data_1NPA # _entry.id 1NPA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NPA pdb_00001npa 10.2210/pdb1npa/pdb RCSB RCSB018076 ? ? WWPDB D_1000018076 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-01-27 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NPA _pdbx_database_status.recvd_initial_deposition_date 2003-01-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smith III, A.B.' 1 'Hirschmann, R.' 2 'Pasternak, A.' 3 'Yao, W.' 4 'Sprengeler, P.A.' 5 'Holloway, M.K.' 6 'Kuo, L.C.' 7 'Chen, Z.' 8 'Darke, P.L.' 9 'Schleif, W.A.' 10 # _citation.id primary _citation.title ;An orally bioavailable pyrrolinone inhibitor of HIV-1 protease: computational analysis and X-ray crystal structure of the enzyme complex. ; _citation.journal_abbrev J.MED.CHEM. _citation.journal_volume 40 _citation.page_first 2440 _citation.page_last 2444 _citation.year 1997 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9258349 _citation.pdbx_database_id_DOI 10.1021/jm970195u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith III, A.B.' 1 ? primary 'Hirschmann, R.' 2 ? primary 'Pasternak, A.' 3 ? primary 'Yao, W.' 4 ? primary 'Sprengeler, P.A.' 5 ? primary 'Holloway, M.K.' 6 ? primary 'Kuo, L.C.' 7 ? primary 'Chen, Z.' 8 ? primary 'Darke, P.L.' 9 ? primary 'Schleif, W.A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'POL polyprotein' 10803.756 2 3.4.23.16 ? 'protease, residue 69-167' ? 2 non-polymer syn ;(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE ; 629.743 1 ? ? ? ? 3 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Retropepsin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE ; 3NH 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 GLN n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene POL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3NH non-polymer . ;(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE ; ? 'C36 H43 N3 O7' 629.743 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 201 PRO PRO B . n B 1 2 GLN 2 2 202 GLN GLN B . n B 1 3 ILE 3 3 203 ILE ILE B . n B 1 4 THR 4 4 204 THR THR B . n B 1 5 LEU 5 5 205 LEU LEU B . n B 1 6 TRP 6 6 206 TRP TRP B . n B 1 7 GLN 7 7 207 GLN GLN B . n B 1 8 ARG 8 8 208 ARG ARG B . n B 1 9 PRO 9 9 209 PRO PRO B . n B 1 10 LEU 10 10 210 LEU LEU B . n B 1 11 VAL 11 11 211 VAL VAL B . n B 1 12 THR 12 12 212 THR THR B . n B 1 13 ILE 13 13 213 ILE ILE B . n B 1 14 LYS 14 14 214 LYS LYS B . n B 1 15 ILE 15 15 215 ILE ILE B . n B 1 16 GLY 16 16 216 GLY GLY B . n B 1 17 GLY 17 17 217 GLY GLY B . n B 1 18 GLN 18 18 218 GLN GLN B . n B 1 19 LEU 19 19 219 LEU LEU B . n B 1 20 LYS 20 20 220 LYS LYS B . n B 1 21 GLU 21 21 221 GLU GLU B . n B 1 22 ALA 22 22 222 ALA ALA B . n B 1 23 LEU 23 23 223 LEU LEU B . n B 1 24 LEU 24 24 224 LEU LEU B . n B 1 25 ASP 25 25 225 ASP ASP B . n B 1 26 THR 26 26 226 THR THR B . n B 1 27 GLY 27 27 227 GLY GLY B . n B 1 28 ALA 28 28 228 ALA ALA B . n B 1 29 ASP 29 29 229 ASP ASP B . n B 1 30 ASP 30 30 230 ASP ASP B . n B 1 31 THR 31 31 231 THR THR B . n B 1 32 VAL 32 32 232 VAL VAL B . n B 1 33 LEU 33 33 233 LEU LEU B . n B 1 34 GLU 34 34 234 GLU GLU B . n B 1 35 GLU 35 35 235 GLU GLU B . n B 1 36 MET 36 36 236 MET MET B . n B 1 37 SER 37 37 237 SER SER B . n B 1 38 LEU 38 38 238 LEU LEU B . n B 1 39 PRO 39 39 239 PRO PRO B . n B 1 40 GLY 40 40 240 GLY GLY B . n B 1 41 ARG 41 41 241 ARG ARG B . n B 1 42 TRP 42 42 242 TRP TRP B . n B 1 43 LYS 43 43 243 LYS LYS B . n B 1 44 PRO 44 44 244 PRO PRO B . n B 1 45 LYS 45 45 245 LYS LYS B . n B 1 46 MET 46 46 246 MET MET B . n B 1 47 ILE 47 47 247 ILE ILE B . n B 1 48 GLY 48 48 248 GLY GLY B . n B 1 49 GLY 49 49 249 GLY GLY B . n B 1 50 ILE 50 50 250 ILE ILE B . n B 1 51 GLY 51 51 251 GLY GLY B . n B 1 52 GLY 52 52 252 GLY GLY B . n B 1 53 PHE 53 53 253 PHE PHE B . n B 1 54 ILE 54 54 254 ILE ILE B . n B 1 55 LYS 55 55 255 LYS LYS B . n B 1 56 VAL 56 56 256 VAL VAL B . n B 1 57 ARG 57 57 257 ARG ARG B . n B 1 58 GLN 58 58 258 GLN GLN B . n B 1 59 TYR 59 59 259 TYR TYR B . n B 1 60 ASP 60 60 260 ASP ASP B . n B 1 61 GLN 61 61 261 GLN GLN B . n B 1 62 ILE 62 62 262 ILE ILE B . n B 1 63 LEU 63 63 263 LEU LEU B . n B 1 64 ILE 64 64 264 ILE ILE B . n B 1 65 GLU 65 65 265 GLU GLU B . n B 1 66 ILE 66 66 266 ILE ILE B . n B 1 67 CYS 67 67 267 CYS CYS B . n B 1 68 GLY 68 68 268 GLY GLY B . n B 1 69 HIS 69 69 269 HIS HIS B . n B 1 70 LYS 70 70 270 LYS LYS B . n B 1 71 ALA 71 71 271 ALA ALA B . n B 1 72 ILE 72 72 272 ILE ILE B . n B 1 73 GLY 73 73 273 GLY GLY B . n B 1 74 THR 74 74 274 THR THR B . n B 1 75 VAL 75 75 275 VAL VAL B . n B 1 76 LEU 76 76 276 LEU LEU B . n B 1 77 VAL 77 77 277 VAL VAL B . n B 1 78 GLY 78 78 278 GLY GLY B . n B 1 79 PRO 79 79 279 PRO PRO B . n B 1 80 THR 80 80 280 THR THR B . n B 1 81 PRO 81 81 281 PRO PRO B . n B 1 82 VAL 82 82 282 VAL VAL B . n B 1 83 ASN 83 83 283 ASN ASN B . n B 1 84 ILE 84 84 284 ILE ILE B . n B 1 85 ILE 85 85 285 ILE ILE B . n B 1 86 GLY 86 86 286 GLY GLY B . n B 1 87 ARG 87 87 287 ARG ARG B . n B 1 88 ASN 88 88 288 ASN ASN B . n B 1 89 LEU 89 89 289 LEU LEU B . n B 1 90 LEU 90 90 290 LEU LEU B . n B 1 91 THR 91 91 291 THR THR B . n B 1 92 GLN 92 92 292 GLN GLN B . n B 1 93 ILE 93 93 293 ILE ILE B . n B 1 94 GLY 94 94 294 GLY GLY B . n B 1 95 CYS 95 95 295 CYS CYS B . n B 1 96 THR 96 96 296 THR THR B . n B 1 97 LEU 97 97 297 LEU LEU B . n B 1 98 ASN 98 98 298 ASN ASN B . n B 1 99 PHE 99 99 299 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3NH 1 100 1 3NH INH A . D 3 HOH 1 304 304 HOH WAT A . D 3 HOH 2 305 305 HOH WAT A . D 3 HOH 3 309 309 HOH WAT A . D 3 HOH 4 311 311 HOH WAT A . D 3 HOH 5 312 312 HOH WAT A . D 3 HOH 6 313 313 HOH WAT A . D 3 HOH 7 319 319 HOH WAT A . D 3 HOH 8 320 320 HOH WAT A . D 3 HOH 9 321 321 HOH WAT A . D 3 HOH 10 322 322 HOH WAT A . D 3 HOH 11 325 325 HOH WAT A . D 3 HOH 12 327 327 HOH WAT A . D 3 HOH 13 328 328 HOH WAT A . D 3 HOH 14 330 330 HOH WAT A . D 3 HOH 15 331 331 HOH WAT A . D 3 HOH 16 333 333 HOH WAT A . D 3 HOH 17 337 337 HOH WAT A . D 3 HOH 18 338 338 HOH WAT A . D 3 HOH 19 344 344 HOH WAT A . D 3 HOH 20 345 345 HOH WAT A . D 3 HOH 21 350 350 HOH WAT A . D 3 HOH 22 366 366 HOH WAT A . D 3 HOH 23 367 367 HOH WAT A . D 3 HOH 24 368 368 HOH WAT A . D 3 HOH 25 369 369 HOH WAT A . D 3 HOH 26 370 370 HOH WAT A . D 3 HOH 27 371 371 HOH WAT A . D 3 HOH 28 375 375 HOH WAT A . D 3 HOH 29 376 376 HOH WAT A . D 3 HOH 30 377 377 HOH WAT A . D 3 HOH 31 378 378 HOH WAT A . D 3 HOH 32 380 380 HOH WAT A . D 3 HOH 33 382 382 HOH WAT A . D 3 HOH 34 383 383 HOH WAT A . D 3 HOH 35 384 384 HOH WAT A . D 3 HOH 36 385 385 HOH WAT A . D 3 HOH 37 389 389 HOH WAT A . D 3 HOH 38 390 390 HOH WAT A . D 3 HOH 39 391 391 HOH WAT A . D 3 HOH 40 393 393 HOH WAT A . D 3 HOH 41 397 397 HOH WAT A . D 3 HOH 42 399 399 HOH WAT A . D 3 HOH 43 401 401 HOH WAT A . D 3 HOH 44 403 403 HOH WAT A . D 3 HOH 45 404 404 HOH WAT A . D 3 HOH 46 405 405 HOH WAT A . D 3 HOH 47 406 406 HOH WAT A . D 3 HOH 48 407 407 HOH WAT A . D 3 HOH 49 410 410 HOH WAT A . D 3 HOH 50 411 411 HOH WAT A . D 3 HOH 51 412 412 HOH WAT A . D 3 HOH 52 413 413 HOH WAT A . D 3 HOH 53 414 414 HOH WAT A . D 3 HOH 54 416 416 HOH WAT A . D 3 HOH 55 417 417 HOH WAT A . D 3 HOH 56 422 422 HOH WAT A . D 3 HOH 57 425 425 HOH WAT A . E 3 HOH 1 302 302 HOH WAT B . E 3 HOH 2 303 303 HOH WAT B . E 3 HOH 3 306 306 HOH WAT B . E 3 HOH 4 307 307 HOH WAT B . E 3 HOH 5 308 308 HOH WAT B . E 3 HOH 6 310 310 HOH WAT B . E 3 HOH 7 314 314 HOH WAT B . E 3 HOH 8 315 315 HOH WAT B . E 3 HOH 9 316 316 HOH WAT B . E 3 HOH 10 317 317 HOH WAT B . E 3 HOH 11 318 318 HOH WAT B . E 3 HOH 12 323 323 HOH WAT B . E 3 HOH 13 324 324 HOH WAT B . E 3 HOH 14 326 326 HOH WAT B . E 3 HOH 15 329 329 HOH WAT B . E 3 HOH 16 332 332 HOH WAT B . E 3 HOH 17 334 334 HOH WAT B . E 3 HOH 18 335 335 HOH WAT B . E 3 HOH 19 336 336 HOH WAT B . E 3 HOH 20 339 339 HOH WAT B . E 3 HOH 21 340 340 HOH WAT B . E 3 HOH 22 341 341 HOH WAT B . E 3 HOH 23 342 342 HOH WAT B . E 3 HOH 24 343 343 HOH WAT B . E 3 HOH 25 346 346 HOH WAT B . E 3 HOH 26 347 347 HOH WAT B . E 3 HOH 27 348 348 HOH WAT B . E 3 HOH 28 349 349 HOH WAT B . E 3 HOH 29 351 351 HOH WAT B . E 3 HOH 30 352 352 HOH WAT B . E 3 HOH 31 353 353 HOH WAT B . E 3 HOH 32 354 354 HOH WAT B . E 3 HOH 33 355 355 HOH WAT B . E 3 HOH 34 356 356 HOH WAT B . E 3 HOH 35 357 357 HOH WAT B . E 3 HOH 36 358 358 HOH WAT B . E 3 HOH 37 359 359 HOH WAT B . E 3 HOH 38 360 360 HOH WAT B . E 3 HOH 39 361 361 HOH WAT B . E 3 HOH 40 362 362 HOH WAT B . E 3 HOH 41 363 363 HOH WAT B . E 3 HOH 42 364 364 HOH WAT B . E 3 HOH 43 365 365 HOH WAT B . E 3 HOH 44 372 372 HOH WAT B . E 3 HOH 45 373 373 HOH WAT B . E 3 HOH 46 374 374 HOH WAT B . E 3 HOH 47 379 379 HOH WAT B . E 3 HOH 48 381 381 HOH WAT B . E 3 HOH 49 386 386 HOH WAT B . E 3 HOH 50 387 387 HOH WAT B . E 3 HOH 51 388 388 HOH WAT B . E 3 HOH 52 392 392 HOH WAT B . E 3 HOH 53 394 394 HOH WAT B . E 3 HOH 54 395 395 HOH WAT B . E 3 HOH 55 396 396 HOH WAT B . E 3 HOH 56 398 398 HOH WAT B . E 3 HOH 57 400 400 HOH WAT B . E 3 HOH 58 402 402 HOH WAT B . E 3 HOH 59 408 408 HOH WAT B . E 3 HOH 60 409 409 HOH WAT B . E 3 HOH 61 415 415 HOH WAT B . E 3 HOH 62 418 418 HOH WAT B . E 3 HOH 63 419 419 HOH WAT B . E 3 HOH 64 420 420 HOH WAT B . E 3 HOH 65 421 421 HOH WAT B . E 3 HOH 66 423 423 HOH WAT B . E 3 HOH 67 424 424 HOH WAT B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 1NPA _cell.length_a 58.26 _cell.length_b 87.46 _cell.length_c 46.41 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.entry_id 1NPA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? # _exptl.entry_id 1NPA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 55.02 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.pdbx_details '0.1 M NaAc, 0.5 M NaCl, 1mM DTT, 3mM NaN3, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1995-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1NPA _reflns.observed_criterion_sigma_F 3.0 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2 _reflns.d_resolution_low 15 _reflns.number_all 15398 _reflns.number_obs 12556 _reflns.percent_possible_obs 81.5 _reflns.pdbx_Rmerge_I_obs 0.623 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1NPA _refine.ls_d_res_high 2 _refine.ls_d_res_low 6 _refine.pdbx_ls_sigma_F 3 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 12556 _refine.ls_number_reflns_obs 11799 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.183 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1844 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 2014 _refine_hist.d_res_high 2 _refine_hist.d_res_low 6 # _database_PDB_matrix.entry_id 1NPA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NPA _struct.title 'crystal structure of HIV-1 protease-hup' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NPA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'protease, HIV, Aspartyl protease, hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1PV _struct_ref.pdbx_db_accession P03368 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 69 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NPA A 1 ? 99 ? P03368 69 ? 167 ? 1 99 2 1 1NPA B 1 ? 99 ? P03368 69 ? 167 ? 1 99 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4960 ? 1 MORE -32 ? 1 'SSA (A^2)' 9260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 9 ? C ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel C 3 4 ? anti-parallel C 4 5 ? parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel C 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? THR A 4 ? GLN A 2 THR A 4 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? THR B 4 ? GLN B 2 THR B 4 B 1 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 2 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 3 ASN A 83 ? ILE A 85 ? ASN A 83 ILE A 85 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 6 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 7 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 9 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 C 1 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 2 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 3 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 4 VAL B 32 ? LEU B 33 ? VAL B 32 LEU B 33 C 5 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 6 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 7 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 9 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 O LEU A 97 ? O LEU A 97 N ILE B 3 ? N ILE B 3 B 1 2 N ILE A 15 ? N ILE A 15 O GLN A 18 ? O GLN A 18 B 2 3 N LEU A 23 ? N LEU A 23 O ASN A 83 ? O ASN A 83 B 3 4 N ILE A 84 ? N ILE A 84 O VAL A 32 ? O VAL A 32 B 4 5 N LEU A 33 ? N LEU A 33 O LEU A 76 ? O LEU A 76 B 5 6 O VAL A 77 ? O VAL A 77 N ARG A 57 ? N ARG A 57 B 6 7 N GLN A 58 ? N GLN A 58 O LYS A 43 ? O LYS A 43 B 7 8 N GLY A 49 ? N GLY A 49 O GLY A 52 ? O GLY A 52 B 8 9 N GLU A 65 ? N GLU A 65 O LYS A 14 ? O LYS A 14 C 1 2 N ILE B 15 ? N ILE B 15 O GLN B 18 ? O GLN B 18 C 2 3 O LEU B 23 ? O LEU B 23 N ILE B 85 ? N ILE B 85 C 3 4 N ILE B 84 ? N ILE B 84 O VAL B 32 ? O VAL B 32 C 4 5 N LEU B 33 ? N LEU B 33 O LEU B 76 ? O LEU B 76 C 5 6 O VAL B 77 ? O VAL B 77 N ARG B 57 ? N ARG B 57 C 6 7 N GLN B 58 ? N GLN B 58 O LYS B 43 ? O LYS B 43 C 7 8 N GLY B 49 ? N GLY B 49 O GLY B 52 ? O GLY B 52 C 8 9 O GLU B 65 ? O GLU B 65 N LYS B 14 ? N LYS B 14 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 3NH _struct_site.pdbx_auth_seq_id 100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 21 _struct_site.details 'BINDING SITE FOR RESIDUE 3NH A 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 ASP A 25 ? ASP A 25 . ? 1_555 ? 2 AC1 21 GLY A 27 ? GLY A 27 . ? 1_555 ? 3 AC1 21 ALA A 28 ? ALA A 28 . ? 1_555 ? 4 AC1 21 ASP A 29 ? ASP A 29 . ? 1_555 ? 5 AC1 21 ASP A 30 ? ASP A 30 . ? 1_555 ? 6 AC1 21 VAL A 32 ? VAL A 32 . ? 1_555 ? 7 AC1 21 GLY A 48 ? GLY A 48 . ? 1_555 ? 8 AC1 21 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 21 ILE A 50 ? ILE A 50 . ? 1_555 ? 10 AC1 21 VAL A 82 ? VAL A 82 . ? 1_555 ? 11 AC1 21 HOH D . ? HOH A 304 . ? 1_555 ? 12 AC1 21 HOH D . ? HOH A 405 . ? 1_555 ? 13 AC1 21 ARG B 8 ? ARG B 8 . ? 1_555 ? 14 AC1 21 ASP B 25 ? ASP B 25 . ? 1_555 ? 15 AC1 21 GLY B 27 ? GLY B 27 . ? 1_555 ? 16 AC1 21 ASP B 29 ? ASP B 29 . ? 1_555 ? 17 AC1 21 ASP B 30 ? ASP B 30 . ? 1_555 ? 18 AC1 21 VAL B 32 ? VAL B 32 . ? 1_555 ? 19 AC1 21 GLY B 49 ? GLY B 49 . ? 1_555 ? 20 AC1 21 PRO B 81 ? PRO B 81 . ? 1_555 ? 21 AC1 21 ILE B 84 ? ILE B 84 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CA A ILE 62 ? ? O A HOH 367 ? ? 1.73 2 1 O A GLN 61 ? ? O A HOH 367 ? ? 2.10 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CB A GLN 61 ? ? 1_555 OE1 B GLN 2 ? ? 2_565 1.05 2 1 CD A GLN 61 ? ? 1_555 NE2 B GLN 2 ? ? 2_565 1.11 3 1 OE1 A GLN 61 ? ? 1_555 NE2 B GLN 2 ? ? 2_565 1.30 4 1 NZ A LYS 70 ? ? 1_555 CB B GLN 7 ? ? 2_565 1.44 5 1 CB A GLN 61 ? ? 1_555 CD B GLN 2 ? ? 2_565 1.46 6 1 CG A GLN 61 ? ? 1_555 NE2 B GLN 2 ? ? 2_565 1.50 7 1 NE2 A GLN 61 ? ? 1_555 ND2 A ASN 98 ? ? 2_565 1.65 8 1 NZ A LYS 70 ? ? 1_555 CG B GLN 7 ? ? 2_565 1.65 9 1 CA A GLN 61 ? ? 1_555 OE1 B GLN 2 ? ? 2_565 1.73 10 1 CG A GLN 61 ? ? 1_555 CD B GLN 2 ? ? 2_565 1.74 11 1 CB A GLN 61 ? ? 1_555 NE2 B GLN 2 ? ? 2_565 1.78 12 1 CD A GLN 61 ? ? 1_555 CD B GLN 2 ? ? 2_565 1.94 13 1 CG A GLN 61 ? ? 1_555 OE1 B GLN 2 ? ? 2_565 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A PRO 1 ? ? N A PRO 1 ? ? CD A PRO 1 ? ? 101.15 111.50 -10.35 1.40 N 2 1 CA B PRO 1 ? ? N B PRO 1 ? ? CD B PRO 1 ? ? 100.66 111.50 -10.84 1.40 N 3 1 NE B ARG 41 ? ? CZ B ARG 41 ? ? NH1 B ARG 41 ? ? 116.26 120.30 -4.04 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 35 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -39.29 _pdbx_validate_torsion.psi 117.07 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? A 3NH 100 ? PLANAR . 2 1 C35 ? A 3NH 100 ? PLANAR . 3 1 C44 ? A 3NH 100 ? PLANAR . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3NH O2 O N N 1 3NH C1 C N S 2 3NH O1 O N N 3 3NH C20 C N R 4 3NH C22 C N N 5 3NH C23 C Y N 6 3NH C24 C Y N 7 3NH C25 C Y N 8 3NH C26 C Y N 9 3NH C27 C Y N 10 3NH C28 C Y N 11 3NH C19 C N S 12 3NH C35 C N R 13 3NH C17 C N N 14 3NH O18 O N N 15 3NH C09 C N S 16 3NH N29 N N N 17 3NH C30 C N N 18 3NH C10 C N N 19 3NH C11 C Y N 20 3NH C12 C Y N 21 3NH C13 C Y N 22 3NH C14 C Y N 23 3NH C15 C Y N 24 3NH C16 C Y N 25 3NH C08 C N N 26 3NH C06 C N S 27 3NH O07 O N N 28 3NH C05 C N S 29 3NH NP4 N N N 30 3NH C02 C N N 31 3NH O03 O N N 32 3NH O01 O N N 33 3NH C44 C N S 34 3NH C45 C N N 35 3NH O46 O N N 36 3NH C47 C N N 37 3NH C48 C N N 38 3NH C36 C N N 39 3NH C37 C Y N 40 3NH C38 C Y N 41 3NH C39 C Y N 42 3NH C40 C Y N 43 3NH C41 C Y N 44 3NH C42 C Y N 45 3NH N1 N N N 46 3NH HO2 H N N 47 3NH H1 H N N 48 3NH H20 H N N 49 3NH H221 H N N 50 3NH H222 H N N 51 3NH H24 H N N 52 3NH H25 H N N 53 3NH H26 H N N 54 3NH H27 H N N 55 3NH H19 H N N 56 3NH H35 H N N 57 3NH H29 H N N 58 3NH H301 H N N 59 3NH H302 H N N 60 3NH H101 H N N 61 3NH H102 H N N 62 3NH H12 H N N 63 3NH H13 H N N 64 3NH H14 H N N 65 3NH H15 H N N 66 3NH H16 H N N 67 3NH H081 H N N 68 3NH H082 H N N 69 3NH H06 H N N 70 3NH H07 H N N 71 3NH H05 H N N 72 3NH HP4 H N N 73 3NH H44 H N N 74 3NH H451 H N N 75 3NH H452 H N N 76 3NH H471 H N N 77 3NH H472 H N N 78 3NH H481 H N N 79 3NH H482 H N N 80 3NH H361 H N N 81 3NH H362 H N N 82 3NH H38 H N N 83 3NH H39 H N N 84 3NH H40 H N N 85 3NH H41 H N N 86 3NH H42 H N N 87 3NH HN11 H N N 88 3NH HN12 H N N 89 ALA N N N N 90 ALA CA C N S 91 ALA C C N N 92 ALA O O N N 93 ALA CB C N N 94 ALA OXT O N N 95 ALA H H N N 96 ALA H2 H N N 97 ALA HA H N N 98 ALA HB1 H N N 99 ALA HB2 H N N 100 ALA HB3 H N N 101 ALA HXT H N N 102 ARG N N N N 103 ARG CA C N S 104 ARG C C N N 105 ARG O O N N 106 ARG CB C N N 107 ARG CG C N N 108 ARG CD C N N 109 ARG NE N N N 110 ARG CZ C N N 111 ARG NH1 N N N 112 ARG NH2 N N N 113 ARG OXT O N N 114 ARG H H N N 115 ARG H2 H N N 116 ARG HA H N N 117 ARG HB2 H N N 118 ARG HB3 H N N 119 ARG HG2 H N N 120 ARG HG3 H N N 121 ARG HD2 H N N 122 ARG HD3 H N N 123 ARG HE H N N 124 ARG HH11 H N N 125 ARG HH12 H N N 126 ARG HH21 H N N 127 ARG HH22 H N N 128 ARG HXT H N N 129 ASN N N N N 130 ASN CA C N S 131 ASN C C N N 132 ASN O O N N 133 ASN CB C N N 134 ASN CG C N N 135 ASN OD1 O N N 136 ASN ND2 N N N 137 ASN OXT O N N 138 ASN H H N N 139 ASN H2 H N N 140 ASN HA H N N 141 ASN HB2 H N N 142 ASN HB3 H N N 143 ASN HD21 H N N 144 ASN HD22 H N N 145 ASN HXT H N N 146 ASP N N N N 147 ASP CA C N S 148 ASP C C N N 149 ASP O O N N 150 ASP CB C N N 151 ASP CG C N N 152 ASP OD1 O N N 153 ASP OD2 O N N 154 ASP OXT O N N 155 ASP H H N N 156 ASP H2 H N N 157 ASP HA H N N 158 ASP HB2 H N N 159 ASP HB3 H N N 160 ASP HD2 H N N 161 ASP HXT H N N 162 CYS N N N N 163 CYS CA C N R 164 CYS C C N N 165 CYS O O N N 166 CYS CB C N N 167 CYS SG S N N 168 CYS OXT O N N 169 CYS H H N N 170 CYS H2 H N N 171 CYS HA H N N 172 CYS HB2 H N N 173 CYS HB3 H N N 174 CYS HG H N N 175 CYS HXT H N N 176 GLN N N N N 177 GLN CA C N S 178 GLN C C N N 179 GLN O O N N 180 GLN CB C N N 181 GLN CG C N N 182 GLN CD C N N 183 GLN OE1 O N N 184 GLN NE2 N N N 185 GLN OXT O N N 186 GLN H H N N 187 GLN H2 H N N 188 GLN HA H N N 189 GLN HB2 H N N 190 GLN HB3 H N N 191 GLN HG2 H N N 192 GLN HG3 H N N 193 GLN HE21 H N N 194 GLN HE22 H N N 195 GLN HXT H N N 196 GLU N N N N 197 GLU CA C N S 198 GLU C C N N 199 GLU O O N N 200 GLU CB C N N 201 GLU CG C N N 202 GLU CD C N N 203 GLU OE1 O N N 204 GLU OE2 O N N 205 GLU OXT O N N 206 GLU H H N N 207 GLU H2 H N N 208 GLU HA H N N 209 GLU HB2 H N N 210 GLU HB3 H N N 211 GLU HG2 H N N 212 GLU HG3 H N N 213 GLU HE2 H N N 214 GLU HXT H N N 215 GLY N N N N 216 GLY CA C N N 217 GLY C C N N 218 GLY O O N N 219 GLY OXT O N N 220 GLY H H N N 221 GLY H2 H N N 222 GLY HA2 H N N 223 GLY HA3 H N N 224 GLY HXT H N N 225 HIS N N N N 226 HIS CA C N S 227 HIS C C N N 228 HIS O O N N 229 HIS CB C N N 230 HIS CG C Y N 231 HIS ND1 N Y N 232 HIS CD2 C Y N 233 HIS CE1 C Y N 234 HIS NE2 N Y N 235 HIS OXT O N N 236 HIS H H N N 237 HIS H2 H N N 238 HIS HA H N N 239 HIS HB2 H N N 240 HIS HB3 H N N 241 HIS HD1 H N N 242 HIS HD2 H N N 243 HIS HE1 H N N 244 HIS HE2 H N N 245 HIS HXT H N N 246 HOH O O N N 247 HOH H1 H N N 248 HOH H2 H N N 249 ILE N N N N 250 ILE CA C N S 251 ILE C C N N 252 ILE O O N N 253 ILE CB C N S 254 ILE CG1 C N N 255 ILE CG2 C N N 256 ILE CD1 C N N 257 ILE OXT O N N 258 ILE H H N N 259 ILE H2 H N N 260 ILE HA H N N 261 ILE HB H N N 262 ILE HG12 H N N 263 ILE HG13 H N N 264 ILE HG21 H N N 265 ILE HG22 H N N 266 ILE HG23 H N N 267 ILE HD11 H N N 268 ILE HD12 H N N 269 ILE HD13 H N N 270 ILE HXT H N N 271 LEU N N N N 272 LEU CA C N S 273 LEU C C N N 274 LEU O O N N 275 LEU CB C N N 276 LEU CG C N N 277 LEU CD1 C N N 278 LEU CD2 C N N 279 LEU OXT O N N 280 LEU H H N N 281 LEU H2 H N N 282 LEU HA H N N 283 LEU HB2 H N N 284 LEU HB3 H N N 285 LEU HG H N N 286 LEU HD11 H N N 287 LEU HD12 H N N 288 LEU HD13 H N N 289 LEU HD21 H N N 290 LEU HD22 H N N 291 LEU HD23 H N N 292 LEU HXT H N N 293 LYS N N N N 294 LYS CA C N S 295 LYS C C N N 296 LYS O O N N 297 LYS CB C N N 298 LYS CG C N N 299 LYS CD C N N 300 LYS CE C N N 301 LYS NZ N N N 302 LYS OXT O N N 303 LYS H H N N 304 LYS H2 H N N 305 LYS HA H N N 306 LYS HB2 H N N 307 LYS HB3 H N N 308 LYS HG2 H N N 309 LYS HG3 H N N 310 LYS HD2 H N N 311 LYS HD3 H N N 312 LYS HE2 H N N 313 LYS HE3 H N N 314 LYS HZ1 H N N 315 LYS HZ2 H N N 316 LYS HZ3 H N N 317 LYS HXT H N N 318 MET N N N N 319 MET CA C N S 320 MET C C N N 321 MET O O N N 322 MET CB C N N 323 MET CG C N N 324 MET SD S N N 325 MET CE C N N 326 MET OXT O N N 327 MET H H N N 328 MET H2 H N N 329 MET HA H N N 330 MET HB2 H N N 331 MET HB3 H N N 332 MET HG2 H N N 333 MET HG3 H N N 334 MET HE1 H N N 335 MET HE2 H N N 336 MET HE3 H N N 337 MET HXT H N N 338 PHE N N N N 339 PHE CA C N S 340 PHE C C N N 341 PHE O O N N 342 PHE CB C N N 343 PHE CG C Y N 344 PHE CD1 C Y N 345 PHE CD2 C Y N 346 PHE CE1 C Y N 347 PHE CE2 C Y N 348 PHE CZ C Y N 349 PHE OXT O N N 350 PHE H H N N 351 PHE H2 H N N 352 PHE HA H N N 353 PHE HB2 H N N 354 PHE HB3 H N N 355 PHE HD1 H N N 356 PHE HD2 H N N 357 PHE HE1 H N N 358 PHE HE2 H N N 359 PHE HZ H N N 360 PHE HXT H N N 361 PRO N N N N 362 PRO CA C N S 363 PRO C C N N 364 PRO O O N N 365 PRO CB C N N 366 PRO CG C N N 367 PRO CD C N N 368 PRO OXT O N N 369 PRO H H N N 370 PRO HA H N N 371 PRO HB2 H N N 372 PRO HB3 H N N 373 PRO HG2 H N N 374 PRO HG3 H N N 375 PRO HD2 H N N 376 PRO HD3 H N N 377 PRO HXT H N N 378 SER N N N N 379 SER CA C N S 380 SER C C N N 381 SER O O N N 382 SER CB C N N 383 SER OG O N N 384 SER OXT O N N 385 SER H H N N 386 SER H2 H N N 387 SER HA H N N 388 SER HB2 H N N 389 SER HB3 H N N 390 SER HG H N N 391 SER HXT H N N 392 THR N N N N 393 THR CA C N S 394 THR C C N N 395 THR O O N N 396 THR CB C N R 397 THR OG1 O N N 398 THR CG2 C N N 399 THR OXT O N N 400 THR H H N N 401 THR H2 H N N 402 THR HA H N N 403 THR HB H N N 404 THR HG1 H N N 405 THR HG21 H N N 406 THR HG22 H N N 407 THR HG23 H N N 408 THR HXT H N N 409 TRP N N N N 410 TRP CA C N S 411 TRP C C N N 412 TRP O O N N 413 TRP CB C N N 414 TRP CG C Y N 415 TRP CD1 C Y N 416 TRP CD2 C Y N 417 TRP NE1 N Y N 418 TRP CE2 C Y N 419 TRP CE3 C Y N 420 TRP CZ2 C Y N 421 TRP CZ3 C Y N 422 TRP CH2 C Y N 423 TRP OXT O N N 424 TRP H H N N 425 TRP H2 H N N 426 TRP HA H N N 427 TRP HB2 H N N 428 TRP HB3 H N N 429 TRP HD1 H N N 430 TRP HE1 H N N 431 TRP HE3 H N N 432 TRP HZ2 H N N 433 TRP HZ3 H N N 434 TRP HH2 H N N 435 TRP HXT H N N 436 TYR N N N N 437 TYR CA C N S 438 TYR C C N N 439 TYR O O N N 440 TYR CB C N N 441 TYR CG C Y N 442 TYR CD1 C Y N 443 TYR CD2 C Y N 444 TYR CE1 C Y N 445 TYR CE2 C Y N 446 TYR CZ C Y N 447 TYR OH O N N 448 TYR OXT O N N 449 TYR H H N N 450 TYR H2 H N N 451 TYR HA H N N 452 TYR HB2 H N N 453 TYR HB3 H N N 454 TYR HD1 H N N 455 TYR HD2 H N N 456 TYR HE1 H N N 457 TYR HE2 H N N 458 TYR HH H N N 459 TYR HXT H N N 460 VAL N N N N 461 VAL CA C N S 462 VAL C C N N 463 VAL O O N N 464 VAL CB C N N 465 VAL CG1 C N N 466 VAL CG2 C N N 467 VAL OXT O N N 468 VAL H H N N 469 VAL H2 H N N 470 VAL HA H N N 471 VAL HB H N N 472 VAL HG11 H N N 473 VAL HG12 H N N 474 VAL HG13 H N N 475 VAL HG21 H N N 476 VAL HG22 H N N 477 VAL HG23 H N N 478 VAL HXT H N N 479 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3NH O2 C1 sing N N 1 3NH O2 HO2 sing N N 2 3NH C1 O1 sing N N 3 3NH C1 N1 sing N N 4 3NH C1 H1 sing N N 5 3NH O1 C20 sing N N 6 3NH C20 C22 sing N N 7 3NH C20 C19 sing N N 8 3NH C20 H20 sing N N 9 3NH C22 C23 sing N N 10 3NH C22 H221 sing N N 11 3NH C22 H222 sing N N 12 3NH C23 C24 doub Y N 13 3NH C23 C28 sing Y N 14 3NH C24 C25 sing Y N 15 3NH C24 H24 sing N N 16 3NH C25 C26 doub Y N 17 3NH C25 H25 sing N N 18 3NH C26 C27 sing Y N 19 3NH C26 H26 sing N N 20 3NH C27 C28 doub Y N 21 3NH C27 H27 sing N N 22 3NH C28 C19 sing N N 23 3NH C19 C35 sing N N 24 3NH C19 H19 sing N N 25 3NH C35 C17 sing N N 26 3NH C35 C30 sing N N 27 3NH C35 H35 sing N N 28 3NH C17 O18 doub N N 29 3NH C17 C09 sing N N 30 3NH C09 N29 sing N N 31 3NH C09 C10 sing N N 32 3NH C09 C08 sing N N 33 3NH N29 C30 sing N N 34 3NH N29 H29 sing N N 35 3NH C30 H301 sing N N 36 3NH C30 H302 sing N N 37 3NH C10 C11 sing N N 38 3NH C10 H101 sing N N 39 3NH C10 H102 sing N N 40 3NH C11 C12 doub Y N 41 3NH C11 C16 sing Y N 42 3NH C12 C13 sing Y N 43 3NH C12 H12 sing N N 44 3NH C13 C14 doub Y N 45 3NH C13 H13 sing N N 46 3NH C14 C15 sing Y N 47 3NH C14 H14 sing N N 48 3NH C15 C16 doub Y N 49 3NH C15 H15 sing N N 50 3NH C16 H16 sing N N 51 3NH C08 C06 sing N N 52 3NH C08 H081 sing N N 53 3NH C08 H082 sing N N 54 3NH C06 O07 sing N N 55 3NH C06 C05 sing N N 56 3NH C06 H06 sing N N 57 3NH O07 H07 sing N N 58 3NH C05 NP4 sing N N 59 3NH C05 C36 sing N N 60 3NH C05 H05 sing N N 61 3NH NP4 C02 sing N N 62 3NH NP4 HP4 sing N N 63 3NH C02 O03 doub N N 64 3NH C02 O01 sing N N 65 3NH O01 C44 sing N N 66 3NH C44 C45 sing N N 67 3NH C44 C48 sing N N 68 3NH C44 H44 sing N N 69 3NH C45 O46 sing N N 70 3NH C45 H451 sing N N 71 3NH C45 H452 sing N N 72 3NH O46 C47 sing N N 73 3NH C47 C48 sing N N 74 3NH C47 H471 sing N N 75 3NH C47 H472 sing N N 76 3NH C48 H481 sing N N 77 3NH C48 H482 sing N N 78 3NH C36 C37 sing N N 79 3NH C36 H361 sing N N 80 3NH C36 H362 sing N N 81 3NH C37 C38 doub Y N 82 3NH C37 C42 sing Y N 83 3NH C38 C39 sing Y N 84 3NH C38 H38 sing N N 85 3NH C39 C40 doub Y N 86 3NH C39 H39 sing N N 87 3NH C40 C41 sing Y N 88 3NH C40 H40 sing N N 89 3NH C41 C42 doub Y N 90 3NH C41 H41 sing N N 91 3NH C42 H42 sing N N 92 3NH N1 HN11 sing N N 93 3NH N1 HN12 sing N N 94 ALA N CA sing N N 95 ALA N H sing N N 96 ALA N H2 sing N N 97 ALA CA C sing N N 98 ALA CA CB sing N N 99 ALA CA HA sing N N 100 ALA C O doub N N 101 ALA C OXT sing N N 102 ALA CB HB1 sing N N 103 ALA CB HB2 sing N N 104 ALA CB HB3 sing N N 105 ALA OXT HXT sing N N 106 ARG N CA sing N N 107 ARG N H sing N N 108 ARG N H2 sing N N 109 ARG CA C sing N N 110 ARG CA CB sing N N 111 ARG CA HA sing N N 112 ARG C O doub N N 113 ARG C OXT sing N N 114 ARG CB CG sing N N 115 ARG CB HB2 sing N N 116 ARG CB HB3 sing N N 117 ARG CG CD sing N N 118 ARG CG HG2 sing N N 119 ARG CG HG3 sing N N 120 ARG CD NE sing N N 121 ARG CD HD2 sing N N 122 ARG CD HD3 sing N N 123 ARG NE CZ sing N N 124 ARG NE HE sing N N 125 ARG CZ NH1 sing N N 126 ARG CZ NH2 doub N N 127 ARG NH1 HH11 sing N N 128 ARG NH1 HH12 sing N N 129 ARG NH2 HH21 sing N N 130 ARG NH2 HH22 sing N N 131 ARG OXT HXT sing N N 132 ASN N CA sing N N 133 ASN N H sing N N 134 ASN N H2 sing N N 135 ASN CA C sing N N 136 ASN CA CB sing N N 137 ASN CA HA sing N N 138 ASN C O doub N N 139 ASN C OXT sing N N 140 ASN CB CG sing N N 141 ASN CB HB2 sing N N 142 ASN CB HB3 sing N N 143 ASN CG OD1 doub N N 144 ASN CG ND2 sing N N 145 ASN ND2 HD21 sing N N 146 ASN ND2 HD22 sing N N 147 ASN OXT HXT sing N N 148 ASP N CA sing N N 149 ASP N H sing N N 150 ASP N H2 sing N N 151 ASP CA C sing N N 152 ASP CA CB sing N N 153 ASP CA HA sing N N 154 ASP C O doub N N 155 ASP C OXT sing N N 156 ASP CB CG sing N N 157 ASP CB HB2 sing N N 158 ASP CB HB3 sing N N 159 ASP CG OD1 doub N N 160 ASP CG OD2 sing N N 161 ASP OD2 HD2 sing N N 162 ASP OXT HXT sing N N 163 CYS N CA sing N N 164 CYS N H sing N N 165 CYS N H2 sing N N 166 CYS CA C sing N N 167 CYS CA CB sing N N 168 CYS CA HA sing N N 169 CYS C O doub N N 170 CYS C OXT sing N N 171 CYS CB SG sing N N 172 CYS CB HB2 sing N N 173 CYS CB HB3 sing N N 174 CYS SG HG sing N N 175 CYS OXT HXT sing N N 176 GLN N CA sing N N 177 GLN N H sing N N 178 GLN N H2 sing N N 179 GLN CA C sing N N 180 GLN CA CB sing N N 181 GLN CA HA sing N N 182 GLN C O doub N N 183 GLN C OXT sing N N 184 GLN CB CG sing N N 185 GLN CB HB2 sing N N 186 GLN CB HB3 sing N N 187 GLN CG CD sing N N 188 GLN CG HG2 sing N N 189 GLN CG HG3 sing N N 190 GLN CD OE1 doub N N 191 GLN CD NE2 sing N N 192 GLN NE2 HE21 sing N N 193 GLN NE2 HE22 sing N N 194 GLN OXT HXT sing N N 195 GLU N CA sing N N 196 GLU N H sing N N 197 GLU N H2 sing N N 198 GLU CA C sing N N 199 GLU CA CB sing N N 200 GLU CA HA sing N N 201 GLU C O doub N N 202 GLU C OXT sing N N 203 GLU CB CG sing N N 204 GLU CB HB2 sing N N 205 GLU CB HB3 sing N N 206 GLU CG CD sing N N 207 GLU CG HG2 sing N N 208 GLU CG HG3 sing N N 209 GLU CD OE1 doub N N 210 GLU CD OE2 sing N N 211 GLU OE2 HE2 sing N N 212 GLU OXT HXT sing N N 213 GLY N CA sing N N 214 GLY N H sing N N 215 GLY N H2 sing N N 216 GLY CA C sing N N 217 GLY CA HA2 sing N N 218 GLY CA HA3 sing N N 219 GLY C O doub N N 220 GLY C OXT sing N N 221 GLY OXT HXT sing N N 222 HIS N CA sing N N 223 HIS N H sing N N 224 HIS N H2 sing N N 225 HIS CA C sing N N 226 HIS CA CB sing N N 227 HIS CA HA sing N N 228 HIS C O doub N N 229 HIS C OXT sing N N 230 HIS CB CG sing N N 231 HIS CB HB2 sing N N 232 HIS CB HB3 sing N N 233 HIS CG ND1 sing Y N 234 HIS CG CD2 doub Y N 235 HIS ND1 CE1 doub Y N 236 HIS ND1 HD1 sing N N 237 HIS CD2 NE2 sing Y N 238 HIS CD2 HD2 sing N N 239 HIS CE1 NE2 sing Y N 240 HIS CE1 HE1 sing N N 241 HIS NE2 HE2 sing N N 242 HIS OXT HXT sing N N 243 HOH O H1 sing N N 244 HOH O H2 sing N N 245 ILE N CA sing N N 246 ILE N H sing N N 247 ILE N H2 sing N N 248 ILE CA C sing N N 249 ILE CA CB sing N N 250 ILE CA HA sing N N 251 ILE C O doub N N 252 ILE C OXT sing N N 253 ILE CB CG1 sing N N 254 ILE CB CG2 sing N N 255 ILE CB HB sing N N 256 ILE CG1 CD1 sing N N 257 ILE CG1 HG12 sing N N 258 ILE CG1 HG13 sing N N 259 ILE CG2 HG21 sing N N 260 ILE CG2 HG22 sing N N 261 ILE CG2 HG23 sing N N 262 ILE CD1 HD11 sing N N 263 ILE CD1 HD12 sing N N 264 ILE CD1 HD13 sing N N 265 ILE OXT HXT sing N N 266 LEU N CA sing N N 267 LEU N H sing N N 268 LEU N H2 sing N N 269 LEU CA C sing N N 270 LEU CA CB sing N N 271 LEU CA HA sing N N 272 LEU C O doub N N 273 LEU C OXT sing N N 274 LEU CB CG sing N N 275 LEU CB HB2 sing N N 276 LEU CB HB3 sing N N 277 LEU CG CD1 sing N N 278 LEU CG CD2 sing N N 279 LEU CG HG sing N N 280 LEU CD1 HD11 sing N N 281 LEU CD1 HD12 sing N N 282 LEU CD1 HD13 sing N N 283 LEU CD2 HD21 sing N N 284 LEU CD2 HD22 sing N N 285 LEU CD2 HD23 sing N N 286 LEU OXT HXT sing N N 287 LYS N CA sing N N 288 LYS N H sing N N 289 LYS N H2 sing N N 290 LYS CA C sing N N 291 LYS CA CB sing N N 292 LYS CA HA sing N N 293 LYS C O doub N N 294 LYS C OXT sing N N 295 LYS CB CG sing N N 296 LYS CB HB2 sing N N 297 LYS CB HB3 sing N N 298 LYS CG CD sing N N 299 LYS CG HG2 sing N N 300 LYS CG HG3 sing N N 301 LYS CD CE sing N N 302 LYS CD HD2 sing N N 303 LYS CD HD3 sing N N 304 LYS CE NZ sing N N 305 LYS CE HE2 sing N N 306 LYS CE HE3 sing N N 307 LYS NZ HZ1 sing N N 308 LYS NZ HZ2 sing N N 309 LYS NZ HZ3 sing N N 310 LYS OXT HXT sing N N 311 MET N CA sing N N 312 MET N H sing N N 313 MET N H2 sing N N 314 MET CA C sing N N 315 MET CA CB sing N N 316 MET CA HA sing N N 317 MET C O doub N N 318 MET C OXT sing N N 319 MET CB CG sing N N 320 MET CB HB2 sing N N 321 MET CB HB3 sing N N 322 MET CG SD sing N N 323 MET CG HG2 sing N N 324 MET CG HG3 sing N N 325 MET SD CE sing N N 326 MET CE HE1 sing N N 327 MET CE HE2 sing N N 328 MET CE HE3 sing N N 329 MET OXT HXT sing N N 330 PHE N CA sing N N 331 PHE N H sing N N 332 PHE N H2 sing N N 333 PHE CA C sing N N 334 PHE CA CB sing N N 335 PHE CA HA sing N N 336 PHE C O doub N N 337 PHE C OXT sing N N 338 PHE CB CG sing N N 339 PHE CB HB2 sing N N 340 PHE CB HB3 sing N N 341 PHE CG CD1 doub Y N 342 PHE CG CD2 sing Y N 343 PHE CD1 CE1 sing Y N 344 PHE CD1 HD1 sing N N 345 PHE CD2 CE2 doub Y N 346 PHE CD2 HD2 sing N N 347 PHE CE1 CZ doub Y N 348 PHE CE1 HE1 sing N N 349 PHE CE2 CZ sing Y N 350 PHE CE2 HE2 sing N N 351 PHE CZ HZ sing N N 352 PHE OXT HXT sing N N 353 PRO N CA sing N N 354 PRO N CD sing N N 355 PRO N H sing N N 356 PRO CA C sing N N 357 PRO CA CB sing N N 358 PRO CA HA sing N N 359 PRO C O doub N N 360 PRO C OXT sing N N 361 PRO CB CG sing N N 362 PRO CB HB2 sing N N 363 PRO CB HB3 sing N N 364 PRO CG CD sing N N 365 PRO CG HG2 sing N N 366 PRO CG HG3 sing N N 367 PRO CD HD2 sing N N 368 PRO CD HD3 sing N N 369 PRO OXT HXT sing N N 370 SER N CA sing N N 371 SER N H sing N N 372 SER N H2 sing N N 373 SER CA C sing N N 374 SER CA CB sing N N 375 SER CA HA sing N N 376 SER C O doub N N 377 SER C OXT sing N N 378 SER CB OG sing N N 379 SER CB HB2 sing N N 380 SER CB HB3 sing N N 381 SER OG HG sing N N 382 SER OXT HXT sing N N 383 THR N CA sing N N 384 THR N H sing N N 385 THR N H2 sing N N 386 THR CA C sing N N 387 THR CA CB sing N N 388 THR CA HA sing N N 389 THR C O doub N N 390 THR C OXT sing N N 391 THR CB OG1 sing N N 392 THR CB CG2 sing N N 393 THR CB HB sing N N 394 THR OG1 HG1 sing N N 395 THR CG2 HG21 sing N N 396 THR CG2 HG22 sing N N 397 THR CG2 HG23 sing N N 398 THR OXT HXT sing N N 399 TRP N CA sing N N 400 TRP N H sing N N 401 TRP N H2 sing N N 402 TRP CA C sing N N 403 TRP CA CB sing N N 404 TRP CA HA sing N N 405 TRP C O doub N N 406 TRP C OXT sing N N 407 TRP CB CG sing N N 408 TRP CB HB2 sing N N 409 TRP CB HB3 sing N N 410 TRP CG CD1 doub Y N 411 TRP CG CD2 sing Y N 412 TRP CD1 NE1 sing Y N 413 TRP CD1 HD1 sing N N 414 TRP CD2 CE2 doub Y N 415 TRP CD2 CE3 sing Y N 416 TRP NE1 CE2 sing Y N 417 TRP NE1 HE1 sing N N 418 TRP CE2 CZ2 sing Y N 419 TRP CE3 CZ3 doub Y N 420 TRP CE3 HE3 sing N N 421 TRP CZ2 CH2 doub Y N 422 TRP CZ2 HZ2 sing N N 423 TRP CZ3 CH2 sing Y N 424 TRP CZ3 HZ3 sing N N 425 TRP CH2 HH2 sing N N 426 TRP OXT HXT sing N N 427 TYR N CA sing N N 428 TYR N H sing N N 429 TYR N H2 sing N N 430 TYR CA C sing N N 431 TYR CA CB sing N N 432 TYR CA HA sing N N 433 TYR C O doub N N 434 TYR C OXT sing N N 435 TYR CB CG sing N N 436 TYR CB HB2 sing N N 437 TYR CB HB3 sing N N 438 TYR CG CD1 doub Y N 439 TYR CG CD2 sing Y N 440 TYR CD1 CE1 sing Y N 441 TYR CD1 HD1 sing N N 442 TYR CD2 CE2 doub Y N 443 TYR CD2 HD2 sing N N 444 TYR CE1 CZ doub Y N 445 TYR CE1 HE1 sing N N 446 TYR CE2 CZ sing Y N 447 TYR CE2 HE2 sing N N 448 TYR CZ OH sing N N 449 TYR OH HH sing N N 450 TYR OXT HXT sing N N 451 VAL N CA sing N N 452 VAL N H sing N N 453 VAL N H2 sing N N 454 VAL CA C sing N N 455 VAL CA CB sing N N 456 VAL CA HA sing N N 457 VAL C O doub N N 458 VAL C OXT sing N N 459 VAL CB CG1 sing N N 460 VAL CB CG2 sing N N 461 VAL CB HB sing N N 462 VAL CG1 HG11 sing N N 463 VAL CG1 HG12 sing N N 464 VAL CG1 HG13 sing N N 465 VAL CG2 HG21 sing N N 466 VAL CG2 HG22 sing N N 467 VAL CG2 HG23 sing N N 468 VAL OXT HXT sing N N 469 # _atom_sites.entry_id 1NPA _atom_sites.fract_transf_matrix[1][1] 0.017164 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011434 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021547 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_