HEADER HYDROLASE/HYDROLASE RECEPTOR 18-JAN-94 1NRQ TITLE CRYSTALLOGRAPHIC STRUCTURES OF THROMBIN COMPLEXED WITH THROMBIN TITLE 2 RECEPTOR PEPTIDES: EXISTENCE OF EXPECTED AND NOVEL BINDING MODES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-THROMBIN (SMALL SUBUNIT); COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALPHA-THROMBIN (LARGE SUBUNIT); COMPND 8 CHAIN: H; COMPND 9 EC: 3.4.21.5; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RECEPTOR BASED PEPTIDE D-FPR'S; COMPND 13 CHAIN: R; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3 KEYWDS SERINE PROTEINASE, RECEPTOR, HYDROLASE-HYDROLASE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY,I.I.MATHEWS REVDAT 5 15-NOV-23 1NRQ 1 REMARK SEQADV SSBOND LINK REVDAT 5 2 1 ATOM REVDAT 4 25-AUG-09 1NRQ 1 SOURCE REVDAT 3 24-FEB-09 1NRQ 1 VERSN REVDAT 2 30-SEP-03 1NRQ 1 JRNL DBREF REVDAT 1 31-MAY-94 1NRQ 0 JRNL AUTH I.I.MATHEWS,K.P.PADMANABHAN,V.GANESH,A.TULINSKY,M.ISHII, JRNL AUTH 2 J.CHEN,C.W.TURCK,S.R.COUGHLIN,J.W.FENTON 2ND. JRNL TITL CRYSTALLOGRAPHIC STRUCTURES OF THROMBIN COMPLEXED WITH JRNL TITL 2 THROMBIN RECEPTOR PEPTIDES: EXISTENCE OF EXPECTED AND NOVEL JRNL TITL 3 BINDING MODES. JRNL REF BIOCHEMISTRY V. 33 3266 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 8136362 JRNL DOI 10.1021/BI00177A018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.RYDEL,A.TULINSKY,W.BODE,R.HUBER REMARK 1 TITL REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX REMARK 1 REF J.MOL.BIOL. V. 221 583 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,V.E.CARPEROS,K.G.RAVICHANDRAN, REMARK 1 AUTH 2 A.TULINSKY,M.WESTBROOK,J.M.MARAGANORE REMARK 1 TITL STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES OF REMARK 1 TITL 2 ALPHA-THROMBIN REMARK 1 REF J.MOL.BIOL. V. 221 1379 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 3556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2200 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.029 ; 0.035 REMARK 3 ANGLE DISTANCE (A) : 0.057 ; 0.060 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.061 ; 0.080 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.012 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.110 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.270 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.360 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.380 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.000 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 23.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.340 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.640 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.510 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.880 ; 2.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3556 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.20000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 RESIDUES DPN R 39 AND R 43 ARE D-PHE. REMARK 400 REMARK 400 THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN REMARK 400 INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN REMARK 400 INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN REMARK 400 INDICATOR *R* IS USED FOR D-FPR'S. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L -6 REMARK 465 PHE L -5 REMARK 465 GLY L -4 REMARK 465 SER L -3 REMARK 465 GLY L -2 REMARK 465 GLU L -1 REMARK 465 ALA L 0 REMARK 465 SER L 15 REMARK 465 TYR L 16 REMARK 465 ILE L 17 REMARK 465 ASP L 18 REMARK 465 GLY L 19 REMARK 465 ARG L 20 REMARK 465 THR H 146A REMARK 465 TRP H 146B REMARK 465 THR H 146C REMARK 465 ALA H 146D REMARK 465 ASN H 146E REMARK 465 VAL H 146F REMARK 465 GLY H 146G REMARK 465 LYS H 146H REMARK 465 GLN H 239 REMARK 465 LYS H 240 REMARK 465 VAL H 241 REMARK 465 ILE H 242 REMARK 465 ASP H 243 REMARK 465 GLN H 244 REMARK 465 PHE H 245 REMARK 465 GLY H 246 REMARK 465 GLU H 247 REMARK 465 LEU R 45 REMARK 465 ARG R 46 REMARK 465 ASN R 47 REMARK 465 PRO R 48 REMARK 465 ASN R 49 REMARK 465 ASP R 50 REMARK 465 TRP R 56 REMARK 465 GLU R 57 REMARK 465 ASP R 58 REMARK 465 GLU R 59 REMARK 465 GLU R 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG H 50 CG CD NE CZ NH1 NH2 REMARK 470 THR H 60I OG1 CG2 REMARK 470 LYS H 70 CG CD CE NZ REMARK 470 ARG H 137 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 173 CG CD NE CZ NH1 NH2 REMARK 470 HMR R 41 CC CG CD NE CZ NH1 NH2 REMARK 470 DPN R 43 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU R 44 CB CG CD1 CD2 REMARK 470 LYS R 51 CB CG CD CE NZ REMARK 470 GLU R 53 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER H 129B NE2 GLN H 131 2.01 REMARK 500 O PHE H 232 N LYS H 235 2.03 REMARK 500 O LEU H 129C N GLN H 131 2.04 REMARK 500 O HIS H 57 N LEU H 59 2.04 REMARK 500 N SER H 72 OE2 GLU H 77 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU H 105 CB LEU H 105 CG -0.213 REMARK 500 ARG H 165 NE ARG H 165 CZ 0.123 REMARK 500 DPN R 39 N DPN R 39 CA 0.144 REMARK 500 DPN R 39 CB DPN R 39 CG 0.130 REMARK 500 DPN R 39 CE2 DPN R 39 CD2 0.124 REMARK 500 PRO R 40 CD PRO R 40 N -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 14D NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU L 14F CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP H 21 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP H 29 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 CYS H 42 CA - CB - SG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG H 67 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG H 75 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG H 77A NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG H 101 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU H 105 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU H 105 CA - CB - CG ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG H 126 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG H 126 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TRP H 141 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG H 165 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG H 187 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG H 187 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP H 194 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG H 206 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG H 206 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG H 221A O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG H 233 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 DPN R 39 CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 HMR R 41 C - N - CA ANGL. DEV. = -32.0 DEGREES REMARK 500 SER R 42 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS L 1 162.35 -46.61 REMARK 500 ARG L 4 102.41 -53.83 REMARK 500 PRO L 5 1.12 -57.00 REMARK 500 PHE L 7 -91.38 -135.33 REMARK 500 LYS L 9 -5.41 -47.24 REMARK 500 LYS L 10 56.84 -178.03 REMARK 500 LYS L 14A -38.18 -20.92 REMARK 500 LEU L 14G -17.87 -44.92 REMARK 500 GLU H 18 83.35 43.95 REMARK 500 ALA H 22 171.50 -59.43 REMARK 500 ILE H 24 104.86 -55.21 REMARK 500 MET H 26 2.10 -55.41 REMARK 500 SER H 27 60.89 178.80 REMARK 500 PRO H 28 1.94 -60.60 REMARK 500 SER H 36A 129.17 178.66 REMARK 500 PRO H 37 100.99 -43.11 REMARK 500 GLN H 38 96.40 -38.91 REMARK 500 ILE H 47 34.37 -93.30 REMARK 500 SER H 48 -174.89 -178.72 REMARK 500 ARG H 50 34.72 -155.76 REMARK 500 ALA H 55 153.98 -44.56 REMARK 500 CYS H 58 -8.35 -35.86 REMARK 500 ASP H 60E 107.45 -23.79 REMARK 500 ASN H 60G 133.81 178.78 REMARK 500 PHE H 60H -166.41 -125.29 REMARK 500 GLU H 61 -47.59 -28.76 REMARK 500 LYS H 70 65.45 -41.09 REMARK 500 ARG H 75 -168.47 -29.75 REMARK 500 GLU H 77 96.31 -59.99 REMARK 500 ARG H 77A -84.97 -63.67 REMARK 500 ASN H 78 33.34 -99.23 REMARK 500 ILE H 82 142.13 -172.70 REMARK 500 LYS H 87 136.53 169.88 REMARK 500 PRO H 92 0.59 -41.97 REMARK 500 ASN H 95 55.70 -119.82 REMARK 500 ASN H 98 6.36 -150.08 REMARK 500 LEU H 99 48.96 75.60 REMARK 500 ASP H 102 85.85 -58.87 REMARK 500 LYS H 107 97.27 -66.99 REMARK 500 SER H 115 170.42 176.86 REMARK 500 ASP H 116 -22.79 -29.41 REMARK 500 PRO H 124 169.17 -48.22 REMARK 500 ARG H 126 -32.46 -32.52 REMARK 500 GLU H 127 -74.61 -60.32 REMARK 500 ALA H 129 5.44 -57.56 REMARK 500 LEU H 129C -75.76 -74.18 REMARK 500 LEU H 130 75.15 -39.46 REMARK 500 ASN H 143 93.34 -53.11 REMARK 500 LEU H 144 -16.97 -45.45 REMARK 500 ARG H 165 -39.05 -38.49 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HMR R 41 SER R 42 -67.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) REMARK 999 SYSTEM IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT REMARK 999 WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., REMARK 999 1989, EMBO J. 8, 3467-3475). REMARK 999 2. THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. REMARK 999 CHAIN ID *L* IS USED FOR RESIDUES 1H-15, REMARK 999 CHAIN ID *H* IS USED FOR RESIDUES 16-247, REMARK 999 CHAIN ID *R* IS USED FOR D-FPR'S. DBREF 1NRQ L -6 20 UNP P00734 THRB_HUMAN 328 363 DBREF 1NRQ H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1NRQ R 40 60 UNP P25116 PAR1_HUMAN 40 60 SEQADV 1NRQ HMR R 41 UNP P25116 ARG 41 CONFLICT SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 R 22 DPN PRO HMR SER DPN LEU LEU ARG ASN PRO ASN ASP LYS SEQRES 2 R 22 TYR GLU PRO PHE TRP GLU ASP GLU GLU MODRES 1NRQ HMR R 41 ARG BETA-HOMOARGININE HET DPN R 39 11 HET HMR R 41 5 HET DPN R 43 4 HETNAM DPN D-PHENYLALANINE HETNAM HMR BETA-HOMOARGININE FORMUL 3 DPN 2(C9 H11 N O2) FORMUL 3 HMR C7 H16 N4 O2 HELIX 1 H1 ALA H 55 LEU H 60 1 6 HELIX 2 H2 GLU H 164 SER H 171 1 8 HELIX 3 H3 ASP H 125 LEU H 129C 1 8 HELIX 4 H4 VAL H 231 ILE H 238 1 8 SHEET 1 B1 7 PRO H 28 ARG H 35 0 SHEET 2 B1 7 CYS H 42 ASP H 49 -1 SHEET 3 B1 7 ARG H 50 ALA H 56 -1 SHEET 4 B1 7 ARG H 101 LYS H 110 -1 SHEET 5 B1 7 LYS H 81 PRO H 92 -1 SHEET 6 B1 7 ASP H 63 GLY H 69 -1 SHEET 7 B1 7 PRO H 28 ARG H 35 -1 SHEET 1 B2 7 GLY H 133 TRP H 141 0 SHEET 2 B2 7 LEU H 155 ILE H 162 -1 SHEET 3 B2 7 ASN H 179 PRO H 186 -1 SHEET 4 B2 7 GLY H 223 THR H 229 -1 SHEET 5 B2 7 ILE H 212 GLU H 217 -1 SHEET 6 B2 7 GLY H 193 MET H 201 -1 SHEET 7 B2 7 GLY H 133 TRP H 141 -1 SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.02 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.05 SSBOND 3 CYS H 168 CYS H 182 1555 1555 1.99 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.02 LINK C DPN R 39 N PRO R 40 1555 1555 1.31 LINK C PRO R 40 N HMR R 41 1555 1555 1.36 LINK C HMR R 41 N SER R 42 1555 1555 1.34 LINK C SER R 42 N DPN R 43 1555 1555 1.40 LINK C DPN R 43 N LEU R 44 1555 1555 1.37 CISPEP 1 SER H 36A PRO H 37 0 -2.13 SITE 1 CAT 3 HIS H 57 ASP H 102 SER H 195 CRYST1 130.400 52.100 63.500 90.00 101.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007669 0.000000 0.001491 0.00000 SCALE2 0.000000 0.019194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016043 0.00000