HEADER METAL BINDING PROTEIN 12-FEB-03 1NYA TITLE NMR SOLUTION STRUCTURE OF CALERYTHRIN, AN EF-HAND CALCIUM-BINDING TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALERYTHRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALCIUM-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPOLYSPORA ERYTHRAEA; SOURCE 3 ORGANISM_TAXID: 1836; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EF-HAND, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.TOSSAVAINEN,P.PERMI,A.ANNILA,I.KILPELAINEN,T.DRAKENBERG REVDAT 4 27-OCT-21 1NYA 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1NYA 1 VERSN REVDAT 2 27-JAN-04 1NYA 1 CRYST1 SCALE1 SCALE2 SCALE3 REVDAT 1 05-AUG-03 1NYA 0 JRNL AUTH H.TOSSAVAINEN,P.PERMI,A.ANNILA,I.KILPELAINEN,T.DRAKENBERG JRNL TITL NMR SOLUTION STRUCTURE OF CALERYTHRIN, AN EF-HAND JRNL TITL 2 CALCIUM-BINDING PROTEIN FROM SACCHAROPOLYSPORA ERYTHRAEA JRNL REF EUR.J.BIOCHEM. V. 270 2505 2003 JRNL REFN ISSN 0014-2956 JRNL PMID 12755706 JRNL DOI 10.1046/J.1432-1033.2003.03623.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.AITIO,A.ANNILA,S.HEIKKINEN,E.THULIN,T.DRAKENBERG, REMARK 1 AUTH 2 I.KILPELAINEN REMARK 1 TITL NMR ASSIGNMENTS, SECONDARY STRUCTURE, AND GLOBAL FOLD OF REMARK 1 TITL 2 CALERYTHRIN, AN EF-HAND CALCIUM-BINDING PROTEIN FROM REMARK 1 TITL 3 SACCHAROPOLYSPORA ERYTHRAEA REMARK 1 REF PROTEIN SCI. V. 8 2580 1999 REMARK 1 REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, X-PLOR 3.1 REMARK 3 AUTHORS : VARIAN INC (VNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NYA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018345. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318; 318 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CALERYTHRIN U-15N,13C; 1MM REMARK 210 CALERYTHRIN U-15N,13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; A/B-TROSY; REMARK 210 HNCO(A/B-COCA-J); HN(A/B-NCO-J)- REMARK 210 TROSY; A/B-HN(CO)CA-J REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97.0, SPARKY 3.1, NMRPIPE REMARK 210 2.2, X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 225 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 112 H ASP A 116 1.58 REMARK 500 O LYS A 31 H HIS A 35 1.59 REMARK 500 O PHE A 80 H THR A 84 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 -81.82 -153.97 REMARK 500 1 TRP A 16 -98.29 -97.45 REMARK 500 1 ASP A 17 73.94 39.71 REMARK 500 1 LYS A 42 -152.81 -148.30 REMARK 500 1 ASP A 43 -166.76 -68.80 REMARK 500 1 ALA A 44 -60.08 -140.32 REMARK 500 1 ALA A 46 -159.43 -71.24 REMARK 500 1 VAL A 69 -78.66 -115.99 REMARK 500 1 PHE A 89 -78.33 -90.13 REMARK 500 1 GLU A 90 -162.12 -57.32 REMARK 500 1 GLN A 91 147.64 66.88 REMARK 500 1 CYS A 111 43.95 -94.62 REMARK 500 1 ASP A 112 108.62 -166.56 REMARK 500 1 ALA A 115 61.44 65.67 REMARK 500 1 ASP A 146 78.65 -61.50 REMARK 500 1 VAL A 162 -73.60 -51.29 REMARK 500 1 ASP A 164 34.88 -171.12 REMARK 500 1 HIS A 166 -71.73 -47.31 REMARK 500 1 VAL A 172 23.92 81.93 REMARK 500 1 GLU A 173 -163.08 49.83 REMARK 500 2 ALA A 3 -79.85 -164.17 REMARK 500 2 TRP A 16 -98.38 -103.16 REMARK 500 2 ASP A 17 78.23 40.84 REMARK 500 2 ALA A 46 -164.01 -69.15 REMARK 500 2 PHE A 89 -78.29 -89.20 REMARK 500 2 GLU A 90 -158.53 -62.58 REMARK 500 2 GLN A 91 142.79 66.42 REMARK 500 2 CYS A 111 45.30 -93.48 REMARK 500 2 ASP A 112 107.91 -165.90 REMARK 500 2 ASP A 146 78.94 -62.15 REMARK 500 2 ARG A 163 66.19 -108.36 REMARK 500 2 HIS A 166 154.01 172.29 REMARK 500 2 PHE A 167 -84.68 59.63 REMARK 500 2 ARG A 169 -164.30 46.55 REMARK 500 2 LEU A 170 -82.16 -165.82 REMARK 500 2 ASP A 171 49.70 -169.81 REMARK 500 2 VAL A 172 -89.53 -109.31 REMARK 500 2 GLU A 173 -174.96 62.04 REMARK 500 3 THR A 2 -65.09 -123.04 REMARK 500 3 ALA A 3 170.94 -50.59 REMARK 500 3 TRP A 16 -93.84 -99.00 REMARK 500 3 ASP A 17 73.35 40.33 REMARK 500 3 ASP A 43 -158.53 38.64 REMARK 500 3 ALA A 44 -57.44 -139.67 REMARK 500 3 ALA A 46 -169.30 -69.89 REMARK 500 3 VAL A 69 -88.08 -111.38 REMARK 500 3 SER A 71 -27.75 110.57 REMARK 500 3 PHE A 89 -82.37 -91.37 REMARK 500 3 GLU A 90 -167.50 -56.35 REMARK 500 3 GLN A 91 -74.35 75.25 REMARK 500 REMARK 500 THIS ENTRY HAS 366 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD1 REMARK 620 2 ASP A 19 OD1 98.9 REMARK 620 3 ASN A 21 OD1 72.9 57.6 REMARK 620 4 ALA A 23 O 79.2 133.8 78.4 REMARK 620 5 ASP A 28 OD1 163.8 74.0 113.2 116.4 REMARK 620 6 ASP A 28 OD2 123.6 101.8 157.4 117.8 46.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD1 REMARK 620 2 ASP A 112 OD2 47.2 REMARK 620 3 ASN A 114 OD1 58.8 55.7 REMARK 620 4 ASN A 114 ND2 57.3 89.1 45.6 REMARK 620 5 ASP A 116 OD1 103.6 56.8 75.2 120.1 REMARK 620 6 ASP A 116 OD2 134.0 105.2 75.3 93.1 58.6 REMARK 620 7 GLN A 118 O 115.1 97.2 149.7 160.5 78.3 102.9 REMARK 620 8 GLU A 123 OE1 80.5 102.9 138.6 107.4 126.0 145.3 53.3 REMARK 620 9 GLU A 123 OE2 88.0 134.0 115.3 69.8 167.6 116.0 92.9 50.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 146 OD1 REMARK 620 2 ASN A 148 OD1 150.5 REMARK 620 3 ASN A 150 OD1 92.9 61.8 REMARK 620 4 GLU A 152 O 69.4 107.1 62.3 REMARK 620 5 GLU A 157 OE1 119.4 85.2 109.0 72.8 REMARK 620 6 GLU A 157 OE2 145.0 63.3 121.6 119.5 47.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 DBREF 1NYA A 1 176 UNP P06495 CBP_SACER 2 177 SEQADV 1NYA ILE A 107 UNP P06495 THR 108 ENGINEERED MUTATION SEQADV 1NYA VAL A 108 UNP P06495 TRP 109 ENGINEERED MUTATION SEQRES 1 A 176 THR THR ALA ILE ALA SER ASP ARG LEU LYS LYS ARG PHE SEQRES 2 A 176 ASP ARG TRP ASP PHE ASP GLY ASN GLY ALA LEU GLU ARG SEQRES 3 A 176 ALA ASP PHE GLU LYS GLU ALA GLN HIS ILE ALA GLU ALA SEQRES 4 A 176 PHE GLY LYS ASP ALA GLY ALA ALA GLU VAL GLN THR LEU SEQRES 5 A 176 LYS ASN ALA PHE GLY GLY LEU PHE ASP TYR LEU ALA LYS SEQRES 6 A 176 GLU ALA GLY VAL GLY SER ASP GLY SER LEU THR GLU GLU SEQRES 7 A 176 GLN PHE ILE ARG VAL THR GLU ASN LEU ILE PHE GLU GLN SEQRES 8 A 176 GLY GLU ALA SER PHE ASN ARG VAL LEU GLY PRO VAL VAL SEQRES 9 A 176 LYS GLY ILE VAL GLY MET CYS ASP LYS ASN ALA ASP GLY SEQRES 10 A 176 GLN ILE ASN ALA ASP GLU PHE ALA ALA TRP LEU THR ALA SEQRES 11 A 176 LEU GLY MET SER LYS ALA GLU ALA ALA GLU ALA PHE ASN SEQRES 12 A 176 GLN VAL ASP THR ASN GLY ASN GLY GLU LEU SER LEU ASP SEQRES 13 A 176 GLU LEU LEU THR ALA VAL ARG ASP PHE HIS PHE GLY ARG SEQRES 14 A 176 LEU ASP VAL GLU LEU LEU GLY HET CA A 500 1 HET CA A 501 1 HET CA A 502 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) HELIX 1 1 ALA A 3 TRP A 16 1 14 HELIX 2 2 ARG A 26 PHE A 40 1 15 HELIX 3 3 ALA A 46 GLY A 68 1 23 HELIX 4 4 THR A 76 PHE A 89 1 14 HELIX 5 5 GLY A 92 CYS A 111 1 20 HELIX 6 6 ALA A 121 LEU A 131 1 11 HELIX 7 7 SER A 134 ASP A 146 1 13 HELIX 8 8 LEU A 155 ARG A 163 1 9 SHEET 1 A 2 GLN A 118 ASN A 120 0 SHEET 2 A 2 GLU A 152 SER A 154 -1 O LEU A 153 N ILE A 119 LINK OD1 ASP A 17 CA CA A 500 1555 1555 2.84 LINK OD1 ASP A 19 CA CA A 500 1555 1555 2.81 LINK OD1 ASN A 21 CA CA A 500 1555 1555 2.25 LINK O ALA A 23 CA CA A 500 1555 1555 2.80 LINK OD1 ASP A 28 CA CA A 500 1555 1555 2.84 LINK OD2 ASP A 28 CA CA A 500 1555 1555 2.71 LINK OD1 ASP A 112 CA CA A 501 1555 1555 2.09 LINK OD2 ASP A 112 CA CA A 501 1555 1555 2.99 LINK OD1 ASN A 114 CA CA A 501 1555 1555 2.73 LINK ND2 ASN A 114 CA CA A 501 1555 1555 3.03 LINK OD1 ASP A 116 CA CA A 501 1555 1555 2.11 LINK OD2 ASP A 116 CA CA A 501 1555 1555 2.36 LINK O GLN A 118 CA CA A 501 1555 1555 2.74 LINK OE1 GLU A 123 CA CA A 501 1555 1555 2.75 LINK OE2 GLU A 123 CA CA A 501 1555 1555 2.26 LINK OD1 ASP A 146 CA CA A 502 1555 1555 2.29 LINK OD1 ASN A 148 CA CA A 502 1555 1555 2.21 LINK OD1 ASN A 150 CA CA A 502 1555 1555 2.79 LINK O GLU A 152 CA CA A 502 1555 1555 2.81 LINK OE1 GLU A 157 CA CA A 502 1555 1555 2.73 LINK OE2 GLU A 157 CA CA A 502 1555 1555 2.69 SITE 1 AC1 6 ASP A 17 PHE A 18 ASP A 19 ASN A 21 SITE 2 AC1 6 ALA A 23 ASP A 28 SITE 1 AC2 5 ASP A 112 ASN A 114 ASP A 116 GLN A 118 SITE 2 AC2 5 GLU A 123 SITE 1 AC3 6 ASP A 146 THR A 147 ASN A 148 ASN A 150 SITE 2 AC3 6 GLU A 152 GLU A 157 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1