data_1O06 # _entry.id 1O06 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O06 pdb_00001o06 10.2210/pdb1o06/pdb RCSB RCSB018409 ? ? WWPDB D_1000018409 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-22 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_struct_special_symmetry 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_alt_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 23 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_symmetry' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_symmetry' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1O06 _pdbx_database_status.recvd_initial_deposition_date 2003-02-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fisher, R.D.' 1 'Wang, B.' 2 'Alam, S.L.' 3 'Higginson, D.S.' 4 'Rich, R.' 5 'Myszka, D.' 6 'Sundquist, W.I.' 7 'Hill, C.P.' 8 # _citation.id primary _citation.title 'Structure and ubiquitin binding of the ubiquitin-interacting motif.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 278 _citation.page_first 28976 _citation.page_last 28984 _citation.year 2003 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12750381 _citation.pdbx_database_id_DOI 10.1074/jbc.M302596200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fisher, R.D.' 1 ? primary 'Wang, B.' 2 ? primary 'Alam, S.L.' 3 ? primary 'Higginson, D.S.' 4 ? primary 'Robinson, H.' 5 ? primary 'Sundquist, W.I.' 6 ? primary 'Hill, C.P.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Vacuolar protein sorting-associated protein VPS27' 2245.353 1 ? ? 'Residues 301-320' ? 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 water nat water 18.015 26 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code EEDPDLKAAIQESLREAEEA _entity_poly.pdbx_seq_one_letter_code_can EEDPDLKAAIQESLREAEEA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLU n 1 3 ASP n 1 4 PRO n 1 5 ASP n 1 6 LEU n 1 7 LYS n 1 8 ALA n 1 9 ALA n 1 10 ILE n 1 11 GLN n 1 12 GLU n 1 13 SER n 1 14 LEU n 1 15 ARG n 1 16 GLU n 1 17 ALA n 1 18 GLU n 1 19 GLU n 1 20 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in Saccharomyces cerevisiae Vps27p and was synthesized by standard peptide synthesis methods' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 101 101 ZN ZN A . C 2 ZN 1 102 102 ZN ZN A . D 2 ZN 1 103 103 ZN ZN A . E 3 HOH 1 201 201 HOH HOH A . E 3 HOH 2 202 202 HOH HOH A . E 3 HOH 3 203 203 HOH HOH A . E 3 HOH 4 204 204 HOH HOH A . E 3 HOH 5 205 205 HOH HOH A . E 3 HOH 6 206 206 HOH HOH A . E 3 HOH 7 207 207 HOH HOH A . E 3 HOH 8 208 208 HOH HOH A . E 3 HOH 9 209 209 HOH HOH A . E 3 HOH 10 210 210 HOH HOH A . E 3 HOH 11 211 211 HOH HOH A . E 3 HOH 12 212 212 HOH HOH A . E 3 HOH 13 213 213 HOH HOH A . E 3 HOH 14 214 214 HOH HOH A . E 3 HOH 15 215 215 HOH HOH A . E 3 HOH 16 216 216 HOH HOH A . E 3 HOH 17 217 217 HOH HOH A . E 3 HOH 18 218 218 HOH HOH A . E 3 HOH 19 219 219 HOH HOH A . E 3 HOH 20 220 220 HOH HOH A . E 3 HOH 21 221 221 HOH HOH A . E 3 HOH 22 222 222 HOH HOH A . E 3 HOH 23 223 223 HOH HOH A . E 3 HOH 24 224 224 HOH HOH A . E 3 HOH 25 225 225 HOH HOH A . E 3 HOH 26 226 226 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1O06 _cell.length_a 34.967 _cell.length_b 34.967 _cell.length_c 64.243 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O06 _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1O06 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.08M sodium cacodylate, 0.16M zinc acetate, 10.4% PEG-8000, 20% glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-01-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Yale mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1O06 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -2 _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 30 _reflns.number_all 4525 _reflns.number_obs 4525 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.034 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 94.2 _reflns_shell.Rmerge_I_obs 0.135 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1O06 _refine.ls_number_reflns_obs 4053 _refine.ls_number_reflns_all 4496 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.29 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 99.38 _refine.ls_R_factor_obs 0.18884 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18535 _refine.ls_R_factor_R_free 0.22388 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 443 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 12.368 _refine.aniso_B[1][1] 0.45 _refine.aniso_B[2][2] 0.45 _refine.aniso_B[3][3] -0.67 _refine.aniso_B[1][2] 0.22 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.070 _refine.pdbx_overall_ESU_R_Free 0.076 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 1.026 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 157 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 186 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 30.29 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 174 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 146 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.365 2.003 ? 236 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.733 3.000 ? 350 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.116 5.000 ? 23 'X-RAY DIFFRACTION' ? r_chiral_restr 0.051 0.200 ? 25 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 211 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 26 'X-RAY DIFFRACTION' ? r_nbd_refined 0.346 0.200 ? 49 'X-RAY DIFFRACTION' ? r_nbd_other 0.254 0.200 ? 177 'X-RAY DIFFRACTION' ? r_nbtor_other 0.087 0.200 ? 102 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.293 0.200 ? 20 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.205 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.341 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.142 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.280 0.200 ? 11 'X-RAY DIFFRACTION' ? r_mcbond_it 0.681 1.500 ? 113 'X-RAY DIFFRACTION' ? r_mcangle_it 1.340 2.000 ? 180 'X-RAY DIFFRACTION' ? r_scbond_it 2.418 3.000 ? 61 'X-RAY DIFFRACTION' ? r_scangle_it 4.260 4.500 ? 56 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.number_reflns_R_work 262 _refine_ls_shell.R_factor_R_work 0.248 _refine_ls_shell.percent_reflns_obs 94.2 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1O06 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1O06 _struct.title 'Crystal structure of the Vps27p Ubiquitin Interacting Motif (UIM)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1O06 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'alpha-helix, coiled-coil, tetramer, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VPS27_YEAST _struct_ref.pdbx_db_accession P40343 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EEDPDLKAAIQESLREAEEA _struct_ref.pdbx_align_begin 301 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O06 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P40343 _struct_ref_seq.db_align_beg 301 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 320 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1300 ? 2 MORE -75 ? 2 'SSA (A^2)' 3310 ? 3 'ABSA (A^2)' 530 ? 3 MORE -66 ? 3 'SSA (A^2)' 4080 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1,2 A,B,C,D,E 3 1,3 A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 60.5646205883 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 4_785 -x+2,-y+3,z -1.0000000000 0.0000000000 0.0000000000 17.4835000000 0.0000000000 -1.0000000000 0.0000000000 90.8469308824 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 3 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 19 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 3 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 19 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 1 N ? ? ? 1_555 D ZN . ZN B ? A GLU 1 A ZN 103 1_555 ? ? ? ? ? ? ? 2.536 ? ? metalc2 metalc ? ? A GLU 1 N ? ? ? 1_555 D ZN . ZN A ? A GLU 1 A ZN 103 1_555 ? ? ? ? ? ? ? 1.789 ? ? metalc3 metalc ? ? A ASP 3 OD2 ? ? ? 12_575 B ZN . ZN ? ? A ASP 3 A ZN 101 1_555 ? ? ? ? ? ? ? 1.906 ? ? metalc4 metalc ? ? A ASP 5 OD2 ? ? ? 1_555 B ZN . ZN ? ? A ASP 5 A ZN 101 1_555 ? ? ? ? ? ? ? 1.916 ? ? metalc5 metalc ? ? A ASP 5 OD1 ? ? ? 1_555 B ZN . ZN ? ? A ASP 5 A ZN 101 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc6 metalc ? ? A ASP 5 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 5 A ZN 102 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc7 metalc ? ? A ASP 5 OD2 ? ? ? 12_575 C ZN . ZN ? ? A ASP 5 A ZN 102 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc8 metalc ? ? A GLU 16 OE1 ? ? ? 9_665 B ZN . ZN ? ? A GLU 16 A ZN 101 1_555 ? ? ? ? ? ? ? 1.961 ? ? metalc9 metalc ? ? A GLU 16 OE2 ? ? ? 9_665 C ZN . ZN ? ? A GLU 16 A ZN 102 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc10 metalc ? ? A GLU 16 OE2 ? ? ? 4_675 C ZN . ZN ? ? A GLU 16 A ZN 102 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc11 metalc ? ? A GLU 18 OE1 ? ? ? 11_665 D ZN . ZN B ? A GLU 18 A ZN 103 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc12 metalc ? ? A GLU 18 OE1 ? ? ? 11_665 D ZN . ZN A ? A GLU 18 A ZN 103 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc13 metalc ? ? A GLU 19 OE1 ? ? ? 9_665 B ZN . ZN ? ? A GLU 19 A ZN 101 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc14 metalc ? ? A ALA 20 OXT ? ? ? 8_675 D ZN . ZN B ? A ALA 20 A ZN 103 1_555 ? ? ? ? ? ? ? 1.771 ? ? metalc15 metalc ? ? A ALA 20 O ? ? ? 8_675 D ZN . ZN B ? A ALA 20 A ZN 103 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc16 metalc ? ? A ALA 20 OXT ? ? ? 8_675 D ZN . ZN A ? A ALA 20 A ZN 103 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc17 metalc ? ? C ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 102 A HOH 205 4_675 ? ? ? ? ? ? ? 2.241 ? ? metalc18 metalc ? ? C ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 102 A HOH 205 9_665 ? ? ? ? ? ? ? 2.511 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A GLU 1 ? A GLU 1 ? 1_555 ZN B D ZN . ? A ZN 103 ? 1_555 OE1 ? A GLU 18 ? A GLU 18 ? 11_665 84.6 ? 2 N ? A GLU 1 ? A GLU 1 ? 1_555 ZN B D ZN . ? A ZN 103 ? 1_555 OXT ? A ALA 20 ? A ALA 20 ? 8_675 84.7 ? 3 OE1 ? A GLU 18 ? A GLU 18 ? 11_665 ZN B D ZN . ? A ZN 103 ? 1_555 OXT ? A ALA 20 ? A ALA 20 ? 8_675 110.7 ? 4 N ? A GLU 1 ? A GLU 1 ? 1_555 ZN B D ZN . ? A ZN 103 ? 1_555 O ? A ALA 20 ? A ALA 20 ? 8_675 143.8 ? 5 OE1 ? A GLU 18 ? A GLU 18 ? 11_665 ZN B D ZN . ? A ZN 103 ? 1_555 O ? A ALA 20 ? A ALA 20 ? 8_675 122.2 ? 6 OXT ? A ALA 20 ? A ALA 20 ? 8_675 ZN B D ZN . ? A ZN 103 ? 1_555 O ? A ALA 20 ? A ALA 20 ? 8_675 64.2 ? 7 N ? A GLU 1 ? A GLU 1 ? 1_555 ZN A D ZN . ? A ZN 103 ? 1_555 OE1 ? A GLU 18 ? A GLU 18 ? 11_665 115.2 ? 8 N ? A GLU 1 ? A GLU 1 ? 1_555 ZN A D ZN . ? A ZN 103 ? 1_555 OXT ? A ALA 20 ? A ALA 20 ? 8_675 96.5 ? 9 OE1 ? A GLU 18 ? A GLU 18 ? 11_665 ZN A D ZN . ? A ZN 103 ? 1_555 OXT ? A ALA 20 ? A ALA 20 ? 8_675 106.2 ? 10 OD2 ? A ASP 3 ? A ASP 3 ? 12_575 ZN ? B ZN . ? A ZN 101 ? 1_555 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 129.2 ? 11 OD2 ? A ASP 3 ? A ASP 3 ? 12_575 ZN ? B ZN . ? A ZN 101 ? 1_555 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 91.0 ? 12 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 51.1 ? 13 OD2 ? A ASP 3 ? A ASP 3 ? 12_575 ZN ? B ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 16 ? A GLU 16 ? 9_665 96.4 ? 14 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 16 ? A GLU 16 ? 9_665 109.2 ? 15 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 16 ? A GLU 16 ? 9_665 157.3 ? 16 OD2 ? A ASP 3 ? A ASP 3 ? 12_575 ZN ? B ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 19 ? A GLU 19 ? 9_665 96.8 ? 17 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 19 ? A GLU 19 ? 9_665 116.0 ? 18 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 19 ? A GLU 19 ? 9_665 94.5 ? 19 OE1 ? A GLU 16 ? A GLU 16 ? 9_665 ZN ? B ZN . ? A ZN 101 ? 1_555 OE1 ? A GLU 19 ? A GLU 19 ? 9_665 105.8 ? 20 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OD2 ? A ASP 5 ? A ASP 5 ? 12_575 82.3 ? 21 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OE2 ? A GLU 16 ? A GLU 16 ? 9_665 91.4 ? 22 OD2 ? A ASP 5 ? A ASP 5 ? 12_575 ZN ? C ZN . ? A ZN 102 ? 1_555 OE2 ? A GLU 16 ? A GLU 16 ? 9_665 113.9 ? 23 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OE2 ? A GLU 16 ? A GLU 16 ? 4_675 116.5 ? 24 OD2 ? A ASP 5 ? A ASP 5 ? 12_575 ZN ? C ZN . ? A ZN 102 ? 1_555 OE2 ? A GLU 16 ? A GLU 16 ? 4_675 81.1 ? 25 OE2 ? A GLU 16 ? A GLU 16 ? 9_665 ZN ? C ZN . ? A ZN 102 ? 1_555 OE2 ? A GLU 16 ? A GLU 16 ? 4_675 150.5 ? 26 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 4_675 85.6 ? 27 OD2 ? A ASP 5 ? A ASP 5 ? 12_575 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 4_675 148.2 ? 28 OE2 ? A GLU 16 ? A GLU 16 ? 9_665 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 4_675 95.7 ? 29 OE2 ? A GLU 16 ? A GLU 16 ? 4_675 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 4_675 78.3 ? 30 OD2 ? A ASP 5 ? A ASP 5 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 9_665 146.8 ? 31 OD2 ? A ASP 5 ? A ASP 5 ? 12_575 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 9_665 75.1 ? 32 OE2 ? A GLU 16 ? A GLU 16 ? 9_665 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 9_665 76.2 ? 33 OE2 ? A GLU 16 ? A GLU 16 ? 4_675 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 9_665 84.0 ? 34 O ? E HOH . ? A HOH 205 ? 4_675 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 205 ? 9_665 125.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 101 ? 5 'BINDING SITE FOR RESIDUE ZN A 101' AC2 Software A ZN 102 ? 7 'BINDING SITE FOR RESIDUE ZN A 102' AC3 Software A ZN 103 ? 3 'BINDING SITE FOR RESIDUE ZN A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 3 ? ASP A 3 . ? 12_575 ? 2 AC1 5 ASP A 5 ? ASP A 5 . ? 1_555 ? 3 AC1 5 GLU A 16 ? GLU A 16 . ? 9_665 ? 4 AC1 5 GLU A 19 ? GLU A 19 . ? 9_665 ? 5 AC1 5 ZN C . ? ZN A 102 . ? 1_555 ? 6 AC2 7 ASP A 5 ? ASP A 5 . ? 12_575 ? 7 AC2 7 ASP A 5 ? ASP A 5 . ? 1_555 ? 8 AC2 7 GLU A 16 ? GLU A 16 . ? 4_675 ? 9 AC2 7 GLU A 16 ? GLU A 16 . ? 9_665 ? 10 AC2 7 ZN B . ? ZN A 101 . ? 1_555 ? 11 AC2 7 HOH E . ? HOH A 205 . ? 9_665 ? 12 AC2 7 HOH E . ? HOH A 205 . ? 4_675 ? 13 AC3 3 GLU A 1 ? GLU A 1 . ? 1_555 ? 14 AC3 3 GLU A 18 ? GLU A 18 . ? 11_665 ? 15 AC3 3 ALA A 20 ? ALA A 20 . ? 8_675 ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id ZN _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id ZN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 GLU N N N N 77 GLU CA C N S 78 GLU C C N N 79 GLU O O N N 80 GLU CB C N N 81 GLU CG C N N 82 GLU CD C N N 83 GLU OE1 O N N 84 GLU OE2 O N N 85 GLU OXT O N N 86 GLU H H N N 87 GLU H2 H N N 88 GLU HA H N N 89 GLU HB2 H N N 90 GLU HB3 H N N 91 GLU HG2 H N N 92 GLU HG3 H N N 93 GLU HE2 H N N 94 GLU HXT H N N 95 HOH O O N N 96 HOH H1 H N N 97 HOH H2 H N N 98 ILE N N N N 99 ILE CA C N S 100 ILE C C N N 101 ILE O O N N 102 ILE CB C N S 103 ILE CG1 C N N 104 ILE CG2 C N N 105 ILE CD1 C N N 106 ILE OXT O N N 107 ILE H H N N 108 ILE H2 H N N 109 ILE HA H N N 110 ILE HB H N N 111 ILE HG12 H N N 112 ILE HG13 H N N 113 ILE HG21 H N N 114 ILE HG22 H N N 115 ILE HG23 H N N 116 ILE HD11 H N N 117 ILE HD12 H N N 118 ILE HD13 H N N 119 ILE HXT H N N 120 LEU N N N N 121 LEU CA C N S 122 LEU C C N N 123 LEU O O N N 124 LEU CB C N N 125 LEU CG C N N 126 LEU CD1 C N N 127 LEU CD2 C N N 128 LEU OXT O N N 129 LEU H H N N 130 LEU H2 H N N 131 LEU HA H N N 132 LEU HB2 H N N 133 LEU HB3 H N N 134 LEU HG H N N 135 LEU HD11 H N N 136 LEU HD12 H N N 137 LEU HD13 H N N 138 LEU HD21 H N N 139 LEU HD22 H N N 140 LEU HD23 H N N 141 LEU HXT H N N 142 LYS N N N N 143 LYS CA C N S 144 LYS C C N N 145 LYS O O N N 146 LYS CB C N N 147 LYS CG C N N 148 LYS CD C N N 149 LYS CE C N N 150 LYS NZ N N N 151 LYS OXT O N N 152 LYS H H N N 153 LYS H2 H N N 154 LYS HA H N N 155 LYS HB2 H N N 156 LYS HB3 H N N 157 LYS HG2 H N N 158 LYS HG3 H N N 159 LYS HD2 H N N 160 LYS HD3 H N N 161 LYS HE2 H N N 162 LYS HE3 H N N 163 LYS HZ1 H N N 164 LYS HZ2 H N N 165 LYS HZ3 H N N 166 LYS HXT H N N 167 PRO N N N N 168 PRO CA C N S 169 PRO C C N N 170 PRO O O N N 171 PRO CB C N N 172 PRO CG C N N 173 PRO CD C N N 174 PRO OXT O N N 175 PRO H H N N 176 PRO HA H N N 177 PRO HB2 H N N 178 PRO HB3 H N N 179 PRO HG2 H N N 180 PRO HG3 H N N 181 PRO HD2 H N N 182 PRO HD3 H N N 183 PRO HXT H N N 184 SER N N N N 185 SER CA C N S 186 SER C C N N 187 SER O O N N 188 SER CB C N N 189 SER OG O N N 190 SER OXT O N N 191 SER H H N N 192 SER H2 H N N 193 SER HA H N N 194 SER HB2 H N N 195 SER HB3 H N N 196 SER HG H N N 197 SER HXT H N N 198 ZN ZN ZN N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLU N CA sing N N 73 GLU N H sing N N 74 GLU N H2 sing N N 75 GLU CA C sing N N 76 GLU CA CB sing N N 77 GLU CA HA sing N N 78 GLU C O doub N N 79 GLU C OXT sing N N 80 GLU CB CG sing N N 81 GLU CB HB2 sing N N 82 GLU CB HB3 sing N N 83 GLU CG CD sing N N 84 GLU CG HG2 sing N N 85 GLU CG HG3 sing N N 86 GLU CD OE1 doub N N 87 GLU CD OE2 sing N N 88 GLU OE2 HE2 sing N N 89 GLU OXT HXT sing N N 90 HOH O H1 sing N N 91 HOH O H2 sing N N 92 ILE N CA sing N N 93 ILE N H sing N N 94 ILE N H2 sing N N 95 ILE CA C sing N N 96 ILE CA CB sing N N 97 ILE CA HA sing N N 98 ILE C O doub N N 99 ILE C OXT sing N N 100 ILE CB CG1 sing N N 101 ILE CB CG2 sing N N 102 ILE CB HB sing N N 103 ILE CG1 CD1 sing N N 104 ILE CG1 HG12 sing N N 105 ILE CG1 HG13 sing N N 106 ILE CG2 HG21 sing N N 107 ILE CG2 HG22 sing N N 108 ILE CG2 HG23 sing N N 109 ILE CD1 HD11 sing N N 110 ILE CD1 HD12 sing N N 111 ILE CD1 HD13 sing N N 112 ILE OXT HXT sing N N 113 LEU N CA sing N N 114 LEU N H sing N N 115 LEU N H2 sing N N 116 LEU CA C sing N N 117 LEU CA CB sing N N 118 LEU CA HA sing N N 119 LEU C O doub N N 120 LEU C OXT sing N N 121 LEU CB CG sing N N 122 LEU CB HB2 sing N N 123 LEU CB HB3 sing N N 124 LEU CG CD1 sing N N 125 LEU CG CD2 sing N N 126 LEU CG HG sing N N 127 LEU CD1 HD11 sing N N 128 LEU CD1 HD12 sing N N 129 LEU CD1 HD13 sing N N 130 LEU CD2 HD21 sing N N 131 LEU CD2 HD22 sing N N 132 LEU CD2 HD23 sing N N 133 LEU OXT HXT sing N N 134 LYS N CA sing N N 135 LYS N H sing N N 136 LYS N H2 sing N N 137 LYS CA C sing N N 138 LYS CA CB sing N N 139 LYS CA HA sing N N 140 LYS C O doub N N 141 LYS C OXT sing N N 142 LYS CB CG sing N N 143 LYS CB HB2 sing N N 144 LYS CB HB3 sing N N 145 LYS CG CD sing N N 146 LYS CG HG2 sing N N 147 LYS CG HG3 sing N N 148 LYS CD CE sing N N 149 LYS CD HD2 sing N N 150 LYS CD HD3 sing N N 151 LYS CE NZ sing N N 152 LYS CE HE2 sing N N 153 LYS CE HE3 sing N N 154 LYS NZ HZ1 sing N N 155 LYS NZ HZ2 sing N N 156 LYS NZ HZ3 sing N N 157 LYS OXT HXT sing N N 158 PRO N CA sing N N 159 PRO N CD sing N N 160 PRO N H sing N N 161 PRO CA C sing N N 162 PRO CA CB sing N N 163 PRO CA HA sing N N 164 PRO C O doub N N 165 PRO C OXT sing N N 166 PRO CB CG sing N N 167 PRO CB HB2 sing N N 168 PRO CB HB3 sing N N 169 PRO CG CD sing N N 170 PRO CG HG2 sing N N 171 PRO CG HG3 sing N N 172 PRO CD HD2 sing N N 173 PRO CD HD3 sing N N 174 PRO OXT HXT sing N N 175 SER N CA sing N N 176 SER N H sing N N 177 SER N H2 sing N N 178 SER CA C sing N N 179 SER CA CB sing N N 180 SER CA HA sing N N 181 SER C O doub N N 182 SER C OXT sing N N 183 SER CB OG sing N N 184 SER CB HB2 sing N N 185 SER CB HB3 sing N N 186 SER OG HG sing N N 187 SER OXT HXT sing N N 188 # _atom_sites.entry_id 1O06 _atom_sites.fract_transf_matrix[1][1] 0.028598 _atom_sites.fract_transf_matrix[1][2] 0.016511 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033023 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015566 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O ZN # loop_