HEADER TRANSCRIPTION 18-JAN-03 1NPP TITLE CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS NUSG IN P2(1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ANTITERMINATION PROTEIN NUSG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: NUSG OR AQ_1931; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKM702 KEYWDS RNAP TRANSCRIPTION FACTOR, NUSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KNOWLTON,M.BUBUNENKO,M.ANDRYKOVITCH,W.GUO,K.M.ROUTZAHN,D.S.WAUGH, AUTHOR 2 D.L.COURT,X.JI REVDAT 4 30-AUG-23 1NPP 1 AUTHOR JRNL REMARK REVDAT 3 24-FEB-09 1NPP 1 VERSN REVDAT 2 18-MAR-03 1NPP 1 JRNL REVDAT 1 11-MAR-03 1NPP 0 JRNL AUTH J.R.KNOWLTON,M.BUBUNENKO,M.ANDRYKOVITCH,W.GUO,K.M.ROUTZAHN, JRNL AUTH 2 D.S.WAUGH,D.L.COURT,X.JI JRNL TITL A SPRING-LOADED STATE OF NUSG IN ITS FUNCTIONAL CYCLE IS JRNL TITL 2 SUGGESTED BY X-RAY CRYSTALLOGRAPHY AND SUPPORTED BY JRNL TITL 3 SITE-DIRECTED MUTANTS JRNL REF BIOCHEMISTRY V. 42 2275 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12600194 JRNL DOI 10.1021/BI0272508 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.STEINER,J.T.KAISER,S.MARINKOVIC,R.HUBER,M.C.WAHL REMARK 1 TITL CRYSTAL STRUCTURES OF TRANSCRIPTION FACTOR NUSG IN LIGHT OF REMARK 1 TITL 2 ITS NUCLEIC ACID-AND PROTEIN-BINDING ACTIVITIES REMARK 1 REF EMBO J. V. 21 4641 2002 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/CDF455 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 76.1 REMARK 3 NUMBER OF REFLECTIONS : 55951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2877 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3930 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 204 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 858 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.62000 REMARK 3 B22 (A**2) : 17.45000 REMARK 3 B33 (A**2) : -11.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 55.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-00; 09-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X9B; X9B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00188; 0.97884, 0.97925, REMARK 200 0.96364 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL; DOUBLE FLAT REMARK 200 CRYSTAL REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 36.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 HEPES GLYCEROL ISOPROPANOL, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.93000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 VAL B 6 REMARK 465 GLN B 7 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 GLN C 4 REMARK 465 GLN C 5 REMARK 465 VAL C 6 REMARK 465 GLN C 7 REMARK 465 GLU C 8 REMARK 465 LEU C 9 REMARK 465 ILE C 248 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLU D 3 REMARK 465 GLN D 4 REMARK 465 GLN D 5 REMARK 465 GLU D 246 REMARK 465 LYS D 247 REMARK 465 ILE D 248 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 8 CG CD OE1 OE2 REMARK 480 LYS B 69 CG CD CE NZ REMARK 480 LYS C 69 CG CD CE NZ REMARK 480 LYS C 197 CG CD CE NZ REMARK 480 VAL D 188 CG1 CG2 REMARK 480 LYS D 189 CG CD CE NZ REMARK 480 SER D 191 OG REMARK 480 LYS D 192 CG CD CE NZ REMARK 480 VAL D 193 CG1 CG2 REMARK 480 GLU D 194 CG CD OE1 OE2 REMARK 480 GLU D 239 CG CD OE1 OE2 REMARK 480 ASP D 243 CG OD1 OD2 REMARK 480 GLN D 244 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 169 CA - N - CD ANGL. DEV. = -19.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 111 9.33 -152.79 REMARK 500 ASN A 132 69.10 69.19 REMARK 500 HIS A 158 5.74 82.12 REMARK 500 ARG A 161 165.41 179.39 REMARK 500 PRO A 190 140.87 -35.60 REMARK 500 GLU A 205 138.38 -170.45 REMARK 500 ASN A 210 -17.09 89.05 REMARK 500 GLN B 59 117.14 -2.20 REMARK 500 SER B 111 -1.33 -147.44 REMARK 500 HIS B 158 -0.21 77.73 REMARK 500 PHE B 160 -73.79 -87.42 REMARK 500 VAL B 188 75.41 -15.95 REMARK 500 LYS B 189 101.42 -59.99 REMARK 500 SER B 191 -156.04 -75.09 REMARK 500 VAL B 193 8.47 53.09 REMARK 500 ASN B 210 -19.65 66.38 REMARK 500 GLU B 217 173.64 178.58 REMARK 500 HIS B 219 -177.61 78.69 REMARK 500 GLU B 221 93.55 22.63 REMARK 500 LYS B 222 9.29 -166.07 REMARK 500 ARG B 223 43.17 27.18 REMARK 500 PHE C 135 55.07 -110.15 REMARK 500 HIS C 158 -11.14 83.11 REMARK 500 ARG C 161 169.56 171.85 REMARK 500 VAL C 188 136.91 -29.87 REMARK 500 PRO C 190 155.87 -43.27 REMARK 500 LYS C 192 -139.81 36.08 REMARK 500 GLU C 194 35.32 -81.21 REMARK 500 PHE C 195 131.54 166.97 REMARK 500 ASN C 210 -23.15 79.24 REMARK 500 GLU C 221 -36.50 -157.65 REMARK 500 LEU C 225 143.70 -176.45 REMARK 500 ASP C 241 56.54 -93.87 REMARK 500 SER D 111 1.61 -153.53 REMARK 500 PHE D 160 -76.85 -88.69 REMARK 500 LYS D 189 24.55 -142.04 REMARK 500 SER D 191 132.78 -25.15 REMARK 500 LYS D 192 -3.98 -57.36 REMARK 500 GLU D 194 -13.90 164.33 REMARK 500 PHE D 195 -105.81 -51.88 REMARK 500 GLU D 196 171.31 169.20 REMARK 500 LYS D 197 111.77 174.93 REMARK 500 ILE D 204 -26.93 -163.56 REMARK 500 ASN D 210 -12.24 81.82 REMARK 500 VAL D 218 -91.51 -133.98 REMARK 500 HIS D 219 87.12 66.25 REMARK 500 PRO D 220 -143.83 -53.30 REMARK 500 GLU D 221 -129.74 62.06 REMARK 500 LYS D 224 -127.78 -55.38 REMARK 500 ASP D 243 85.48 151.50 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA D 859 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA D 860 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M1G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS N-UTILIZATION SUBSTANCE G REMARK 900 (NUSG), SPACE GROUP P2(1) REMARK 900 RELATED ID: 1M1H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS N-UTILIZATION SUBSTANCE G REMARK 900 (NUSG), SPACE GROUP I222 REMARK 900 RELATED ID: 1NPR RELATED DB: PDB DBREF 1NPP A 1 248 UNP O67757 NUSG_AQUAE 1 248 DBREF 1NPP B 1 248 UNP O67757 NUSG_AQUAE 1 248 DBREF 1NPP C 1 248 UNP O67757 NUSG_AQUAE 1 248 DBREF 1NPP D 1 248 UNP O67757 NUSG_AQUAE 1 248 SEQRES 1 A 248 MET SER GLU GLN GLN VAL GLN GLU LEU GLU LYS LYS TRP SEQRES 2 A 248 TYR ALA LEU GLN VAL GLU PRO GLY LYS GLU ASN GLU ALA SEQRES 3 A 248 LYS GLU ASN LEU LEU LYS VAL LEU GLU LEU GLU GLY LEU SEQRES 4 A 248 LYS ASP LEU VAL ASP GLU VAL ILE VAL PRO ALA GLU GLU SEQRES 5 A 248 LYS VAL VAL ILE ARG ALA GLN GLY LYS GLU LYS TYR ARG SEQRES 6 A 248 LEU SER LEU LYS GLY ASN ALA ARG ASP ILE SER VAL LEU SEQRES 7 A 248 GLY LYS LYS GLY VAL THR THR PHE ARG ILE GLU ASN GLY SEQRES 8 A 248 GLU VAL LYS VAL VAL GLU SER VAL GLU GLY ASP THR CYS SEQRES 9 A 248 VAL ASN ALA PRO PRO ILE SER LYS PRO GLY GLN LYS ILE SEQRES 10 A 248 THR CYS LYS GLU ASN LYS THR GLU ALA LYS ILE VAL LEU SEQRES 11 A 248 ASP ASN LYS ILE PHE PRO GLY TYR ILE LEU ILE LYS ALA SEQRES 12 A 248 HIS MET ASN ASP LYS LEU LEU MET ALA ILE GLU LYS THR SEQRES 13 A 248 PRO HIS VAL PHE ARG PRO VAL MET VAL GLY GLY LYS PRO SEQRES 14 A 248 VAL PRO LEU LYS GLU GLU GLU VAL GLN ASN ILE LEU ASN SEQRES 15 A 248 GLN ILE LYS ARG GLY VAL LYS PRO SER LYS VAL GLU PHE SEQRES 16 A 248 GLU LYS GLY ASP GLN VAL ARG VAL ILE GLU GLY PRO PHE SEQRES 17 A 248 MET ASN PHE THR GLY THR VAL GLU GLU VAL HIS PRO GLU SEQRES 18 A 248 LYS ARG LYS LEU THR VAL MET ILE SER ILE PHE GLY ARG SEQRES 19 A 248 MET THR PRO VAL GLU LEU ASP PHE ASP GLN VAL GLU LYS SEQRES 20 A 248 ILE SEQRES 1 B 248 MET SER GLU GLN GLN VAL GLN GLU LEU GLU LYS LYS TRP SEQRES 2 B 248 TYR ALA LEU GLN VAL GLU PRO GLY LYS GLU ASN GLU ALA SEQRES 3 B 248 LYS GLU ASN LEU LEU LYS VAL LEU GLU LEU GLU GLY LEU SEQRES 4 B 248 LYS ASP LEU VAL ASP GLU VAL ILE VAL PRO ALA GLU GLU SEQRES 5 B 248 LYS VAL VAL ILE ARG ALA GLN GLY LYS GLU LYS TYR ARG SEQRES 6 B 248 LEU SER LEU LYS GLY ASN ALA ARG ASP ILE SER VAL LEU SEQRES 7 B 248 GLY LYS LYS GLY VAL THR THR PHE ARG ILE GLU ASN GLY SEQRES 8 B 248 GLU VAL LYS VAL VAL GLU SER VAL GLU GLY ASP THR CYS SEQRES 9 B 248 VAL ASN ALA PRO PRO ILE SER LYS PRO GLY GLN LYS ILE SEQRES 10 B 248 THR CYS LYS GLU ASN LYS THR GLU ALA LYS ILE VAL LEU SEQRES 11 B 248 ASP ASN LYS ILE PHE PRO GLY TYR ILE LEU ILE LYS ALA SEQRES 12 B 248 HIS MET ASN ASP LYS LEU LEU MET ALA ILE GLU LYS THR SEQRES 13 B 248 PRO HIS VAL PHE ARG PRO VAL MET VAL GLY GLY LYS PRO SEQRES 14 B 248 VAL PRO LEU LYS GLU GLU GLU VAL GLN ASN ILE LEU ASN SEQRES 15 B 248 GLN ILE LYS ARG GLY VAL LYS PRO SER LYS VAL GLU PHE SEQRES 16 B 248 GLU LYS GLY ASP GLN VAL ARG VAL ILE GLU GLY PRO PHE SEQRES 17 B 248 MET ASN PHE THR GLY THR VAL GLU GLU VAL HIS PRO GLU SEQRES 18 B 248 LYS ARG LYS LEU THR VAL MET ILE SER ILE PHE GLY ARG SEQRES 19 B 248 MET THR PRO VAL GLU LEU ASP PHE ASP GLN VAL GLU LYS SEQRES 20 B 248 ILE SEQRES 1 C 248 MET SER GLU GLN GLN VAL GLN GLU LEU GLU LYS LYS TRP SEQRES 2 C 248 TYR ALA LEU GLN VAL GLU PRO GLY LYS GLU ASN GLU ALA SEQRES 3 C 248 LYS GLU ASN LEU LEU LYS VAL LEU GLU LEU GLU GLY LEU SEQRES 4 C 248 LYS ASP LEU VAL ASP GLU VAL ILE VAL PRO ALA GLU GLU SEQRES 5 C 248 LYS VAL VAL ILE ARG ALA GLN GLY LYS GLU LYS TYR ARG SEQRES 6 C 248 LEU SER LEU LYS GLY ASN ALA ARG ASP ILE SER VAL LEU SEQRES 7 C 248 GLY LYS LYS GLY VAL THR THR PHE ARG ILE GLU ASN GLY SEQRES 8 C 248 GLU VAL LYS VAL VAL GLU SER VAL GLU GLY ASP THR CYS SEQRES 9 C 248 VAL ASN ALA PRO PRO ILE SER LYS PRO GLY GLN LYS ILE SEQRES 10 C 248 THR CYS LYS GLU ASN LYS THR GLU ALA LYS ILE VAL LEU SEQRES 11 C 248 ASP ASN LYS ILE PHE PRO GLY TYR ILE LEU ILE LYS ALA SEQRES 12 C 248 HIS MET ASN ASP LYS LEU LEU MET ALA ILE GLU LYS THR SEQRES 13 C 248 PRO HIS VAL PHE ARG PRO VAL MET VAL GLY GLY LYS PRO SEQRES 14 C 248 VAL PRO LEU LYS GLU GLU GLU VAL GLN ASN ILE LEU ASN SEQRES 15 C 248 GLN ILE LYS ARG GLY VAL LYS PRO SER LYS VAL GLU PHE SEQRES 16 C 248 GLU LYS GLY ASP GLN VAL ARG VAL ILE GLU GLY PRO PHE SEQRES 17 C 248 MET ASN PHE THR GLY THR VAL GLU GLU VAL HIS PRO GLU SEQRES 18 C 248 LYS ARG LYS LEU THR VAL MET ILE SER ILE PHE GLY ARG SEQRES 19 C 248 MET THR PRO VAL GLU LEU ASP PHE ASP GLN VAL GLU LYS SEQRES 20 C 248 ILE SEQRES 1 D 248 MET SER GLU GLN GLN VAL GLN GLU LEU GLU LYS LYS TRP SEQRES 2 D 248 TYR ALA LEU GLN VAL GLU PRO GLY LYS GLU ASN GLU ALA SEQRES 3 D 248 LYS GLU ASN LEU LEU LYS VAL LEU GLU LEU GLU GLY LEU SEQRES 4 D 248 LYS ASP LEU VAL ASP GLU VAL ILE VAL PRO ALA GLU GLU SEQRES 5 D 248 LYS VAL VAL ILE ARG ALA GLN GLY LYS GLU LYS TYR ARG SEQRES 6 D 248 LEU SER LEU LYS GLY ASN ALA ARG ASP ILE SER VAL LEU SEQRES 7 D 248 GLY LYS LYS GLY VAL THR THR PHE ARG ILE GLU ASN GLY SEQRES 8 D 248 GLU VAL LYS VAL VAL GLU SER VAL GLU GLY ASP THR CYS SEQRES 9 D 248 VAL ASN ALA PRO PRO ILE SER LYS PRO GLY GLN LYS ILE SEQRES 10 D 248 THR CYS LYS GLU ASN LYS THR GLU ALA LYS ILE VAL LEU SEQRES 11 D 248 ASP ASN LYS ILE PHE PRO GLY TYR ILE LEU ILE LYS ALA SEQRES 12 D 248 HIS MET ASN ASP LYS LEU LEU MET ALA ILE GLU LYS THR SEQRES 13 D 248 PRO HIS VAL PHE ARG PRO VAL MET VAL GLY GLY LYS PRO SEQRES 14 D 248 VAL PRO LEU LYS GLU GLU GLU VAL GLN ASN ILE LEU ASN SEQRES 15 D 248 GLN ILE LYS ARG GLY VAL LYS PRO SER LYS VAL GLU PHE SEQRES 16 D 248 GLU LYS GLY ASP GLN VAL ARG VAL ILE GLU GLY PRO PHE SEQRES 17 D 248 MET ASN PHE THR GLY THR VAL GLU GLU VAL HIS PRO GLU SEQRES 18 D 248 LYS ARG LYS LEU THR VAL MET ILE SER ILE PHE GLY ARG SEQRES 19 D 248 MET THR PRO VAL GLU LEU ASP PHE ASP GLN VAL GLU LYS SEQRES 20 D 248 ILE HET IPA D 859 4 HET IPA D 860 4 HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 5 IPA 2(C3 H8 O) FORMUL 7 HOH *858(H2 O) HELIX 1 1 LYS A 22 GLU A 37 1 16 HELIX 2 2 LEU A 39 ASP A 41 5 3 HELIX 3 3 ASP A 102 ALA A 107 5 6 HELIX 4 4 ASN A 146 LYS A 155 1 10 HELIX 5 5 LYS A 173 GLY A 187 1 15 HELIX 6 6 LYS B 22 GLU B 37 1 16 HELIX 7 7 LEU B 39 ASP B 41 5 3 HELIX 8 8 ASP B 102 ALA B 107 5 6 HELIX 9 9 ASN B 146 LYS B 155 1 10 HELIX 10 10 LYS B 173 GLY B 187 1 15 HELIX 11 11 LYS C 22 GLY C 38 1 17 HELIX 12 12 LEU C 39 ASP C 41 5 3 HELIX 13 13 ASP C 102 ALA C 107 5 6 HELIX 14 14 ASN C 146 THR C 156 1 11 HELIX 15 15 LYS C 173 GLY C 187 1 15 HELIX 16 16 LYS D 22 GLU D 37 1 16 HELIX 17 17 LEU D 39 ASP D 41 5 3 HELIX 18 18 THR D 103 ALA D 107 5 5 HELIX 19 19 ASN D 146 LYS D 155 1 10 HELIX 20 20 LYS D 173 GLN D 183 1 11 SHEET 1 A 4 VAL A 43 ILE A 47 0 SHEET 2 A 4 TYR A 138 ALA A 143 -1 O LEU A 140 N ILE A 47 SHEET 3 A 4 LYS A 12 VAL A 18 -1 N LYS A 12 O ALA A 143 SHEET 4 A 4 VAL A 159 PRO A 162 -1 O ARG A 161 N GLN A 17 SHEET 1 B 4 GLU A 62 SER A 67 0 SHEET 2 B 4 GLU A 52 ALA A 58 -1 N VAL A 54 O LEU A 66 SHEET 3 B 4 THR A 124 LEU A 130 -1 O VAL A 129 N LYS A 53 SHEET 4 B 4 LYS A 116 CYS A 119 -1 N CYS A 119 O THR A 124 SHEET 1 C 3 ARG A 73 LEU A 78 0 SHEET 2 C 3 VAL A 83 GLU A 89 -1 O PHE A 86 N ILE A 75 SHEET 3 C 3 GLU A 92 GLU A 97 -1 O LYS A 94 N ARG A 87 SHEET 1 D 2 MET A 164 VAL A 165 0 SHEET 2 D 2 LYS A 168 PRO A 169 -1 O LYS A 168 N VAL A 165 SHEET 1 E 5 ARG A 234 ASP A 241 0 SHEET 2 E 5 LYS A 224 ILE A 231 -1 N LEU A 225 O LEU A 240 SHEET 3 E 5 THR A 212 HIS A 219 -1 N THR A 214 O MET A 228 SHEET 4 E 5 GLN A 200 VAL A 203 -1 N VAL A 201 O GLY A 213 SHEET 5 E 5 VAL A 245 LYS A 247 -1 O GLU A 246 N ARG A 202 SHEET 1 F 4 VAL B 43 ILE B 47 0 SHEET 2 F 4 TYR B 138 ALA B 143 -1 O LEU B 140 N ILE B 47 SHEET 3 F 4 LYS B 12 VAL B 18 -1 N LEU B 16 O ILE B 139 SHEET 4 F 4 VAL B 159 PRO B 162 -1 O ARG B 161 N GLN B 17 SHEET 1 G 4 LYS B 61 SER B 67 0 SHEET 2 G 4 GLU B 51 ALA B 58 -1 N VAL B 54 O LEU B 66 SHEET 3 G 4 THR B 124 ASP B 131 -1 O LYS B 127 N VAL B 55 SHEET 4 G 4 LYS B 116 CYS B 119 -1 N CYS B 119 O THR B 124 SHEET 1 H 3 ARG B 73 LEU B 78 0 SHEET 2 H 3 VAL B 83 GLU B 89 -1 O PHE B 86 N ILE B 75 SHEET 3 H 3 GLU B 92 GLU B 97 -1 O GLU B 97 N THR B 85 SHEET 1 I 2 MET B 164 VAL B 165 0 SHEET 2 I 2 LYS B 168 PRO B 169 -1 O LYS B 168 N VAL B 165 SHEET 1 J 5 ARG B 234 ASP B 241 0 SHEET 2 J 5 LYS B 224 ILE B 231 -1 N VAL B 227 O VAL B 238 SHEET 3 J 5 THR B 212 GLU B 217 -1 N THR B 214 O MET B 228 SHEET 4 J 5 GLN B 200 VAL B 203 -1 N VAL B 201 O GLY B 213 SHEET 5 J 5 VAL B 245 LYS B 247 -1 O GLU B 246 N ARG B 202 SHEET 1 K 4 VAL C 43 ILE C 47 0 SHEET 2 K 4 TYR C 138 ALA C 143 -1 O LEU C 140 N ILE C 47 SHEET 3 K 4 LYS C 12 VAL C 18 -1 N LEU C 16 O ILE C 139 SHEET 4 K 4 VAL C 159 PRO C 162 -1 O ARG C 161 N GLN C 17 SHEET 1 L 4 LYS C 61 SER C 67 0 SHEET 2 L 4 GLU C 51 ALA C 58 -1 N ILE C 56 O LYS C 63 SHEET 3 L 4 THR C 124 ASP C 131 -1 O VAL C 129 N LYS C 53 SHEET 4 L 4 LYS C 116 CYS C 119 -1 N CYS C 119 O THR C 124 SHEET 1 M 3 ARG C 73 LEU C 78 0 SHEET 2 M 3 VAL C 83 GLU C 89 -1 O ILE C 88 N ARG C 73 SHEET 3 M 3 GLU C 92 GLU C 97 -1 O LYS C 94 N ARG C 87 SHEET 1 N 2 MET C 164 VAL C 165 0 SHEET 2 N 2 LYS C 168 PRO C 169 -1 O LYS C 168 N VAL C 165 SHEET 1 O 5 ARG C 234 GLU C 239 0 SHEET 2 O 5 LEU C 225 ILE C 231 -1 N ILE C 229 O THR C 236 SHEET 3 O 5 THR C 212 VAL C 218 -1 N THR C 214 O MET C 228 SHEET 4 O 5 GLN C 200 VAL C 203 -1 N VAL C 201 O GLY C 213 SHEET 5 O 5 GLN C 244 GLU C 246 -1 O VAL C 245 N ARG C 202 SHEET 1 P 4 VAL D 43 ILE D 47 0 SHEET 2 P 4 TYR D 138 ALA D 143 -1 O LEU D 140 N ILE D 47 SHEET 3 P 4 LYS D 12 VAL D 18 -1 N LEU D 16 O ILE D 139 SHEET 4 P 4 VAL D 159 PRO D 162 -1 O PHE D 160 N GLN D 17 SHEET 1 Q 4 VAL D 43 ILE D 47 0 SHEET 2 Q 4 TYR D 138 ALA D 143 -1 O LEU D 140 N ILE D 47 SHEET 3 Q 4 LYS D 12 VAL D 18 -1 N LEU D 16 O ILE D 139 SHEET 4 Q 4 PRO D 171 LEU D 172 -1 O LEU D 172 N TRP D 13 SHEET 1 R 4 LYS D 61 SER D 67 0 SHEET 2 R 4 GLU D 51 ALA D 58 -1 N ILE D 56 O LYS D 63 SHEET 3 R 4 THR D 124 ASP D 131 -1 O LYS D 127 N VAL D 55 SHEET 4 R 4 LYS D 116 CYS D 119 -1 N CYS D 119 O THR D 124 SHEET 1 S 3 ARG D 73 LEU D 78 0 SHEET 2 S 3 VAL D 83 GLU D 89 -1 O PHE D 86 N ILE D 75 SHEET 3 S 3 GLU D 92 GLU D 97 -1 O LYS D 94 N ARG D 87 SHEET 1 T 2 MET D 164 VAL D 165 0 SHEET 2 T 2 LYS D 168 PRO D 169 -1 O LYS D 168 N VAL D 165 SHEET 1 U 4 GLN D 200 ARG D 202 0 SHEET 2 U 4 THR D 212 VAL D 215 -1 O GLY D 213 N VAL D 201 SHEET 3 U 4 LEU D 225 ILE D 231 -1 O MET D 228 N THR D 214 SHEET 4 U 4 ARG D 234 LEU D 240 -1 O VAL D 238 N VAL D 227 SSBOND 1 CYS A 104 CYS A 119 1555 1555 1.90 SSBOND 2 CYS B 104 CYS B 119 1555 1555 2.07 SSBOND 3 CYS C 104 CYS C 119 1555 1555 2.11 SSBOND 4 CYS D 104 CYS D 119 1555 1555 2.00 SITE 1 AC1 1 HOH D1063 SITE 1 AC2 5 GLU D 37 MET D 151 LYS D 155 HOH D1055 SITE 2 AC2 5 HOH D1073 CRYST1 87.070 55.860 112.610 90.00 90.39 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011486 0.000000 0.000078 0.00000 SCALE2 0.000000 0.017902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008880 0.00000