HEADER PROTEIN TRANSPORT 09-JAN-03 1NM7 TITLE SOLUTION STRUCTURE OF THE SCPEX13P SH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL MEMBRANE PROTEIN PAS20; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: PEX13P SH3 DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2 KEYWDS YEAST, MEMBRANE PROTEIN, PEX5P, PEX14P, PEX13P, IMPORT MACHINE, SH3 KEYWDS 2 DOMAIN, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.R.PIRES,X.HONG,C.BROCKMANN,R.VOLKMER-ENGERT,J.SCHNEIDER-MERGENER, AUTHOR 2 H.OSCHKINAT,R.ERDMANN REVDAT 4 29-MAY-24 1NM7 1 REMARK REVDAT 3 23-FEB-22 1NM7 1 REMARK SEQADV REVDAT 2 24-FEB-09 1NM7 1 VERSN REVDAT 1 04-MAR-03 1NM7 0 JRNL AUTH J.R.PIRES,X.HONG,C.BROCKMANN,R.VOLKMER-ENGERT, JRNL AUTH 2 J.SCHNEIDER-MERGENER,H.OSCHKINAT,R.ERDMANN JRNL TITL THE SCPEX13P SH3 DOMAIN EXPOSES TWO DISTINCT BINDING SITES JRNL TITL 2 FOR PEX5P AND PEX14P JRNL REF J.MOL.BIOL. V. 326 1427 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12595255 JRNL DOI 10.1016/S0022-2836(03)00039-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NM7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017999. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7MM [U-15N,13C] PEX13P SH3 REMARK 210 DOMAIN, 20MM PHOSPHATE BUFFER, REMARK 210 PH 6.0, 50MM NACL; 0.7MM [U-15N] REMARK 210 PEX13P SH3 DOMAIN, 20MM REMARK 210 PHOSPHATE BUFFER, PH 6.0, 50MM REMARK 210 NACL; 0.7MM UNLABELED PEX13P SH3 REMARK 210 DOMAIN, 20MM PHOSPHATE BUFFER, REMARK 210 PH 6.0, 50MM NACL; 0.7MM REMARK 210 UNLABELED PEX13P SH3 DOMAIN, REMARK 210 20MM PHOSPHATE BUFFER, PH 6.0, REMARK 210 50MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.106, ARIA 1.0, CNS 1.0 REMARK 210 METHOD USED : AMBIGUOUS DISTANCE RESTRAINTS REMARK 210 SIMULATED ANNEALING WITH TORSION REMARK 210 ANGLE DYNAMICS AS IMPLEMENTED IN REMARK 210 ARIA1.0 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA PRO A 319 HB3 GLU A 325 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 314 -70.14 -76.06 REMARK 500 1 ASP A 316 105.85 -54.04 REMARK 500 1 PRO A 319 106.29 -43.45 REMARK 500 1 PRO A 322 40.86 -75.04 REMARK 500 1 GLU A 323 -43.75 -130.70 REMARK 500 1 MET A 324 102.12 -164.57 REMARK 500 1 LYS A 330 105.74 -10.75 REMARK 500 1 ASP A 332 -172.40 -58.53 REMARK 500 1 LEU A 337 -59.97 -121.88 REMARK 500 1 LYS A 339 -120.68 -126.63 REMARK 500 1 ASP A 341 -63.49 104.86 REMARK 500 1 PRO A 342 -77.09 -92.15 REMARK 500 1 ARG A 345 -154.15 -80.76 REMARK 500 1 SER A 347 161.01 167.84 REMARK 500 1 TRP A 349 104.55 -167.56 REMARK 500 1 ILE A 362 118.25 -175.63 REMARK 500 2 ASP A 316 107.67 -47.84 REMARK 500 2 PRO A 319 103.03 -37.51 REMARK 500 2 PRO A 322 37.90 -74.82 REMARK 500 2 GLU A 323 -39.35 -130.29 REMARK 500 2 MET A 324 101.74 -165.88 REMARK 500 2 LYS A 330 114.92 -22.96 REMARK 500 2 ASP A 332 176.14 -56.49 REMARK 500 2 LEU A 337 -43.79 -131.49 REMARK 500 2 LYS A 339 -117.57 -133.73 REMARK 500 2 ASP A 341 -59.04 109.39 REMARK 500 2 PRO A 342 -71.98 -85.40 REMARK 500 2 LEU A 343 -71.06 -91.08 REMARK 500 2 ARG A 345 -128.58 -77.85 REMARK 500 2 ASP A 346 -141.38 -100.93 REMARK 500 2 SER A 347 150.45 65.95 REMARK 500 2 TRP A 349 113.37 -161.55 REMARK 500 2 ILE A 362 121.63 -178.92 REMARK 500 3 ASP A 316 109.90 -53.46 REMARK 500 3 PRO A 319 103.11 -38.02 REMARK 500 3 PRO A 322 46.28 -74.44 REMARK 500 3 GLU A 323 -44.79 -133.01 REMARK 500 3 LYS A 330 129.74 -24.02 REMARK 500 3 ASP A 332 172.08 -58.13 REMARK 500 3 LYS A 339 -119.66 -132.12 REMARK 500 3 ASP A 341 -60.81 108.45 REMARK 500 3 LEU A 343 -75.43 -94.34 REMARK 500 3 ARG A 345 -123.17 -75.49 REMARK 500 3 ASP A 346 -144.35 -105.54 REMARK 500 3 SER A 347 151.75 65.58 REMARK 500 4 PRO A 319 103.67 -38.70 REMARK 500 4 PRO A 322 38.61 -75.06 REMARK 500 4 MET A 324 101.06 -165.33 REMARK 500 4 LYS A 330 -96.95 28.69 REMARK 500 4 LYS A 339 -117.17 -129.75 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N5Z RELATED DB: PDB REMARK 900 1N5Z CONTAINS COMPLEX STRUCTURE OF PEX13P SH3 DOMAIN WITH A PEPTIDE REMARK 900 OF PEX14P DBREF 1NM7 A 310 370 UNP P80667 PEX13_YEAST 310 370 SEQADV 1NM7 GLY A 302 UNP P80667 EXPRESSION TAG SEQADV 1NM7 SER A 303 UNP P80667 EXPRESSION TAG SEQADV 1NM7 HIS A 304 UNP P80667 EXPRESSION TAG SEQADV 1NM7 HIS A 305 UNP P80667 EXPRESSION TAG SEQADV 1NM7 HIS A 306 UNP P80667 EXPRESSION TAG SEQADV 1NM7 HIS A 307 UNP P80667 EXPRESSION TAG SEQADV 1NM7 HIS A 308 UNP P80667 EXPRESSION TAG SEQADV 1NM7 HIS A 309 UNP P80667 EXPRESSION TAG SEQRES 1 A 69 GLY SER HIS HIS HIS HIS HIS HIS PHE ALA ARG ALA LEU SEQRES 2 A 69 TYR ASP PHE VAL PRO GLU ASN PRO GLU MET GLU VAL ALA SEQRES 3 A 69 LEU LYS LYS GLY ASP LEU MET ALA ILE LEU SER LYS LYS SEQRES 4 A 69 ASP PRO LEU GLY ARG ASP SER ASP TRP TRP LYS VAL ARG SEQRES 5 A 69 THR LYS ASN GLY ASN ILE GLY TYR ILE PRO TYR ASN TYR SEQRES 6 A 69 ILE GLU ILE ILE HELIX 1 1 PRO A 363 ASN A 365 5 3 SHEET 1 A 5 ASN A 358 ILE A 362 0 SHEET 2 A 5 TRP A 350 THR A 354 -1 N THR A 354 O ASN A 358 SHEET 3 A 5 LEU A 333 ILE A 336 -1 N ALA A 335 O ARG A 353 SHEET 4 A 5 ALA A 311 ALA A 313 -1 N ALA A 311 O MET A 334 SHEET 5 A 5 ILE A 367 ILE A 369 -1 O GLU A 368 N ARG A 312 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1