H N N 321 LYS HD2 H N N 322 LYS HD3 H N N 323 LYS HE2 H N N 324 LYS HE3 H N N 325 LYS HZ1 H N N 326 LYS HZ2 H N N 327 LYS HZ3 H N N 328 LYS HXT H N N 329 MET N N N N 330 MET CA C N S 331 MET C C N N 332 MET O O N N 333 MET CB C N N 334 MET CG C N N 335 MET SD S N N 336 MET CE C N N 337 MET OXT O N N 338 MET H H N N 339 MET H2 H N N 340 MET HA H N N 341 MET HB2 H N N 342 MET HB3 H N N 343 MET HG2 H N N 344 MET HG3 H N N 345 MET HE1 H N N 346 MET HE2 H N N 347 MET HE3 H N N 348 MET HXT H N N 349 NAG C1 C N R 350 NAG C2 C N R 351 NAG C3 C N R 352 NAG C4 C N S 353 NAG C5 C N R 354 NAG C6 C N N 355 NAG C7 C N N 356 NAG C8 C N N 357 NAG N2 N N N 358 NAG O1 O N N 359 NAG O3 O N N 360 NAG O4 O N N 361 NAG O5 O N N 362 NAG O6 O N N 363 NAG O7 O N N 364 NAG H1 H N N 365 NAG H2 H N N 366 NAG H3 H N N 367 NAG H4 H N N 368 NAG H5 H N N 369 NAG H61 H N N 370 NAG H62 H N N 371 NAG H81 H N N 372 NAG H82 H N N 373 NAG H83 H N N 374 NAG HN2 H N N 375 NAG HO1 H N N 376 NAG HO3 H N N 377 NAG HO4 H N N 378 NAG HO6 H N N 379 PHE N N N N 380 PHE CA C N S 381 PHE C C N N 382 PHE O O N N 383 PHE CB C N N 384 PHE CG C Y N 385 PHE CD1 C Y N 386 PHE CD2 C Y N 387 PHE CE1 C Y N 388 PHE CE2 C Y N 389 PHE CZ C Y N 390 PHE OXT O N N 391 PHE H H N N 392 PHE H2 H N N 393 PHE HA H N N 394 PHE HB2 H N N 395 PHE HB3 H N N 396 PHE HD1 H N N 397 PHE HD2 H N N 398 PHE HE1 H N N 399 PHE HE2 H N N 400 PHE HZ H N N 401 PHE HXT H N N 402 PRO N N N N 403 PRO CA C N S 404 PRO C C N N 405 PRO O O N N 406 PRO CB C N N 407 PRO CG C N N 408 PRO CD C N N 409 PRO OXT O N N 410 PRO H H N N 411 PRO HA H N N 412 PRO HB2 H N N 413 PRO HB3 H N N 414 PRO HG2 H N N 415 PRO HG3 H N N 416 PRO HD2 H N N 417 PRO HD3 H N N 418 PRO HXT H N N 419 SER N N N N 420 SER CA C N S 421 SER C C N N 422 SER O O N N 423 SER CB C N N 424 SER OG O N N 425 SER OXT O N N 426 SER H H N N 427 SER H2 H N N 428 SER HA H N N 429 SER HB2 H N N 430 SER HB3 H N N 431 SER HG H N N 432 SER HXT H N N 433 THR N N N N 434 THR CA C N S 435 THR C C N N 436 THR O O N N 437 THR CB C N R 438 THR OG1 O N N 439 THR CG2 C N N 440 THR OXT O N N 441 THR H H N N 442 THR H2 H N N 443 THR HA H N N 444 THR HB H N N 445 THR HG1 H N N 446 THR HG21 H N N 447 THR HG22 H N N 448 THR HG23 H N N 449 THR HXT H N N 450 TRP N N N N 451 TRP CA C N S 452 TRP C C N N 453 TRP O O N N 454 TRP CB C N N 455 TRP CG C Y N 456 TRP CD1 C Y N 457 TRP CD2 C Y N 458 TRP NE1 N Y N 459 TRP CE2 C Y N 460 TRP CE3 C Y N 461 TRP CZ2 C Y N 462 TRP CZ3 C Y N 463 TRP CH2 C Y N 464 TRP OXT O N N 465 TRP H H N N 466 TRP H2 H N N 467 TRP HA H N N 468 TRP HB2 H N N 469 TRP HB3 H N N 470 TRP HD1 H N N 471 TRP HE1 H N N 472 TRP HE3 H N N 473 TRP HZ2 H N N 474 TRP HZ3 H N N 475 TRP HH2 H N N 476 TRP HXT H N N 477 TYR N N N N 478 TYR CA C N S 479 TYR C C N N 480 TYR O O N N 481 TYR CB C N N 482 TYR CG C Y N 483 TYR CD1 C Y N 484 TYR CD2 C Y N 485 TYR CE1 C Y N 486 TYR CE2 C Y N 487 TYR CZ C Y N 488 TYR OH O N N 489 TYR OXT O N N 490 TYR H H N N 491 TYR H2 H N N 492 TYR HA H N N 493 TYR HB2 H N N 494 TYR HB3 H N N 495 TYR HD1 H N N 496 TYR HD2 H N N 497 TYR HE1 H N N 498 TYR HE2 H N N 499 TYR HH H N N 500 TYR HXT H N N 501 VAL N N N N 502 VAL CA C N S 503 VAL C C N N 504 VAL O O N N 505 VAL CB C N N 506 VAL CG1 C N N 507 VAL CG2 C N N 508 VAL OXT O N N 509 VAL H H N N 510 VAL H2 H N N 511 VAL HA H N N 512 VAL HB H N N 513 VAL HG11 H N N 514 VAL HG12 H N N 515 VAL HG13 H N N 516 VAL HG21 H N N 517 VAL HG22 H N N 518 VAL HG23 H N N 519 VAL HXT H N N 520 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CGU N CA sing N N 70 CGU N H sing N N 71 CGU N H2 sing N N 72 CGU CA C sing N N 73 CGU CA CB sing N N 74 CGU CA HA sing N N 75 CGU C O doub N N 76 CGU C OXT sing N N 77 CGU OXT HXT sing N N 78 CGU CB CG sing N N 79 CGU CB HB2 sing N N 80 CGU CB HB3 sing N N 81 CGU CG CD1 sing N N 82 CGU CG CD2 sing N N 83 CGU CG HG sing N N 84 CGU CD1 OE11 doub N N 85 CGU CD1 OE12 sing N N 86 CGU CD2 OE21 doub N N 87 CGU CD2 OE22 sing N N 88 CGU OE12 HE12 sing N N 89 CGU OE22 HE22 sing N N 90 CYS N CA sing N N 91 CYS N H sing N N 92 CYS N H2 sing N N 93 CYS CA C sing N N 94 CYS CA CB sing N N 95 CYS CA HA sing N N 96 CYS C O doub N N 97 CYS C OXT sing N N 98 CYS CB SG sing N N 99 CYS CB HB2 sing N N 100 CYS CB HB3 sing N N 101 CYS SG HG sing N N 102 CYS OXT HXT sing N N 103 GLN N CA sing N N 104 GLN N H sing N N 105 GLN N H2 sing N N 106 GLN CA C sing N N 107 GLN CA CB sing N N 108 GLN CA HA sing N N 109 GLN C O doub N N 110 GLN C OXT sing N N 111 GLN CB CG sing N N 112 GLN CB HB2 sing N N 113 GLN CB HB3 sing N N 114 GLN CG CD sing N N 115 GLN CG HG2 sing N N 116 GLN CG HG3 sing N N 117 GLN CD OE1 doub N N 118 GLN CD NE2 sing N N 119 GLN NE2 HE21 sing N N 120 GLN NE2 HE22 sing N N 121 GLN OXT HXT sing N N 122 GLU N CA sing N N 123 GLU N H sing N N 124 GLU N H2 sing N N 125 GLU CA C sing N N 126 GLU CA CB sing N N 127 GLU CA HA sing N N 128 GLU C O doub N N 129 GLU C OXT sing N N 130 GLU CB CG sing N N 131 GLU CB HB2 sing N N 132 GLU CB HB3 sing N N 133 GLU CG CD sing N N 134 GLU CG HG2 sing N N 135 GLU CG HG3 sing N N 136 GLU CD OE1 doub N N 137 GLU CD OE2 sing N N 138 GLU OE2 HE2 sing N N 139 GLU OXT HXT sing N N 140 GLY N CA sing N N 141 GLY N H sing N N 142 GLY N H2 sing N N 143 GLY CA C sing N N 144 GLY CA HA2 sing N N 145 GLY CA HA3 sing N N 146 GLY C O doub N N 147 GLY C OXT sing N N 148 GLY OXT HXT sing N N 149 HIS N CA sing N N 150 HIS N H sing N N 151 HIS N H2 sing N N 152 HIS CA C sing N N 153 HIS CA CB sing N N 154 HIS CA HA sing N N 155 HIS C O doub N N 156 HIS C OXT sing N N 157 HIS CB CG sing N N 158 HIS CB HB2 sing N N 159 HIS CB HB3 sing N N 160 HIS CG ND1 sing Y N 161 HIS CG CD2 doub Y N 162 HIS ND1 CE1 doub Y N 163 HIS ND1 HD1 sing N N 164 HIS CD2 NE2 sing Y N 165 HIS CD2 HD2 sing N N 166 HIS CE1 NE2 sing Y N 167 HIS CE1 HE1 sing N N 168 HIS NE2 HE2 sing N N 169 HIS OXT HXT sing N N 170 HOH O H1 sing N N 171 HOH O H2 sing N N 172 ILE N CA sing N N 173 ILE N H sing N N 174 ILE N H2 sing N N 175 ILE CA C sing N N 176 ILE CA CB sing N N 177 ILE CA HA sing N N 178 ILE C O doub N N 179 ILE C OXT sing N N 180 ILE CB CG1 sing N N 181 ILE CB CG2 sing N N 182 ILE CB HB sing N N 183 ILE CG1 CD1 sing N N 184 ILE CG1 HG12 sing N N 185 ILE CG1 HG13 sing N N 186 ILE CG2 HG21 sing N N 187 ILE CG2 HG22 sing N N 188 ILE CG2 HG23 sing N N 189 ILE CD1 HD11 sing N N 190 ILE CD1 HD12 sing N N 191 ILE CD1 HD13 sing N N 192 ILE OXT HXT sing N N 193 LEU N CA sing N N 194 LEU N H sing N N 195 LEU N H2 sing N N 196 LEU CA C sing N N 197 LEU CA CB sing N N 198 LEU CA HA sing N N 199 LEU C O doub N N 200 LEU C OXT sing N N 201 LEU CB CG sing N N 202 LEU CB HB2 sing N N 203 LEU CB HB3 sing N N 204 LEU CG CD1 sing N N 205 LEU CG CD2 sing N N 206 LEU CG HG sing N N 207 LEU CD1 HD11 sing N N 208 LEU CD1 HD12 sing N N 209 LEU CD1 HD13 sing N N 210 LEU CD2 HD21 sing N N 211 LEU CD2 HD22 sing N N 212 LEU CD2 HD23 sing N N 213 LEU OXT HXT sing N N 214 LPS OT2 C sing N N 215 LPS OT2 HT2 sing N N 216 LPS C OT1 doub N N 217 LPS C C12 sing N N 218 LPS C12 N sing N N 219 LPS C12 C11 sing N N 220 LPS C12 H12 sing N N 221 LPS N HN1 sing N N 222 LPS N HN2 sing N N 223 LPS C11 O12 sing N N 224 LPS C11 H111 sing N N 225 LPS C11 H112 sing N N 226 LPS O12 P sing N N 227 LPS P O13 doub N N 228 LPS P O14 sing N N 229 LPS P O11 sing N N 230 LPS O14 H14 sing N N 231 LPS O11 C1 sing N N 232 LPS C1 C2 sing N N 233 LPS C1 H11 sing N N 234 LPS C1 H12A sing N N 235 LPS C2 O21 sing N N 236 LPS C2 C3 sing N N 237 LPS C2 H2 sing N N 238 LPS O21 H21 sing N N 239 LPS C3 O31 sing N N 240 LPS C3 H31A sing N N 241 LPS C3 H32A sing N N 242 LPS O31 C31 sing N N 243 LPS C31 O32 sing N N 244 LPS C31 C32 sing N N 245 LPS C31 H31 sing N N 246 LPS O32 H32 sing N N 247 LPS C32 C33 sing N N 248 LPS C32 H321 sing N N 249 LPS C32 H322 sing N N 250 LPS C33 C34 sing N N 251 LPS C33 H331 sing N N 252 LPS C33 H332 sing N N 253 LPS C34 C35 sing N N 254 LPS C34 H341 sing N N 255 LPS C34 H342 sing N N 256 LPS C35 C36 sing N N 257 LPS C35 H351 sing N N 258 LPS C35 H352 sing N N 259 LPS C36 C37 sing N N 260 LPS C36 H361 sing N N 261 LPS C36 H362 sing N N 262 LPS C37 C38 sing N N 263 LPS C37 H371 sing N N 264 LPS C37 H372 sing N N 265 LPS C38 C39 sing N N 266 LPS C38 H381 sing N N 267 LPS C38 H382 sing N N 268 LPS C39 C40 sing N N 269 LPS C39 H391 sing N N 270 LPS C39 H392 sing N N 271 LPS C40 C41 sing N N 272 LPS C40 H401 sing N N 273 LPS C40 H402 sing N N 274 LPS C41 C42 sing N N 275 LPS C41 H411 sing N N 276 LPS C41 H412 sing N N 277 LPS C42 C43 sing N N 278 LPS C42 H421 sing N N 279 LPS C42 H422 sing N N 280 LPS C43 C44 sing N N 281 LPS C43 H431 sing N N 282 LPS C43 H432 sing N N 283 LPS C44 C45 sing N N 284 LPS C44 H441 sing N N 285 LPS C44 H442 sing N N 286 LPS C45 H451 sing N N 287 LPS C45 H452 sing N N 288 LPS C45 H453 sing N N 289 LYS N CA sing N N 290 LYS N H sing N N 291 LYS N H2 sing N N 292 LYS CA C sing N N 293 LYS CA CB sing N N 294 LYS CA HA sing N N 295 LYS C O doub N N 296 LYS C OXT sing N N 297 LYS CB CG sing N N 298 LYS CB HB2 sing N N 299 LYS CB HB3 sing N N 300 LYS CG CD sing N N 301 LYS CG HG2 sing N N 302 LYS CG HG3 sing N N 303 LYS CD CE sing N N 304 LYS CD HD2 sing N N 305 LYS CD HD3 sing N N 306 LYS CE NZ sing N N 307 LYS CE HE2 sing N N 308 LYS CE HE3 sing N N 309 LYS NZ HZ1 sing N N 310 LYS NZ HZ2 sing N N 311 LYS NZ HZ3 sing N N 312 LYS OXT HXT sing N N 313 MET N CA sing N N 314 MET N H sing N N 315 MET N H2 sing N N 316 MET CA C sing N N 317 MET CA CB sing N N 318 MET CA HA sing N N 319 MET C O doub N N 320 MET C OXT sing N N 321 MET CB CG sing N N 322 MET CB HB2 sing N N 323 MET CB HB3 sing N N 324 MET CG SD sing N N 325 MET CG HG2 sing N N 326 MET CG HG3 sing N N 327 MET SD CE sing N N 328 MET CE HE1 sing N N 329 MET CE HE2 sing N N 330 MET CE HE3 sing N N 331 MET OXT HXT sing N N 332 NAG C1 C2 sing N N 333 NAG C1 O1 sing N N 334 NAG C1 O5 sing N N 335 NAG C1 H1 sing N N 336 NAG C2 C3 sing N N 337 NAG C2 N2 sing N N 338 NAG C2 H2 sing N N 339 NAG C3 C4 sing N N 340 NAG C3 O3 sing N N 341 NAG C3 H3 sing N N 342 NAG C4 C5 sing N N 343 NAG C4 O4 sing N N 344 NAG C4 H4 sing N N 345 NAG C5 C6 sing N N 346 NAG C5 O5 sing N N 347 NAG C5 H5 sing N N 348 NAG C6 O6 sing N N 349 NAG C6 H61 sing N N 350 NAG C6 H62 sing N N 351 NAG C7 C8 sing N N 352 NAG C7 N2 sing N N 353 NAG C7 O7 doub N N 354 NAG C8 H81 sing N N 355 NAG C8 H82 sing N N 356 NAG C8 H83 sing N N 357 NAG N2 HN2 sing N N 358 NAG O1 HO1 sing N N 359 NAG O3 HO3 sing N N 360 NAG O4 HO4 sing N N 361 NAG O6 HO6 sing N N 362 PHE N CA sing N N 363 PHE N H sing N N 364 PHE N H2 sing N N 365 PHE CA C sing N N 366 PHE CA CB sing N N 367 PHE CA HA sing N N 368 PHE C O doub N N 369 PHE C OXT sing N N 370 PHE CB CG sing N N 371 PHE CB HB2 sing N N 372 PHE CB HB3 sing N N 373 PHE CG CD1 doub Y N 374 PHE CG CD2 sing Y N 375 PHE CD1 CE1 sing Y N 376 PHE CD1 HD1 sing N N 377 PHE CD2 CE2 doub Y N 378 PHE CD2 HD2 sing N N 379 PHE CE1 CZ doub Y N 380 PHE CE1 HE1 sing N N 381 PHE CE2 CZ sing Y N 382 PHE CE2 HE2 sing N N 383 PHE CZ HZ sing N N 384 PHE OXT HXT sing N N 385 PRO N CA sing N N 386 PRO N CD sing N N 387 PRO N H sing N N 388 PRO CA C sing N N 389 PRO CA CB sing N N 390 PRO CA HA sing N N 391 PRO C O doub N N 392 PRO C OXT sing N N 393 PRO CB CG sing N N 394 PRO CB HB2 sing N N 395 PRO CB HB3 sing N N 396 PRO CG CD sing N N 397 PRO CG HG2 sing N N 398 PRO CG HG3 sing N N 399 PRO CD HD2 sing N N 400 PRO CD HD3 sing N N 401 PRO OXT HXT sing N N 402 SER N CA sing N N 403 SER N H sing N N 404 SER N H2 sing N N 405 SER CA C sing N N 406 SER CA CB sing N N 407 SER CA HA sing N N 408 SER C O doub N N 409 SER C OXT sing N N 410 SER CB OG sing N N 411 SER CB HB2 sing N N 412 SER CB HB3 sing N N 413 SER OG HG sing N N 414 SER OXT HXT sing N N 415 THR N CA sing N N 416 THR N H sing N N 417 THR N H2 sing N N 418 THR CA C sing N N 419 THR CA CB sing N N 420 THR CA HA sing N N 421 THR C O doub N N 422 THR C OXT sing N N 423 THR CB OG1 sing N N 424 THR CB CG2 sing N N 425 THR CB HB sing N N 426 THR OG1 HG1 sing N N 427 THR CG2 HG21 sing N N 428 THR CG2 HG22 sing N N 429 THR CG2 HG23 sing N N 430 THR OXT HXT sing N N 431 TRP N CA sing N N 432 TRP N H sing N N 433 TRP N H2 sing N N 434 TRP CA C sing N N 435 TRP CA CB sing N N 436 TRP CA HA sing N N 437 TRP C O doub N N 438 TRP C OXT sing N N 439 TRP CB CG sing N N 440 TRP CB HB2 sing N N 441 TRP CB HB3 sing N N 442 TRP CG CD1 doub Y N 443 TRP CG CD2 sing Y N 444 TRP CD1 NE1 sing Y N 445 TRP CD1 HD1 sing N N 446 TRP CD2 CE2 doub Y N 447 TRP CD2 CE3 sing Y N 448 TRP NE1 CE2 sing Y N 449 TRP NE1 HE1 sing N N 450 TRP CE2 CZ2 sing Y N 451 TRP CE3 CZ3 doub Y N 452 TRP CE3 HE3 sing N N 453 TRP CZ2 CH2 doub Y N 454 TRP CZ2 HZ2 sing N N 455 TRP CZ3 CH2 sing Y N 456 TRP CZ3 HZ3 sing N N 457 TRP CH2 HH2 sing N N 458 TRP OXT HXT sing N N 459 TYR N CA sing N N 460 TYR N H sing N N 461 TYR N H2 sing N N 462 TYR CA C sing N N 463 TYR CA CB sing N N 464 TYR CA HA sing N N 465 TYR C O doub N N 466 TYR C OXT sing N N 467 TYR CB CG sing N N 468 TYR CB HB2 sing N N 469 TYR CB HB3 sing N N 470 TYR CG CD1 doub Y N 471 TYR CG CD2 sing Y N 472 TYR CD1 CE1 sing Y N 473 TYR CD1 HD1 sing N N 474 TYR CD2 CE2 doub Y N 475 TYR CD2 HD2 sing N N 476 TYR CE1 CZ doub Y N 477 TYR CE1 HE1 sing N N 478 TYR CE2 CZ sing Y N 479 TYR CE2 HE2 sing N N 480 TYR CZ OH sing N N 481 TYR OH HH sing N N 482 TYR OXT HXT sing N N 483 VAL N CA sing N N 484 VAL N H sing N N 485 VAL N H2 sing N N 486 VAL CA C sing N N 487 VAL CA CB sing N N 488 VAL CA HA sing N N 489 VAL C O doub N N 490 VAL C OXT sing N N 491 VAL CB CG1 sing N N 492 VAL CB CG2 sing N N 493 VAL CB HB sing N N 494 VAL CG1 HG11 sing N N 495 VAL CG1 HG12 sing N N 496 VAL CG1 HG13 sing N N 497 VAL CG2 HG21 sing N N 498 VAL CG2 HG22 sing N N 499 VAL CG2 HG23 sing N N 500 VAL OXT HXT sing N N 501 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 C NAG 301 n B 2 NAG 2 B NAG 2 C NAG 302 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'CALCIUM ION' CA 5 'CHLORIDE ION' CL 6 'O-{HYDROXY[((2R)-2-HYDROXY-3-{[(1S)-1-HYDROXYPENTADECYL]OXY}PROPYL)OXY]PHOSPHORYL}-L-SERINE' LPS 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NL1 _pdbx_initial_refinement_model.details ? #