HEADER LIGASE/RNA 20-FEB-03 1O0C TITLE CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE TITLE 2 AMINOACYL TRNA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINYL TRNA; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: TRNA(GLN); TRANSFER RNA-GLN II; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLUTAMINYL-TRNA SYNTHETASE; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: GLUTAMINE--TRNA LIGASE; GLUTAMINE TRNA SYNTHETASE; GLNRS; COMPND 11 EC: 6.1.1.18; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: COMPLEXED WITH AMPCPP, SEE REMARK 600 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PRODUCT OF RUNOFF T7 POLYMERASE TRANSCRIPTION FROM A SOURCE 4 DOUBLE HELICAL DNA TEMPLATE; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 GENE: GLNS; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21-DE3 (PLYSS); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PSJW1 KEYWDS ENGINEERED TRNA, TRNA-PROTEIN COMPLEX, AMINO ACID SPECIFICITY, KEYWDS 2 LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.L.BULLOCK,J.J.PERONA REVDAT 6 14-FEB-24 1O0C 1 REMARK REVDAT 5 27-OCT-21 1O0C 1 REMARK SEQADV REVDAT 4 21-JAN-15 1O0C 1 REMARK VERSN REVDAT 3 24-FEB-09 1O0C 1 VERSN REVDAT 2 09-SEP-03 1O0C 1 DBREF SEQADV REMARK REVDAT 1 15-APR-03 1O0C 0 JRNL AUTH T.L.BULLOCK,N.UTER,T.A.NISSAN,J.J.PERONA JRNL TITL AMINO ACID DISCRIMINATION BY A CLASS I AMINOACYL-TRNA JRNL TITL 2 SYNTHETASE SPECIFIED BY NEGATIVE DETERMINANTS JRNL REF J.MOL.BIOL. V. 328 395 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12691748 JRNL DOI 10.1016/S0022-2836(03)00305-X REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2292 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4279 REMARK 3 NUCLEIC ACID ATOMS : 1570 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.540 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : UCSD MARK II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 7.00, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.04000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.04000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 120.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 120.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.04000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 120.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.29000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.04000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 120.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.29000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U B 901 REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ASP A 445 REMARK 465 PRO A 446 REMARK 465 ALA A 447 REMARK 465 ASP A 448 REMARK 465 GLY A 449 REMARK 465 ARG A 450 REMARK 465 LYS A 451 REMARK 465 VAL A 452 REMARK 465 LYS A 453 REMARK 465 TRP A 548 REMARK 465 ALA A 549 REMARK 465 LYS A 550 REMARK 465 VAL A 551 REMARK 465 GLY A 552 REMARK 465 GLU A 553 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G B 902 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 918 N9 - C1' - C2' ANGL. DEV. = 8.4 DEGREES REMARK 500 G B 919 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 G B 936 N9 - C1' - C2' ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 32 60.96 -111.55 REMARK 500 ILE A 176 -103.42 -115.42 REMARK 500 HIS A 199 -9.89 -57.22 REMARK 500 LYS A 371 74.74 -153.72 REMARK 500 SER A 382 -179.37 -171.13 REMARK 500 ALA A 390 -7.54 -58.24 REMARK 500 ALA A 396 153.99 100.10 REMARK 500 ASN A 397 173.69 -26.35 REMARK 500 LEU A 405 16.92 -58.17 REMARK 500 ALA A 414 -140.05 -134.99 REMARK 500 GLU A 420 -45.95 -142.49 REMARK 500 ASP A 425 -159.12 -125.35 REMARK 500 ALA A 439 -35.90 -33.24 REMARK 500 GLU A 521 -72.08 -125.30 REMARK 500 ASP A 527 -94.58 85.99 REMARK 500 ARG A 529 -1.29 69.40 REMARK 500 SER A 531 110.95 -37.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G B 919 0.08 SIDE CHAIN REMARK 500 U B 935 0.07 SIDE CHAIN REMARK 500 C B 948 0.06 SIDE CHAIN REMARK 500 U B 960 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 998 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O0B RELATED DB: PDB REMARK 900 L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINYL-TRNA SYNTHETASE REMARK 900 RELATED ID: 1QTQ RELATED DB: PDB DBREF 1O0C A 1 553 UNP P00962 SYQ_ECOLI 1 553 DBREF 1O0C B 901 976 EMBL 43058 X68629 1 75 SEQADV 1O0C MET A 0 UNP P00962 CLONING ARTIFACT SEQADV 1O0C U B 901 EMBL 43058 G 1 ENGINEERED MUTATION SEQRES 1 B 75 U G G G G U A U C G C C A SEQRES 2 B 75 A G C G G U A A G G C A C SEQRES 3 B 75 C G G A U U C U G A U U C SEQRES 4 B 75 C G G C A U U C C G A G G SEQRES 5 B 75 U U C G A A U C C U C G U SEQRES 6 B 75 A C C C C A G C C A SEQRES 1 A 554 MET SER GLU ALA GLU ALA ARG PRO THR ASN PHE ILE ARG SEQRES 2 A 554 GLN ILE ILE ASP GLU ASP LEU ALA SER GLY LYS HIS THR SEQRES 3 A 554 THR VAL HIS THR ARG PHE PRO PRO GLU PRO ASN GLY TYR SEQRES 4 A 554 LEU HIS ILE GLY HIS ALA LYS SER ILE CYS LEU ASN PHE SEQRES 5 A 554 GLY ILE ALA GLN ASP TYR LYS GLY GLN CYS ASN LEU ARG SEQRES 6 A 554 PHE ASP ASP THR ASN PRO VAL LYS GLU ASP ILE GLU TYR SEQRES 7 A 554 VAL GLU SER ILE LYS ASN ASP VAL GLU TRP LEU GLY PHE SEQRES 8 A 554 HIS TRP SER GLY ASN VAL ARG TYR SER SER ASP TYR PHE SEQRES 9 A 554 ASP GLN LEU HIS ALA TYR ALA ILE GLU LEU ILE ASN LYS SEQRES 10 A 554 GLY LEU ALA TYR VAL ASP GLU LEU THR PRO GLU GLN ILE SEQRES 11 A 554 ARG GLU TYR ARG GLY THR LEU THR GLN PRO GLY LYS ASN SEQRES 12 A 554 SER PRO TYR ARG ASP ARG SER VAL GLU GLU ASN LEU ALA SEQRES 13 A 554 LEU PHE GLU LYS MET ARG ALA GLY GLY PHE GLU GLU GLY SEQRES 14 A 554 LYS ALA CYS LEU ARG ALA LYS ILE ASP MET ALA SER PRO SEQRES 15 A 554 PHE ILE VAL MET ARG ASP PRO VAL LEU TYR ARG ILE LYS SEQRES 16 A 554 PHE ALA GLU HIS HIS GLN THR GLY ASN LYS TRP CYS ILE SEQRES 17 A 554 TYR PRO MET TYR ASP PHE THR HIS CYS ILE SER ASP ALA SEQRES 18 A 554 LEU GLU GLY ILE THR HIS SER LEU CYS THR LEU GLU PHE SEQRES 19 A 554 GLN ASP ASN ARG ARG LEU TYR ASP TRP VAL LEU ASP ASN SEQRES 20 A 554 ILE THR ILE PRO VAL HIS PRO ARG GLN TYR GLU PHE SER SEQRES 21 A 554 ARG LEU ASN LEU GLU TYR THR VAL MET SER LYS ARG LYS SEQRES 22 A 554 LEU ASN LEU LEU VAL THR ASP LYS HIS VAL GLU GLY TRP SEQRES 23 A 554 ASP ASP PRO ARG MET PRO THR ILE SER GLY LEU ARG ARG SEQRES 24 A 554 ARG GLY TYR THR ALA ALA SER ILE ARG GLU PHE CYS LYS SEQRES 25 A 554 ARG ILE GLY VAL THR LYS GLN ASP ASN THR ILE GLU MET SEQRES 26 A 554 ALA SER LEU GLU SER CYS ILE ARG GLU ASP LEU ASN GLU SEQRES 27 A 554 ASN ALA PRO ARG ALA MET ALA VAL ILE ASP PRO VAL LYS SEQRES 28 A 554 LEU VAL ILE GLU ASN TYR GLN GLY GLU GLY GLU MET VAL SEQRES 29 A 554 THR MET PRO ASN HIS PRO ASN LYS PRO GLU MET GLY SER SEQRES 30 A 554 ARG GLN VAL PRO PHE SER GLY GLU ILE TRP ILE ASP ARG SEQRES 31 A 554 ALA ASP PHE ARG GLU GLU ALA ASN LYS GLN TYR LYS ARG SEQRES 32 A 554 LEU VAL LEU GLY LYS GLU VAL ARG LEU ARG ASN ALA TYR SEQRES 33 A 554 VAL ILE LYS ALA GLU ARG VAL GLU LYS ASP ALA GLU GLY SEQRES 34 A 554 ASN ILE THR THR ILE PHE CYS THR TYR ASP ALA ASP THR SEQRES 35 A 554 LEU SER LYS ASP PRO ALA ASP GLY ARG LYS VAL LYS GLY SEQRES 36 A 554 VAL ILE HIS TRP VAL SER ALA ALA HIS ALA LEU PRO VAL SEQRES 37 A 554 GLU ILE ARG LEU TYR ASP ARG LEU PHE SER VAL PRO ASN SEQRES 38 A 554 PRO GLY ALA ALA ASP ASP PHE LEU SER VAL ILE ASN PRO SEQRES 39 A 554 GLU SER LEU VAL ILE LYS GLN GLY PHE ALA GLU PRO SER SEQRES 40 A 554 LEU LYS ASP ALA VAL ALA GLY LYS ALA PHE GLN PHE GLU SEQRES 41 A 554 ARG GLU GLY TYR PHE CYS LEU ASP SER ARG HIS SER THR SEQRES 42 A 554 ALA GLU LYS PRO VAL PHE ASN ARG THR VAL GLY LEU ARG SEQRES 43 A 554 ASP THR TRP ALA LYS VAL GLY GLU HET SO4 A1394 5 HET SO4 A1395 5 HET GLU A 996 10 HET AMP A 998 23 HETNAM SO4 SULFATE ION HETNAM GLU GLUTAMIC ACID HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GLU C5 H9 N O4 FORMUL 6 AMP C10 H14 N5 O7 P FORMUL 7 HOH *144(H2 O) HELIX 1 1 ASN A 9 GLY A 22 1 14 HELIX 2 2 HIS A 40 TYR A 57 1 18 HELIX 3 3 ASN A 69 GLU A 73 5 5 HELIX 4 4 ASP A 74 GLY A 89 1 16 HELIX 5 5 TYR A 102 LYS A 116 1 15 HELIX 6 6 THR A 125 ARG A 133 1 9 HELIX 7 7 SER A 149 ALA A 162 1 14 HELIX 8 8 PHE A 182 ARG A 186 5 5 HELIX 9 9 MET A 210 GLY A 223 1 14 HELIX 10 10 GLU A 232 ASP A 235 5 4 HELIX 11 11 ASN A 236 ASN A 246 1 11 HELIX 12 12 SER A 269 ASP A 279 1 11 HELIX 13 13 THR A 292 GLY A 300 1 9 HELIX 14 14 THR A 302 GLY A 314 1 13 HELIX 15 15 GLU A 323 ALA A 339 1 17 HELIX 16 16 LYS A 371 MET A 374 5 4 HELIX 17 17 ASN A 480 ALA A 484 5 5 HELIX 18 18 ASP A 486 ILE A 491 5 6 HELIX 19 19 PRO A 505 ALA A 510 5 6 SHEET 1 A 3 HIS A 28 PHE A 31 0 SHEET 2 A 3 GLN A 60 PHE A 65 1 O ASN A 62 N PHE A 31 SHEET 3 A 3 ARG A 97 TYR A 98 1 O ARG A 97 N PHE A 65 SHEET 1 B 4 ALA A 119 ASP A 122 0 SHEET 2 B 4 CYS A 171 ALA A 174 -1 O ARG A 173 N TYR A 120 SHEET 3 B 4 VAL A 189 ILE A 193 -1 O LEU A 190 N LEU A 172 SHEET 4 B 4 ILE A 207 PRO A 209 -1 O TYR A 208 N ARG A 192 SHEET 1 C 2 HIS A 226 THR A 230 0 SHEET 2 C 2 ARG A 254 PHE A 258 1 O PHE A 258 N CYS A 229 SHEET 1 D 7 ARG A 341 ALA A 342 0 SHEET 2 D 7 ALA A 515 PHE A 518 1 O GLN A 517 N ALA A 342 SHEET 3 D 7 GLY A 522 CYS A 525 -1 O GLY A 522 N PHE A 518 SHEET 4 D 7 VAL A 537 GLY A 543 -1 O ASN A 539 N CYS A 525 SHEET 5 D 7 LEU A 465 TYR A 472 1 N ARG A 470 O PHE A 538 SHEET 6 D 7 LEU A 496 ALA A 503 -1 O LYS A 499 N ILE A 469 SHEET 7 D 7 ALA A 344 VAL A 345 -1 N VAL A 345 O PHE A 502 SHEET 1 E 7 VAL A 455 ILE A 456 0 SHEET 2 E 7 GLU A 408 LEU A 411 1 N ARG A 410 O ILE A 456 SHEET 3 E 7 VAL A 416 LYS A 424 -1 O ILE A 417 N VAL A 409 SHEET 4 E 7 ILE A 430 TYR A 437 -1 O THR A 431 N GLU A 423 SHEET 5 E 7 PRO A 348 ILE A 353 1 N VAL A 352 O CYS A 435 SHEET 6 E 7 GLU A 384 ASP A 388 -1 O ILE A 385 N LEU A 351 SHEET 7 E 7 VAL A 459 SER A 460 -1 O VAL A 459 N TRP A 386 SHEET 1 F 2 GLU A 361 PRO A 366 0 SHEET 2 F 2 SER A 376 PHE A 381 -1 O VAL A 379 N VAL A 363 SHEET 1 G 2 PHE A 392 ARG A 393 0 SHEET 2 G 2 LEU A 403 VAL A 404 1 O LEU A 403 N ARG A 393 SITE 1 AC1 6 HIS A 40 HIS A 43 ARG A 260 MET A 268 SITE 2 AC1 6 LYS A 270 AMP A 998 SITE 1 AC2 5 VAL A 267 MET A 268 SER A 269 LYS A 272 SITE 2 AC2 5 GLY A 482 SITE 1 AC3 13 ARG A 30 PRO A 32 ASP A 66 TYR A 211 SITE 2 AC3 13 HIS A 215 LEU A 228 CYS A 229 PHE A 233 SITE 3 AC3 13 AMP A 998 HOH A1396 HOH A1475 HOH A1479 SITE 4 AC3 13 A B 976 SITE 1 AC4 16 PHE A 31 PRO A 33 GLU A 34 HIS A 40 SITE 2 AC4 16 GLY A 42 HIS A 43 SER A 46 ARG A 260 SITE 3 AC4 16 LEU A 261 LYS A 270 GLU A 996 SO4 A1394 SITE 4 AC4 16 HOH A1445 HOH A1475 HOH A1479 A B 976 CRYST1 241.100 94.580 116.080 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008615 0.00000