HEADER OXIDOREDUCTASE(H2O2(A)) 02-AUG-91 1NPX TITLE STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS 10C1 REFINED TITLE 2 AT 2.16 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351 KEYWDS OXIDOREDUCTASE(H2O2(A)) EXPDTA X-RAY DIFFRACTION AUTHOR T.STEHLE,S.A.AHMED,A.CLAIBORNE,G.E.SCHULZ REVDAT 5 05-JUN-24 1NPX 1 REMARK LINK REVDAT 4 13-JUL-11 1NPX 1 VERSN REVDAT 3 24-FEB-09 1NPX 1 VERSN REVDAT 2 01-APR-03 1NPX 1 JRNL REVDAT 1 31-JAN-94 1NPX 0 JRNL AUTH T.STEHLE,S.A.AHMED,A.CLAIBORNE,G.E.SCHULZ JRNL TITL STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS JRNL TITL 2 10C1 REFINED AT 2.16 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 221 1325 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1942054 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.P.ROSS,A.CLAIBORNE REMARK 1 TITL CLONING, SEQUENCE AND OVEREXPRESSION OF NADH PEROXIDASE FROM REMARK 1 TITL 2 STREPTOCOCCUS FAECALIS 10C1. STRUCTURAL RELATIONSHIP WITH REMARK 1 TITL 3 THE FLAVOPROTEIN DISULFIDE REDUCTASES REMARK 1 REF J.MOL.BIOL. V. 221 857 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.STEHLE,S.A.AHMED,A.CLAIBORNE,G.E.SCHULZ REMARK 1 TITL THE STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS REMARK 1 TITL 2 AT 3.3 ANGSTROMS RESOLUTION REMARK 1 REF FEBS LETT. V. 267 186 1990 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.B.POOLE,A.CLAIBORNE REMARK 1 TITL THE NON-FLAVIN REDOX CENTER OF THE STREPTOCOCCAL NADH REMARK 1 TITL 2 PEROXIDASE. II. EVIDENCE FOR A STABILIZED CYSTEINE-SULFENIC REMARK 1 TITL 3 ACID REMARK 1 REF J.BIOL.CHEM. V. 264 12330 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.B.POOLE,A.CLAIBORNE REMARK 1 TITL THE NON-FLAVIN REDOX CENTER OF THE STREPTOCOCCAL NADH REMARK 1 TITL 2 PEROXIDASE. I. THIOL REACTIVITY AND REDOX BEHAVIOR IN THE REMARK 1 TITL 3 PRESENCE OF UREA REMARK 1 REF J.BIOL.CHEM. V. 264 12322 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 5 REMARK 1 AUTH L.B.POOLE,A.CLAIBORNE REMARK 1 TITL INTERACTIONS OF PYRIDINE NUCLEOTIDES WITH REDOX FORMS OF THE REMARK 1 TITL 2 FLAVIN-CONTAINING NADH PEROXIDASE FROM STREPTOCOCCUS REMARK 1 TITL 3 FAECALIS REMARK 1 REF J.BIOL.CHEM. V. 261 14525 1986 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3493 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.95000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.95000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.60000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.95000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.60000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 134.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 475 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 87 NE2 HIS A 87 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 30 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 30 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 THR A 80 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR A 104 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 124 CA - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 136 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 136 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 146 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 189 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 LEU A 237 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 TRP A 250 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 250 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 270 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 270 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 279 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 303 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 303 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET A 345 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 TYR A 362 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP A 374 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 374 CB - CG - CD1 ANGL. DEV. = -9.0 DEGREES REMARK 500 TRP A 374 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 432 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 432 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 123 -50.33 -14.92 REMARK 500 ASN A 127 33.91 70.25 REMARK 500 ASN A 205 58.84 34.60 REMARK 500 GLN A 224 -30.59 -135.46 REMARK 500 ASP A 266 -167.05 -100.74 REMARK 500 PRO A 316 85.47 -68.71 REMARK 500 PHE A 332 -118.15 51.29 REMARK 500 ASN A 342 -167.64 -122.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 449 DBREF 1NPX A 1 447 UNP P37062 NAPE_ENTFA 1 447 SEQRES 1 A 447 MET LYS VAL ILE VAL LEU GLY SER SER HIS GLY GLY TYR SEQRES 2 A 447 GLU ALA VAL GLU GLU LEU LEU ASN LEU HIS PRO ASP ALA SEQRES 3 A 447 GLU ILE GLN TRP TYR GLU LYS GLY ASP PHE ILE SER PHE SEQRES 4 A 447 LEU SER OCS GLY MET GLN LEU TYR LEU GLU GLY LYS VAL SEQRES 5 A 447 LYS ASP VAL ASN SER VAL ARG TYR MET THR GLY GLU LYS SEQRES 6 A 447 MET GLU SER ARG GLY VAL ASN VAL PHE SER ASN THR GLU SEQRES 7 A 447 ILE THR ALA ILE GLN PRO LYS GLU HIS GLN VAL THR VAL SEQRES 8 A 447 LYS ASP LEU VAL SER GLY GLU GLU ARG VAL GLU ASN TYR SEQRES 9 A 447 ASP LYS LEU ILE ILE SER PRO GLY ALA VAL PRO PHE GLU SEQRES 10 A 447 LEU ASP ILE PRO GLY LYS ASP LEU ASP ASN ILE TYR LEU SEQRES 11 A 447 MET ARG GLY ARG GLN TRP ALA ILE LYS LEU LYS GLN LYS SEQRES 12 A 447 THR VAL ASP PRO GLU VAL ASN ASN VAL VAL VAL ILE GLY SEQRES 13 A 447 SER GLY TYR ILE GLY ILE GLU ALA ALA GLU ALA PHE ALA SEQRES 14 A 447 LYS ALA GLY LYS LYS VAL THR VAL ILE ASP ILE LEU ASP SEQRES 15 A 447 ARG PRO LEU GLY VAL TYR LEU ASP LYS GLU PHE THR ASP SEQRES 16 A 447 VAL LEU THR GLU GLU MET GLU ALA ASN ASN ILE THR ILE SEQRES 17 A 447 ALA THR GLY GLU THR VAL GLU ARG TYR GLU GLY ASP GLY SEQRES 18 A 447 ARG VAL GLN LYS VAL VAL THR ASP LYS ASN ALA TYR ASP SEQRES 19 A 447 ALA ASP LEU VAL VAL VAL ALA VAL GLY VAL ARG PRO ASN SEQRES 20 A 447 THR ALA TRP LEU LYS GLY THR LEU GLU LEU HIS PRO ASN SEQRES 21 A 447 GLY LEU ILE LYS THR ASP GLU TYR MET ARG THR SER GLU SEQRES 22 A 447 PRO ASP VAL PHE ALA VAL GLY ASP ALA THR LEU ILE LYS SEQRES 23 A 447 TYR ASN PRO ALA ASP THR GLU VAL ASN ILE ALA LEU ALA SEQRES 24 A 447 THR ASN ALA ARG LYS GLN GLY ARG PHE ALA VAL LYS ASN SEQRES 25 A 447 LEU GLU GLU PRO VAL LYS PRO PHE PRO GLY VAL GLN GLY SEQRES 26 A 447 SER SER GLY LEU ALA VAL PHE ASP TYR LYS PHE ALA SER SEQRES 27 A 447 THR GLY ILE ASN GLU VAL MET ALA GLN LYS LEU GLY LYS SEQRES 28 A 447 GLU THR LYS ALA VAL THR VAL VAL GLU ASP TYR LEU MET SEQRES 29 A 447 ASP PHE ASN PRO ASP LYS GLN LYS ALA TRP PHE LYS LEU SEQRES 30 A 447 VAL TYR ASP PRO GLU THR THR GLN ILE LEU GLY ALA GLN SEQRES 31 A 447 LEU MET SER LYS ALA ASP LEU THR ALA ASN ILE ASN ALA SEQRES 32 A 447 ILE SER LEU ALA ILE GLN ALA LYS MET THR ILE GLU ASP SEQRES 33 A 447 LEU ALA TYR ALA ASP PHE PHE PHE GLN PRO ALA PHE ASP SEQRES 34 A 447 LYS PRO TRP ASN ILE ILE ASN THR ALA ALA LEU GLU ALA SEQRES 35 A 447 VAL LYS GLN GLU ARG MODRES 1NPX OCS A 42 CYS CYSTEINESULFONIC ACID HET OCS A 42 9 HET FAD A 449 53 HETNAM OCS CYSTEINESULFONIC ACID HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *369(H2 O) HELIX 1 H1 SER A 9 HIS A 23 1 15 HELIX 2 H2 GLY A 43 GLU A 49 1 7 HELIX 3 H3 THR A 62 ARG A 69 1 8 HELIX 4 H4 GLY A 133 THR A 144 1 12 HELIX 5 H5 GLY A 158 ALA A 171 1 14 HELIX 6 H6 ASP A 190 ALA A 203 1 14 HELIX 7 H7 LEU A 298 ASN A 312 1 15 HELIX 8 H8 ASN A 342 LEU A 349 1 8 HELIX 9 H9 ILE A 401 ALA A 410 1 10 HELIX 10 H10 THR A 413 TYR A 419 1 7 HELIX 11 H11 ASN A 433 GLU A 446 1 14 SHEET 1 S1 5 ASN A 72 PHE A 74 0 SHEET 2 S1 5 GLU A 27 GLU A 32 1 O ILE A 28 N ASN A 72 SHEET 3 S1 5 MET A 1 GLY A 7 1 O MET A 1 N GLU A 27 SHEET 4 S1 5 LYS A 106 SER A 110 1 N LYS A 106 O LYS A 2 SHEET 5 S1 5 ASP A 275 VAL A 279 1 O ASP A 275 N LEU A 107 SHEET 1 S2 3 ASN A 76 GLN A 83 0 SHEET 2 S2 3 HIS A 87 LEU A 94 -1 N LEU A 94 O ASN A 76 SHEET 3 S2 3 GLU A 98 TYR A 104 -1 O GLU A 98 N ASP A 93 SHEET 1 S3 5 ASN A 127 TYR A 129 0 SHEET 2 S3 5 LEU A 237 ALA A 241 1 N VAL A 238 O ASN A 127 SHEET 3 S3 5 ASN A 150 GLY A 156 1 O ASN A 151 N LEU A 237 SHEET 4 S3 5 LYS A 174 ASP A 179 1 N LYS A 174 O ASN A 150 SHEET 5 S3 5 THR A 207 ALA A 209 1 N THR A 207 O VAL A 175 SHEET 1 S4 3 ARG A 216 GLU A 218 0 SHEET 2 S4 3 GLN A 224 THR A 228 -1 N LYS A 225 O GLU A 218 SHEET 3 S4 3 ASN A 231 ALA A 235 -1 O ASN A 231 N THR A 228 SHEET 1 S5 5 SER A 327 VAL A 331 0 SHEET 2 S5 5 TYR A 334 THR A 339 -1 N TYR A 334 O VAL A 331 SHEET 3 S5 5 GLY A 388 SER A 393 -1 N ALA A 389 O THR A 339 SHEET 4 S5 5 GLN A 371 TYR A 379 -1 N TRP A 374 O MET A 392 SHEET 5 S5 5 LYS A 354 TYR A 362 -1 N TYR A 362 O GLN A 371 LINK C SER A 41 N OCS A 42 1555 1555 1.35 LINK C OCS A 42 N GLY A 43 1555 1555 1.35 SITE 1 AC2 26 SER A 9 HIS A 10 GLY A 11 GLU A 32 SITE 2 AC2 26 LYS A 33 ILE A 79 SER A 110 PRO A 111 SITE 3 AC2 26 GLY A 112 ALA A 113 ARG A 132 TYR A 159 SITE 4 AC2 26 ASN A 247 GLY A 280 ASP A 281 ALA A 297 SITE 5 AC2 26 LEU A 298 ALA A 299 PHE A 424 HOH A 453 SITE 6 AC2 26 HOH A 491 HOH A 501 HOH A 533 HOH A 536 SITE 7 AC2 26 HOH A 688 HOH A 752 SITE 1 AC1 31 LEU A 6 GLY A 7 SER A 9 HIS A 10 SITE 2 AC1 31 GLY A 11 GLU A 32 LYS A 33 SER A 41 SITE 3 AC1 31 OCS A 42 GLU A 78 ILE A 79 SER A 110 SITE 4 AC1 31 PRO A 111 GLY A 112 ALA A 113 ARG A 132 SITE 5 AC1 31 TYR A 159 ILE A 160 ASN A 247 GLY A 280 SITE 6 AC1 31 ASP A 281 ALA A 297 LEU A 298 ALA A 299 SITE 7 AC1 31 PHE A 424 GLN A 425 HOH A 453 HOH A 491 SITE 8 AC1 31 HOH A 501 HOH A 533 HOH A 752 CRYST1 77.200 134.500 145.900 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006854 0.00000