HEADER TRANSFERASE 06-JAN-03 1NL4 TITLE CRYSTAL STRUCTURE OF RAT FARNESYL TRANSFERASE IN COMPLEX WITH A POTENT TITLE 2 BIPHENYL INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUE 55-366; COMPND 5 SYNONYM: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT, RAS PROTEINS COMPND 6 PRENYLTRANSFERASE ALPHA, FTASE-ALPHA; COMPND 7 EC: 2.5.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: RESIDUE 23-423; COMPND 14 SYNONYM: CAAX FARNESYLTRANSFERASE BETA SUBUNIT, RAS PROTEINS COMPND 15 PRENYLTRANSFERASE BETA, FTASE-BETA; COMPND 16 EC: 2.5.1.-; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: FNTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: FNTB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, PRENYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.CURTIN,A.S.FLORJANCIC,J.COHEN,W.-J.GU,D.J.FROST,S.W.MUCHMORE, AUTHOR 2 H.L.SHAM REVDAT 5 14-FEB-24 1NL4 1 REMARK LINK REVDAT 4 11-OCT-17 1NL4 1 REMARK REVDAT 3 24-FEB-09 1NL4 1 VERSN REVDAT 2 22-APR-03 1NL4 1 JRNL REVDAT 1 11-FEB-03 1NL4 0 JRNL AUTH M.L.CURTIN,A.S.FLORJANCIC,J.COHEN,W.-J.GU,D.J.FROST, JRNL AUTH 2 S.W.MUCHMORE,H.L.SHAM JRNL TITL NOVEL AND SELECTIVE IMIDAZOLE-CONTAINING BIPHENYL INHIBITORS JRNL TITL 2 OF PROTEIN FARNESYLTRANSFERASE JRNL REF BIOORG.MED.CHEM.LETT. V. 13 1367 2003 JRNL REFN ISSN 0960-894X JRNL PMID 12657284 JRNL DOI 10.1016/S0960-894X(03)00096-9 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 5.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 26759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2140 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5815 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUILIBRIATE EQUAL VOLUMES OF 10MG/ML REMARK 280 PROTEIN STOCK SOLUTION (WITH 50MM TRIS, 1MM DTT, 1MM NAN3, 5 MM REMARK 280 ZNCL2-PH 8.2) AND WELL SOLUTION CONTAINING 100MM KCL, 100MM REMARK 280 SODIUM ACETATE, AT PH 4.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.04100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.08200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.56150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.60250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.52050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 60 OG1 THR A 62 2.01 REMARK 500 NH2 ARG A 287 NH1 ARG A 291 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 64 CB VAL A 64 CG1 -0.151 REMARK 500 ARG A 287 NE ARG A 287 CZ 0.167 REMARK 500 ARG A 287 CZ ARG A 287 NH1 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 61 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO A 61 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 VAL A 64 CG1 - CB - CG2 ANGL. DEV. = -22.7 DEGREES REMARK 500 VAL A 64 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 ASP A 68 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 68 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 PRO A 84 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 PRO A 293 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS A 366 CA - C - O ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 88 53.97 31.28 REMARK 500 ASN A 127 82.53 -160.45 REMARK 500 GLN A 145 73.25 48.39 REMARK 500 PRO A 163 0.45 -63.57 REMARK 500 GLU A 185 -72.06 -41.97 REMARK 500 ASP A 196 83.25 -161.54 REMARK 500 ALA A 197 7.72 -51.99 REMARK 500 LEU A 215 49.61 -105.42 REMARK 500 ASP A 230 83.44 -167.84 REMARK 500 LYS A 268 42.12 -71.76 REMARK 500 LEU A 269 -35.82 -150.46 REMARK 500 GLN A 285 -7.72 -56.48 REMARK 500 ASP A 286 64.92 -101.90 REMARK 500 ARG A 287 -7.08 158.45 REMARK 500 TYR A 292 79.33 -102.36 REMARK 500 LEU A 295 -70.78 -43.37 REMARK 500 HIS A 306 43.54 -150.14 REMARK 500 GLN A 326 124.74 65.24 REMARK 500 ARG A 352 58.68 -117.33 REMARK 500 SER B 39 -12.70 77.88 REMARK 500 GLN B 74 57.01 -62.22 REMARK 500 CYS B 95 4.44 -57.60 REMARK 500 ASP B 97 -14.94 -48.78 REMARK 500 SER B 99 28.49 -143.56 REMARK 500 PRO B 119 128.36 -35.43 REMARK 500 GLN B 120 -5.75 -52.62 REMARK 500 ASN B 215 64.95 61.28 REMARK 500 PHE B 222 30.69 -98.55 REMARK 500 LYS B 264 29.65 -141.81 REMARK 500 ARG B 266 -8.27 -50.85 REMARK 500 TYR B 300 1.07 -68.33 REMARK 500 ARG B 313 -70.06 -39.68 REMARK 500 GLN B 318 43.11 -96.73 REMARK 500 ALA B 322 8.39 -57.63 REMARK 500 SER B 326 -21.43 -141.39 REMARK 500 MET B 329 47.15 -75.37 REMARK 500 HIS B 331 83.42 -62.48 REMARK 500 SER B 378 49.88 -177.82 REMARK 500 LEU B 382 68.44 -160.33 REMARK 500 VAL B 389 122.63 -36.42 REMARK 500 PRO B 399 0.69 -61.48 REMARK 500 PRO B 421 79.82 -53.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 166 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FTL B 1 N3 REMARK 620 2 ASP B 297 OD1 110.0 REMARK 620 3 ASP B 297 OD2 68.7 60.7 REMARK 620 4 CYS B 299 SG 127.4 98.1 89.6 REMARK 620 5 HIS B 362 NE2 88.0 91.3 131.2 136.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HFP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FTL B 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR INDICATES THAT THIS REPRESENTS REMARK 999 AN INCONSEQUENTIAL MUTATION DBREF 1NL4 A 55 366 UNP Q04631 PFTA_RAT 55 366 DBREF 1NL4 B 23 423 UNP Q02293 PFTB_RAT 23 423 SEQADV 1NL4 THR A 156 UNP Q04631 ILE 156 SEE REMARK 999 SEQRES 1 A 312 PHE LEU SER LEU ASP SER PRO THR TYR VAL LEU TYR ARG SEQRES 2 A 312 ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL PRO GLN SEQRES 3 A 312 ASN ASP GLY PRO SER PRO VAL VAL GLN ILE ILE TYR SER SEQRES 4 A 312 GLU LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG ALA VAL SEQRES 5 A 312 LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE LYS LEU SEQRES 6 A 312 THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN TYR THR SEQRES 7 A 312 VAL TRP HIS PHE ARG ARG VAL LEU LEU ARG SER LEU GLN SEQRES 8 A 312 LYS ASP LEU GLN GLU GLU MET ASN TYR ILE THR ALA ILE SEQRES 9 A 312 ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP HIS HIS SEQRES 10 A 312 ARG ARG VAL LEU VAL GLU TRP LEU LYS ASP PRO SER GLN SEQRES 11 A 312 GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN ASP ALA SEQRES 12 A 312 LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP VAL ILE SEQRES 13 A 312 GLN GLU PHE ARG LEU TRP ASP ASN GLU LEU GLN TYR VAL SEQRES 14 A 312 ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN SER VAL SEQRES 15 A 312 TRP ASN GLN ARG HIS PHE VAL ILE SER ASN THR THR GLY SEQRES 16 A 312 TYR SER ASP ARG ALA VAL LEU GLU ARG GLU VAL GLN TYR SEQRES 17 A 312 THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN GLU SER SEQRES 18 A 312 ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP ARG GLY SEQRES 19 A 312 LEU SER ARG TYR PRO ASN LEU LEU ASN GLN LEU LEU ASP SEQRES 20 A 312 LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE ALA PHE SEQRES 21 A 312 LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN GLN CYS SEQRES 22 A 312 ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU GLU LEU SEQRES 23 A 312 CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE ARG LYS SEQRES 24 A 312 GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN SER LYS SEQRES 1 B 401 LEU TYR SER LEU ARG PRO GLU HIS ALA ARG GLU ARG LEU SEQRES 2 B 401 GLN ASP ASP SER VAL GLU THR VAL THR SER ILE GLU GLN SEQRES 3 B 401 ALA LYS VAL GLU GLU LYS ILE GLN GLU VAL PHE SER SER SEQRES 4 B 401 TYR LYS PHE ASN HIS LEU VAL PRO ARG LEU VAL LEU GLN SEQRES 5 B 401 ARG GLU LYS HIS PHE HIS TYR LEU LYS ARG GLY LEU ARG SEQRES 6 B 401 GLN LEU THR ASP ALA TYR GLU CYS LEU ASP ALA SER ARG SEQRES 7 B 401 PRO TRP LEU CYS TYR TRP ILE LEU HIS SER LEU GLU LEU SEQRES 8 B 401 LEU ASP GLU PRO ILE PRO GLN ILE VAL ALA THR ASP VAL SEQRES 9 B 401 CYS GLN PHE LEU GLU LEU CYS GLN SER PRO ASP GLY GLY SEQRES 10 B 401 PHE GLY GLY GLY PRO GLY GLN TYR PRO HIS LEU ALA PRO SEQRES 11 B 401 THR TYR ALA ALA VAL ASN ALA LEU CYS ILE ILE GLY THR SEQRES 12 B 401 GLU GLU ALA TYR ASN VAL ILE ASN ARG GLU LYS LEU LEU SEQRES 13 B 401 GLN TYR LEU TYR SER LEU LYS GLN PRO ASP GLY SER PHE SEQRES 14 B 401 LEU MET HIS VAL GLY GLY GLU VAL ASP VAL ARG SER ALA SEQRES 15 B 401 TYR CYS ALA ALA SER VAL ALA SER LEU THR ASN ILE ILE SEQRES 16 B 401 THR PRO ASP LEU PHE GLU GLY THR ALA GLU TRP ILE ALA SEQRES 17 B 401 ARG CYS GLN ASN TRP GLU GLY GLY ILE GLY GLY VAL PRO SEQRES 18 B 401 GLY MET GLU ALA HIS GLY GLY TYR THR PHE CYS GLY LEU SEQRES 19 B 401 ALA ALA LEU VAL ILE LEU LYS LYS GLU ARG SER LEU ASN SEQRES 20 B 401 LEU LYS SER LEU LEU GLN TRP VAL THR SER ARG GLN MET SEQRES 21 B 401 ARG PHE GLU GLY GLY PHE GLN GLY ARG CYS ASN LYS LEU SEQRES 22 B 401 VAL ASP GLY CYS TYR SER PHE TRP GLN ALA GLY LEU LEU SEQRES 23 B 401 PRO LEU LEU HIS ARG ALA LEU HIS ALA GLN GLY ASP PRO SEQRES 24 B 401 ALA LEU SER MET SER HIS TRP MET PHE HIS GLN GLN ALA SEQRES 25 B 401 LEU GLN GLU TYR ILE LEU MET CYS CYS GLN CYS PRO ALA SEQRES 26 B 401 GLY GLY LEU LEU ASP LYS PRO GLY LYS SER ARG ASP PHE SEQRES 27 B 401 TYR HIS THR CYS TYR CYS LEU SER GLY LEU SER ILE ALA SEQRES 28 B 401 GLN HIS PHE GLY SER GLY ALA MET LEU HIS ASP VAL VAL SEQRES 29 B 401 MET GLY VAL PRO GLU ASN VAL LEU GLN PRO THR HIS PRO SEQRES 30 B 401 VAL TYR ASN ILE GLY PRO ASP LYS VAL ILE GLN ALA THR SEQRES 31 B 401 THR HIS PHE LEU GLN LYS PRO VAL PRO GLY PHE HET ZN B 500 1 HET HFP B 501 20 HET FTL B 1 35 HETNAM ZN ZINC ION HETNAM HFP ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID HETNAM FTL 4-[(3-CYANO-BENZYL)-(3-METHYL-3H-IMIDAZOL-4-YLMETHYL)- HETNAM 2 FTL AMINO]-2-NAPHTHALEN-1-YL-BENZONITRILE FORMUL 3 ZN ZN 2+ FORMUL 4 HFP C15 H33 O4 P FORMUL 5 FTL C30 H23 N5 HELIX 1 1 ARG A 69 ALA A 73 5 5 HELIX 2 2 SER A 93 ASP A 110 1 18 HELIX 3 3 SER A 113 ASN A 127 1 15 HELIX 4 4 ASN A 130 LEU A 144 1 15 HELIX 5 5 ASP A 147 GLN A 162 1 16 HELIX 6 6 ASN A 165 LYS A 180 1 16 HELIX 7 7 GLN A 184 ASP A 196 1 13 HELIX 8 8 ASN A 199 PHE A 213 1 15 HELIX 9 9 ASN A 218 ASP A 230 1 13 HELIX 10 10 ASN A 233 THR A 248 1 16 HELIX 11 11 ASP A 252 LYS A 268 1 17 HELIX 12 12 ASN A 273 GLN A 285 1 13 HELIX 13 13 GLY A 288 ARG A 291 5 4 HELIX 14 14 TYR A 292 HIS A 306 1 15 HELIX 15 15 SER A 308 ASN A 325 1 18 HELIX 16 16 ASN A 329 GLU A 347 1 19 HELIX 17 17 ASP A 349 ILE A 351 5 3 HELIX 18 18 ARG A 352 LYS A 366 1 15 HELIX 19 19 PRO B 28 ARG B 34 5 7 HELIX 20 20 THR B 42 HIS B 66 1 25 HELIX 21 21 GLN B 74 LEU B 86 1 13 HELIX 22 22 THR B 90 ASP B 97 5 8 HELIX 23 23 SER B 99 LEU B 114 1 16 HELIX 24 24 ILE B 121 GLN B 134 1 14 HELIX 25 25 HIS B 149 GLY B 164 1 16 HELIX 26 26 THR B 165 ILE B 172 1 8 HELIX 27 27 ASN B 173 LYS B 185 1 13 HELIX 28 28 ASP B 200 ASN B 215 1 16 HELIX 29 29 GLY B 224 CYS B 232 1 9 HELIX 30 30 HIS B 248 LEU B 262 1 15 HELIX 31 31 LYS B 264 LEU B 268 5 5 HELIX 32 32 ASN B 269 SER B 279 1 11 HELIX 33 33 CYS B 299 GLN B 304 1 6 HELIX 34 34 GLY B 306 GLN B 318 1 13 HELIX 35 35 HIS B 331 CYS B 343 1 13 HELIX 36 36 ASP B 359 HIS B 375 1 17 HELIX 37 37 VAL B 389 VAL B 393 5 5 HELIX 38 38 GLY B 404 GLN B 417 1 14 SHEET 1 A 2 GLN A 89 ILE A 90 0 SHEET 2 A 2 GLN B 88 LEU B 89 1 O LEU B 89 N GLN A 89 LINK N3 FTL B 1 ZN ZN B 500 1555 1555 2.35 LINK OD1 ASP B 297 ZN ZN B 500 1555 1555 2.30 LINK OD2 ASP B 297 ZN ZN B 500 1555 1555 2.05 LINK SG CYS B 299 ZN ZN B 500 1555 1555 2.07 LINK NE2 HIS B 362 ZN ZN B 500 1555 1555 2.24 SITE 1 AC1 4 FTL B 1 ASP B 297 CYS B 299 HIS B 362 SITE 1 AC2 11 LYS A 164 TYR A 166 FTL B 1 TRP B 102 SITE 2 AC2 11 TYR B 205 HIS B 248 TYR B 251 ARG B 291 SITE 3 AC2 11 TYR B 300 TRP B 303 TYR B 361 SITE 1 AC3 11 TYR A 166 TRP B 102 TRP B 106 ASP B 297 SITE 2 AC3 11 ASP B 352 ASP B 359 PHE B 360 TYR B 361 SITE 3 AC3 11 HIS B 362 ZN B 500 HFP B 501 CRYST1 168.620 168.620 69.123 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005930 0.003424 0.000000 0.00000 SCALE2 0.000000 0.006848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014467 0.00000