HEADER TRANSFERASE 03-FEB-03 1NVI TITLE ORTHORHOMBIC CRYSTAL FORM OF MOLYBDOPTERIN SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN CONVERTING FACTOR SUBUNIT 1; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: MOLYBDOPTERIN SYNTHASE - SMALL SUBUNIT; COMPND 5 SYNONYM: MPT SYNTHASE SUBUNIT 1, MOLYBDOPTERIN SYNTHASE SUBUNIT 1, COMPND 6 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D, MOLYBDOPTERIN CONVERTING COMPND 7 FACTOR SMALL SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: MOLYBDOPTERIN CONVERTING FACTOR SUBUNIT 2; COMPND 12 CHAIN: E; COMPND 13 FRAGMENT: MOLYBDOPTERIN SYNTHASE - LARGE SUBUNIT; COMPND 14 SYNONYM: MPT SYNTHASE SUBUNIT 2, MOLYBDOPTERIN SYNTHASE SUBUNIT 2, COMPND 15 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E, MOLYBDOPTERIN CONVERTING COMPND 16 FACTOR LARGE SUBUNIT; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MOAD OR CHLA4 OR CHLM OR B0784; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: MOAE OR CHLA5 OR B0785; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN-PROTEIN COMPLEX, MOLYBDENUM COFACTOR BIOSYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,M.M.WUEBBENS,O.TURQUE,K.V.RAJAGOPALAN,H.SCHINDELIN REVDAT 5 16-AUG-23 1NVI 1 REMARK REVDAT 4 27-OCT-21 1NVI 1 REMARK SEQADV REVDAT 3 13-JUL-11 1NVI 1 VERSN REVDAT 2 24-FEB-09 1NVI 1 VERSN REVDAT 1 06-MAY-03 1NVI 0 JRNL AUTH M.J.RUDOLPH,M.M.WUEBBENS,O.TURQUE,K.V.RAJAGOPALAN, JRNL AUTH 2 H.SCHINDELIN JRNL TITL STRUCTURAL STUDIES OF MOLYBDOPTERIN SYNTHASE PROVIDE JRNL TITL 2 INSIGHTS INTO ITS CATALYTIC MECHANISM JRNL REF J.BIOL.CHEM. V. 278 14514 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12571227 JRNL DOI 10.1074/JBC.M300449200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 21024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1335 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1758 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.58000 REMARK 3 B22 (A**2) : -2.32000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.457 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1829 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1643 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2485 ; 1.351 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3803 ; 1.147 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 5.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 269 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2031 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 350 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1896 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1061 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.091 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 0.639 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1786 ; 1.213 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 719 ; 1.680 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 699 ; 2.832 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 81 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7716 -12.0799 23.5148 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0782 REMARK 3 T33: 0.0566 T12: -0.0055 REMARK 3 T13: 0.0210 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.0567 L22: 5.1538 REMARK 3 L33: 1.5158 L12: 0.4240 REMARK 3 L13: 0.2623 L23: -0.9145 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.0432 S13: 0.0025 REMARK 3 S21: -0.0768 S22: 0.0006 S23: -0.1646 REMARK 3 S31: 0.0302 S32: 0.0930 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 150 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4635 11.7254 14.4891 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.0878 REMARK 3 T33: 0.0453 T12: -0.0305 REMARK 3 T13: 0.0065 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8415 L22: 3.2359 REMARK 3 L33: 1.4991 L12: -0.5194 REMARK 3 L13: -0.0902 L23: -0.2696 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.0069 S13: 0.0021 REMARK 3 S21: -0.0094 S22: 0.0201 S23: -0.0885 REMARK 3 S31: 0.1164 S32: 0.0861 S33: 0.0308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2000 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1FM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M (NH4)2SO4 AND 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETEROTETRAMER IN WHICH TWO REMARK 300 MOAE SUBUNITS DIMERIZE VIA A CRYSTALLOGRAPHIC TWOFOLD AXIS: -X, -Y+ REMARK 300 1/2, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 47.43000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 262 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 266 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 1 REMARK 465 ASN E 40 REMARK 465 HIS E 41 REMARK 465 ASN E 42 REMARK 465 LEU E 43 REMARK 465 GLY E 44 REMARK 465 ASP E 45 REMARK 465 SER E 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 181 O HOH E 252 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 63 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 THR E 59 CA - CB - CG2 ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 8 -136.00 56.83 REMARK 500 ASP D 48 148.65 122.47 REMARK 500 THR E 130 147.69 33.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 83 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 84 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 85 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FM0 RELATED DB: PDB REMARK 900 MONOCLINIC CRYSTAL FORM OF MOLYBDOPTERIN SYNTHASE REMARK 900 RELATED ID: 1FMA RELATED DB: PDB REMARK 900 MONOCLINIC CRYSTAL FORM OF MOLYBDOPTERIN SYNTHASE - COVALENT COMPLEX DBREF 1NVI D 1 81 UNP P30748 MOAD_ECOLI 1 81 DBREF 1NVI E 1 150 UNP P30749 MOAE_ECOLI 0 149 SEQADV 1NVI VAL D 2 UNP P30748 ILE 2 ENGINEERED MUTATION SEQRES 1 D 81 MET VAL LYS VAL LEU PHE PHE ALA GLN VAL ARG GLU LEU SEQRES 2 D 81 VAL GLY THR ASP ALA THR GLU VAL ALA ALA ASP PHE PRO SEQRES 3 D 81 THR VAL GLU ALA LEU ARG GLN HIS MET ALA ALA GLN SER SEQRES 4 D 81 ASP ARG TRP ALA LEU ALA LEU GLU ASP GLY LYS LEU LEU SEQRES 5 D 81 ALA ALA VAL ASN GLN THR LEU VAL SER PHE ASP HIS PRO SEQRES 6 D 81 LEU THR ASP GLY ASP GLU VAL ALA PHE PHE PRO PRO VAL SEQRES 7 D 81 THR GLY GLY SEQRES 1 E 150 MET ALA GLU THR LYS ILE VAL VAL GLY PRO GLN PRO PHE SEQRES 2 E 150 SER VAL GLY GLU GLU TYR PRO TRP LEU ALA GLU ARG ASP SEQRES 3 E 150 GLU ASP GLY ALA VAL VAL THR PHE THR GLY LYS VAL ARG SEQRES 4 E 150 ASN HIS ASN LEU GLY ASP SER VAL ASN ALA LEU THR LEU SEQRES 5 E 150 GLU HIS TYR PRO GLY MET THR GLU LYS ALA LEU ALA GLU SEQRES 6 E 150 ILE VAL ASP GLU ALA ARG ASN ARG TRP PRO LEU GLY ARG SEQRES 7 E 150 VAL THR VAL ILE HIS ARG ILE GLY GLU LEU TRP PRO GLY SEQRES 8 E 150 ASP GLU ILE VAL PHE VAL GLY VAL THR SER ALA HIS ARG SEQRES 9 E 150 SER SER ALA PHE GLU ALA GLY GLN PHE ILE MET ASP TYR SEQRES 10 E 150 LEU LYS THR ARG ALA PRO PHE TRP LYS ARG GLU ALA THR SEQRES 11 E 150 PRO GLU GLY ASP ARG TRP VAL GLU ALA ARG GLU SER ASP SEQRES 12 E 150 GLN GLN ALA ALA LYS ARG TRP HET SO4 D 82 5 HET SO4 D 83 5 HET GOL D 84 6 HET GOL D 85 6 HET SO4 E 151 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *198(H2 O) HELIX 1 1 PHE D 7 GLY D 15 1 9 HELIX 2 2 THR D 27 ALA D 37 1 11 HELIX 3 3 SER D 39 GLU D 47 1 9 HELIX 4 4 SER E 14 GLU E 24 1 11 HELIX 5 5 GLY E 57 TRP E 74 1 18 HELIX 6 6 HIS E 103 ALA E 122 1 20 HELIX 7 7 ARG E 140 ARG E 149 1 10 SHEET 1 A 5 ALA D 18 VAL D 21 0 SHEET 2 A 5 VAL D 2 PHE D 6 -1 N VAL D 4 O THR D 19 SHEET 3 A 5 GLU D 71 PHE D 75 1 O VAL D 72 N LYS D 3 SHEET 4 A 5 LEU D 52 VAL D 55 -1 N LEU D 52 O PHE D 75 SHEET 5 A 5 THR D 58 LEU D 59 -1 O THR D 58 N VAL D 55 SHEET 1 B 4 THR E 4 GLY E 9 0 SHEET 2 B 4 LEU E 76 ARG E 84 1 O VAL E 79 N LYS E 5 SHEET 3 B 4 GLU E 93 SER E 101 -1 O GLY E 98 N THR E 80 SHEET 4 B 4 ALA E 30 LYS E 37 -1 N GLY E 36 O ILE E 94 SHEET 1 C 4 GLY E 86 LEU E 88 0 SHEET 2 C 4 LEU E 50 HIS E 54 -1 N LEU E 50 O LEU E 88 SHEET 3 C 4 PHE E 124 GLU E 128 -1 O ARG E 127 N THR E 51 SHEET 4 C 4 ARG E 135 TRP E 136 -1 O ARG E 135 N GLU E 128 SITE 1 AC1 7 HIS E 103 ARG E 104 LYS E 119 HOH E 170 SITE 2 AC1 7 HOH E 196 HOH E 219 HOH E 246 SITE 1 AC2 6 SER D 61 PHE D 62 HOH D 92 HOH D 144 SITE 2 AC2 6 LYS E 148 HOH E 261 SITE 1 AC3 4 VAL D 60 SER D 61 HIS D 64 HOH D 131 SITE 1 AC4 3 SER D 39 ASP D 40 ARG D 41 SITE 1 AC5 4 ASN D 56 HIS D 64 HOH D 95 HOH D 100 CRYST1 44.578 94.860 137.440 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022433 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007276 0.00000