HEADER TRANSFERASE 07-JAN-03 1NLM TITLE CRYSTAL STRUCTURE OF MURG:GLCNAC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE) COMPND 3 PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: PENTAPEPTIDE, PYROPHOSPHORYL-UNDECAPRENOL N- COMPND 6 ACETYLGLUCOSAMINE TRANSFERASE EC 2.4.1.-, UNDECAPRENYL-PP-MURNAC- COMPND 7 PENTAPEPTIDE-UDPGLCNAC GLCNAC TRANSFERASE; COMPND 8 EC: 2.4.1.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MURG OR B0090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS ROSSMANN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HU,L.CHEN,S.HA,B.GROSS,B.FALCONE,D.WALKER,M.MOKHTARZADEH,S.WALKER REVDAT 4 16-AUG-23 1NLM 1 REMARK SEQADV REVDAT 3 13-JUL-11 1NLM 1 VERSN REVDAT 2 24-FEB-09 1NLM 1 VERSN REVDAT 1 11-FEB-03 1NLM 0 JRNL AUTH Y.HU,L.CHEN,S.HA,B.GROSS,B.FALCONE,D.WALKER,M.MOKHTARZADEH, JRNL AUTH 2 S.WALKER JRNL TITL CRYSTAL STRUCTURE OF MURG:UDP-GLCNAC COMPLEX REVEALS COMMON JRNL TITL 2 STRUCTURAL PRINCIPLES OF A SUPERFAMILY OF JRNL TITL 3 GLYCOSYLTRANSFERASES JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 845 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12538870 JRNL DOI 10.1073/PNAS.0235749100 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 871929.100 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 25853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2576 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3239 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 334 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5262 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.84000 REMARK 3 B22 (A**2) : -4.88000 REMARK 3 B33 (A**2) : -1.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 51.20 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : UDPAG2ENDO.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GOL.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : UDPAG1.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : BENT CONICAL SI-MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26835 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1FOK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NAMES, TRITON X-100, DTT, REMARK 280 UDP-GLCNAC, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.35150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.12250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.82550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.12250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.35150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.82550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 LEU A 357 REMARK 465 GLU A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 LEU B 357 REMARK 465 GLU B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 198 CA LEU B 198 CB 1.081 REMARK 500 LEU B 198 CB LEU B 198 CG -1.521 REMARK 500 ASP B 211 CA ASP B 211 CB 1.006 REMARK 500 ASP B 211 CB ASP B 211 CG -1.513 REMARK 500 PHE B 279 CD1 PHE B 279 CE1 1.404 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 198 CB - CA - C ANGL. DEV. = 32.5 DEGREES REMARK 500 LEU B 198 N - CA - CB ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP B 211 CB - CA - C ANGL. DEV. = 22.6 DEGREES REMARK 500 PHE B 279 CD1 - CG - CD2 ANGL. DEV. = 118.3 DEGREES REMARK 500 PHE B 279 CG - CD1 - CE1 ANGL. DEV. = -60.0 DEGREES REMARK 500 PHE B 279 CD1 - CE1 - CZ ANGL. DEV. = -59.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 0.02 -61.96 REMARK 500 SER A 64 -92.59 -32.19 REMARK 500 ILE A 71 -41.36 66.51 REMARK 500 LYS A 96 66.89 37.42 REMARK 500 LEU A 133 -96.88 -39.94 REMARK 500 PRO A 154 -70.56 -49.24 REMARK 500 ASN A 155 65.21 -105.20 REMARK 500 GLN A 236 59.41 -119.52 REMARK 500 VAL A 280 79.68 -114.30 REMARK 500 ASP A 341 30.06 -89.62 REMARK 500 THR B 16 143.58 177.05 REMARK 500 TRP B 35 146.30 -36.98 REMARK 500 ALA B 48 31.42 -74.72 REMARK 500 ASP B 49 -32.48 -164.11 REMARK 500 LEU B 66 -34.16 -136.88 REMARK 500 ALA B 77 69.07 -119.49 REMARK 500 LYS B 96 73.84 62.59 REMARK 500 LEU B 133 -73.44 -56.49 REMARK 500 PRO B 154 -56.55 -23.80 REMARK 500 ASN B 155 46.03 -169.29 REMARK 500 VAL B 280 75.26 -119.23 REMARK 500 ILE B 339 75.93 -118.88 REMARK 500 ASP B 341 45.60 -105.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FOK RELATED DB: PDB REMARK 900 STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA DBREF 1NLM A 3 356 UNP P17443 MURG_ECOLI 1 354 DBREF 1NLM B 3 356 UNP P17443 MURG_ECOLI 1 354 SEQADV 1NLM MET A 1 UNP P17443 CLONING ARTIFACT SEQADV 1NLM MET A 2 UNP P17443 CLONING ARTIFACT SEQADV 1NLM LEU A 357 UNP P17443 CLONING ARTIFACT SEQADV 1NLM GLU A 358 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS A 359 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS A 360 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS A 361 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS A 362 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS A 363 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS A 364 UNP P17443 CLONING ARTIFACT SEQADV 1NLM MET B 1 UNP P17443 CLONING ARTIFACT SEQADV 1NLM MET B 2 UNP P17443 CLONING ARTIFACT SEQADV 1NLM LEU B 357 UNP P17443 CLONING ARTIFACT SEQADV 1NLM GLU B 358 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS B 359 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS B 360 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS B 361 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS B 362 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS B 363 UNP P17443 CLONING ARTIFACT SEQADV 1NLM HIS B 364 UNP P17443 CLONING ARTIFACT SEQRES 1 A 364 MET MET SER GLY GLN GLY LYS ARG LEU MET VAL MET ALA SEQRES 2 A 364 GLY GLY THR GLY GLY HIS VAL PHE PRO GLY LEU ALA VAL SEQRES 3 A 364 ALA HIS HIS LEU MET ALA GLN GLY TRP GLN VAL ARG TRP SEQRES 4 A 364 LEU GLY THR ALA ASP ARG MET GLU ALA ASP LEU VAL PRO SEQRES 5 A 364 LYS HIS GLY ILE GLU ILE ASP PHE ILE ARG ILE SER GLY SEQRES 6 A 364 LEU ARG GLY LYS GLY ILE LYS ALA LEU ILE ALA ALA PRO SEQRES 7 A 364 LEU ARG ILE PHE ASN ALA TRP ARG GLN ALA ARG ALA ILE SEQRES 8 A 364 MET LYS ALA TYR LYS PRO ASP VAL VAL LEU GLY MET GLY SEQRES 9 A 364 GLY TYR VAL SER GLY PRO GLY GLY LEU ALA ALA TRP SER SEQRES 10 A 364 LEU GLY ILE PRO VAL VAL LEU HIS GLU GLN ASN GLY ILE SEQRES 11 A 364 ALA GLY LEU THR ASN LYS TRP LEU ALA LYS ILE ALA THR SEQRES 12 A 364 LYS VAL MET GLN ALA PHE PRO GLY ALA PHE PRO ASN ALA SEQRES 13 A 364 GLU VAL VAL GLY ASN PRO VAL ARG THR ASP VAL LEU ALA SEQRES 14 A 364 LEU PRO LEU PRO GLN GLN ARG LEU ALA GLY ARG GLU GLY SEQRES 15 A 364 PRO VAL ARG VAL LEU VAL VAL GLY GLY SER GLN GLY ALA SEQRES 16 A 364 ARG ILE LEU ASN GLN THR MET PRO GLN VAL ALA ALA LYS SEQRES 17 A 364 LEU GLY ASP SER VAL THR ILE TRP HIS GLN SER GLY LYS SEQRES 18 A 364 GLY SER GLN GLN SER VAL GLU GLN ALA TYR ALA GLU ALA SEQRES 19 A 364 GLY GLN PRO GLN HIS LYS VAL THR GLU PHE ILE ASP ASP SEQRES 20 A 364 MET ALA ALA ALA TYR ALA TRP ALA ASP VAL VAL VAL CYS SEQRES 21 A 364 ARG SER GLY ALA LEU THR VAL SER GLU ILE ALA ALA ALA SEQRES 22 A 364 GLY LEU PRO ALA LEU PHE VAL PRO PHE GLN HIS LYS ASP SEQRES 23 A 364 ARG GLN GLN TYR TRP ASN ALA LEU PRO LEU GLU LYS ALA SEQRES 24 A 364 GLY ALA ALA LYS ILE ILE GLU GLN PRO GLN LEU SER VAL SEQRES 25 A 364 ASP ALA VAL ALA ASN THR LEU ALA GLY TRP SER ARG GLU SEQRES 26 A 364 THR LEU LEU THR MET ALA GLU ARG ALA ARG ALA ALA SER SEQRES 27 A 364 ILE PRO ASP ALA THR GLU ARG VAL ALA ASN GLU VAL SER SEQRES 28 A 364 ARG VAL ALA ARG ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 364 MET MET SER GLY GLN GLY LYS ARG LEU MET VAL MET ALA SEQRES 2 B 364 GLY GLY THR GLY GLY HIS VAL PHE PRO GLY LEU ALA VAL SEQRES 3 B 364 ALA HIS HIS LEU MET ALA GLN GLY TRP GLN VAL ARG TRP SEQRES 4 B 364 LEU GLY THR ALA ASP ARG MET GLU ALA ASP LEU VAL PRO SEQRES 5 B 364 LYS HIS GLY ILE GLU ILE ASP PHE ILE ARG ILE SER GLY SEQRES 6 B 364 LEU ARG GLY LYS GLY ILE LYS ALA LEU ILE ALA ALA PRO SEQRES 7 B 364 LEU ARG ILE PHE ASN ALA TRP ARG GLN ALA ARG ALA ILE SEQRES 8 B 364 MET LYS ALA TYR LYS PRO ASP VAL VAL LEU GLY MET GLY SEQRES 9 B 364 GLY TYR VAL SER GLY PRO GLY GLY LEU ALA ALA TRP SER SEQRES 10 B 364 LEU GLY ILE PRO VAL VAL LEU HIS GLU GLN ASN GLY ILE SEQRES 11 B 364 ALA GLY LEU THR ASN LYS TRP LEU ALA LYS ILE ALA THR SEQRES 12 B 364 LYS VAL MET GLN ALA PHE PRO GLY ALA PHE PRO ASN ALA SEQRES 13 B 364 GLU VAL VAL GLY ASN PRO VAL ARG THR ASP VAL LEU ALA SEQRES 14 B 364 LEU PRO LEU PRO GLN GLN ARG LEU ALA GLY ARG GLU GLY SEQRES 15 B 364 PRO VAL ARG VAL LEU VAL VAL GLY GLY SER GLN GLY ALA SEQRES 16 B 364 ARG ILE LEU ASN GLN THR MET PRO GLN VAL ALA ALA LYS SEQRES 17 B 364 LEU GLY ASP SER VAL THR ILE TRP HIS GLN SER GLY LYS SEQRES 18 B 364 GLY SER GLN GLN SER VAL GLU GLN ALA TYR ALA GLU ALA SEQRES 19 B 364 GLY GLN PRO GLN HIS LYS VAL THR GLU PHE ILE ASP ASP SEQRES 20 B 364 MET ALA ALA ALA TYR ALA TRP ALA ASP VAL VAL VAL CYS SEQRES 21 B 364 ARG SER GLY ALA LEU THR VAL SER GLU ILE ALA ALA ALA SEQRES 22 B 364 GLY LEU PRO ALA LEU PHE VAL PRO PHE GLN HIS LYS ASP SEQRES 23 B 364 ARG GLN GLN TYR TRP ASN ALA LEU PRO LEU GLU LYS ALA SEQRES 24 B 364 GLY ALA ALA LYS ILE ILE GLU GLN PRO GLN LEU SER VAL SEQRES 25 B 364 ASP ALA VAL ALA ASN THR LEU ALA GLY TRP SER ARG GLU SEQRES 26 B 364 THR LEU LEU THR MET ALA GLU ARG ALA ARG ALA ALA SER SEQRES 27 B 364 ILE PRO ASP ALA THR GLU ARG VAL ALA ASN GLU VAL SER SEQRES 28 B 364 ARG VAL ALA ARG ALA LEU GLU HIS HIS HIS HIS HIS HIS HET UD1 A 401 39 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET UD1 B 402 39 HET GOL B 504 6 HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 UD1 2(C17 H27 N3 O17 P2) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 9 HOH *114(H2 O) HELIX 1 1 THR A 16 ALA A 32 1 17 HELIX 2 2 MET A 46 VAL A 51 1 6 HELIX 3 3 PRO A 52 GLY A 55 5 4 HELIX 4 4 ILE A 63 ARG A 67 5 5 HELIX 5 5 ILE A 71 ALA A 77 1 7 HELIX 6 6 PRO A 78 LYS A 96 1 19 HELIX 7 7 VAL A 107 LEU A 118 1 12 HELIX 8 8 GLY A 132 ALA A 139 1 8 HELIX 9 9 LYS A 140 ALA A 142 5 3 HELIX 10 10 ARG A 164 ALA A 169 1 6 HELIX 11 11 LEU A 172 LEU A 177 1 6 HELIX 12 12 ALA A 195 GLY A 210 1 16 HELIX 13 13 SER A 223 ALA A 234 1 12 HELIX 14 14 ASP A 247 ALA A 255 1 9 HELIX 15 15 GLY A 263 GLY A 274 1 12 HELIX 16 16 ARG A 287 ALA A 299 1 13 HELIX 17 17 GLU A 306 LEU A 310 5 5 HELIX 18 18 SER A 311 GLY A 321 1 11 HELIX 19 19 SER A 323 ALA A 337 1 15 HELIX 20 20 ASP A 341 ARG A 355 1 15 HELIX 21 21 THR B 16 ALA B 32 1 17 HELIX 22 22 MET B 46 HIS B 54 1 9 HELIX 23 23 ILE B 63 ARG B 67 5 5 HELIX 24 24 GLY B 70 ALA B 77 1 8 HELIX 25 25 PRO B 78 ARG B 80 5 3 HELIX 26 26 ILE B 81 LYS B 96 1 16 HELIX 27 27 VAL B 107 LEU B 118 1 12 HELIX 28 28 GLY B 132 ALA B 139 1 8 HELIX 29 29 ARG B 164 ALA B 169 1 6 HELIX 30 30 LEU B 172 ALA B 178 1 7 HELIX 31 31 ALA B 195 GLY B 210 1 16 HELIX 32 32 SER B 223 GLY B 235 1 13 HELIX 33 33 ASP B 247 ALA B 255 1 9 HELIX 34 34 GLY B 263 GLY B 274 1 12 HELIX 35 35 ARG B 287 ALA B 299 1 13 HELIX 36 36 GLU B 306 LEU B 310 5 5 HELIX 37 37 SER B 311 TRP B 322 1 12 HELIX 38 38 SER B 323 ALA B 337 1 15 HELIX 39 39 ASP B 341 ARG B 355 1 15 SHEET 1 A 7 GLU A 57 PHE A 60 0 SHEET 2 A 7 GLN A 36 GLY A 41 1 N TRP A 39 O ASP A 59 SHEET 3 A 7 ARG A 8 ALA A 13 1 N LEU A 9 O GLN A 36 SHEET 4 A 7 VAL A 99 GLY A 104 1 O LEU A 101 N MET A 12 SHEET 5 A 7 VAL A 122 GLU A 126 1 O VAL A 123 N GLY A 102 SHEET 6 A 7 LYS A 144 GLN A 147 1 O LYS A 144 N LEU A 124 SHEET 7 A 7 GLU A 157 VAL A 158 1 O GLU A 157 N GLN A 147 SHEET 1 B 6 LYS A 240 THR A 242 0 SHEET 2 B 6 VAL A 213 GLN A 218 1 N HIS A 217 O LYS A 240 SHEET 3 B 6 VAL A 184 VAL A 189 1 N VAL A 186 O THR A 214 SHEET 4 B 6 VAL A 257 CYS A 260 1 O VAL A 259 N LEU A 187 SHEET 5 B 6 ALA A 277 PHE A 279 1 O LEU A 278 N VAL A 258 SHEET 6 B 6 ALA A 302 ILE A 304 1 O LYS A 303 N PHE A 279 SHEET 1 C 7 GLU B 57 PHE B 60 0 SHEET 2 C 7 GLN B 36 GLY B 41 1 N TRP B 39 O ASP B 59 SHEET 3 C 7 ARG B 8 MET B 12 1 N LEU B 9 O GLN B 36 SHEET 4 C 7 VAL B 99 GLY B 102 1 O LEU B 101 N MET B 12 SHEET 5 C 7 VAL B 122 GLU B 126 1 O VAL B 123 N GLY B 102 SHEET 6 C 7 LYS B 144 GLN B 147 1 O MET B 146 N LEU B 124 SHEET 7 C 7 GLU B 157 VAL B 158 1 O GLU B 157 N GLN B 147 SHEET 1 D 6 LYS B 240 THR B 242 0 SHEET 2 D 6 VAL B 213 GLN B 218 1 N HIS B 217 O LYS B 240 SHEET 3 D 6 VAL B 184 VAL B 189 1 N VAL B 188 O GLN B 218 SHEET 4 D 6 VAL B 257 CYS B 260 1 O VAL B 259 N LEU B 187 SHEET 5 D 6 ALA B 277 PHE B 279 1 O LEU B 278 N VAL B 258 SHEET 6 D 6 ALA B 302 ILE B 304 1 O LYS B 303 N PHE B 279 SITE 1 AC1 22 GLY A 18 ASN A 128 ARG A 164 GLY A 191 SITE 2 AC1 22 SER A 192 GLN A 218 PHE A 244 ILE A 245 SITE 3 AC1 22 MET A 248 GLY A 263 ALA A 264 LEU A 265 SITE 4 AC1 22 THR A 266 GLU A 269 PHE A 282 GLN A 288 SITE 5 AC1 22 GLN A 289 ASN A 292 GOL A 502 HOH A 515 SITE 6 AC1 22 HOH A 526 HOH A 531 SITE 1 AC2 20 THR B 16 GLY B 17 GLY B 18 PHE B 21 SITE 2 AC2 20 ARG B 164 GLY B 191 SER B 192 GLN B 193 SITE 3 AC2 20 GLN B 218 PHE B 244 ILE B 245 MET B 248 SITE 4 AC2 20 GLY B 263 ALA B 264 LEU B 265 THR B 266 SITE 5 AC2 20 GLU B 269 HOH B 510 HOH B 516 HOH B 525 SITE 1 AC3 8 PHE A 149 GLY A 160 ASN A 161 SER A 268 SITE 2 AC3 8 ALA A 271 ALA A 337 HOH A 506 HOH A 510 SITE 1 AC4 3 PHE A 21 ARG A 164 UD1 A 401 SITE 1 AC5 6 GLY A 194 ALA A 195 ARG A 261 PHE A 282 SITE 2 AC5 6 HOH A 525 HOH A 534 SITE 1 AC6 1 SER B 117 CRYST1 66.703 83.651 146.245 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006838 0.00000