HEADER OXIDOREDUCTASE 12-FEB-03 1O20 TITLE CRYSTAL STRUCTURE OF GAMMA-GLUTAMYL PHOSPHATE REDUCTASE (TM0293) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYL PHOSPHATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPR, GLUTAMATE-5-SEMIALDEHYDE DEHYDROGENASE, GLUTAMYL-GAMMA- COMPND 5 SEMIALDEHYDE DEHYDROGENASE, GSA DEHYDROGENASE; COMPND 6 EC: 1.2.1.41; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0293; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0293, GAMMA-GLUTAMYL PHOSPHATE REDUCTASE, STRUCTURAL GENOMICS, KEYWDS 2 JCSG, PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 10 13-NOV-24 1O20 1 REMARK REVDAT 9 25-JAN-23 1O20 1 SEQADV LINK REVDAT 8 18-JUL-18 1O20 1 REMARK REVDAT 7 04-OCT-17 1O20 1 REMARK REVDAT 6 13-JUL-11 1O20 1 VERSN REVDAT 5 24-FEB-09 1O20 1 VERSN REVDAT 4 18-JAN-05 1O20 1 AUTHOR KEYWDS REMARK REVDAT 3 27-JAN-04 1O20 1 JRNL REVDAT 2 22-JUL-03 1O20 1 REMARK REVDAT 1 01-APR-03 1O20 0 JRNL AUTH R.PAGE,M.S.NELSON,F.VON DELFT,M.A.ELSLIGER,J.M.CANAVES, JRNL AUTH 2 L.S.BRINEN,X.DAI,A.M.DEACON,R.FLOYD,A.GODZIK,C.GRITTINI, JRNL AUTH 3 S.K.GRZECHNIK,L.JAROSZEWSKI,H.E.KLOCK,E.KOESEMA,J.S.KOVARIK, JRNL AUTH 4 A.KREUSCH,P.KUHN,S.A.LESLEY,D.MCMULLAN,T.M.MCPHILLIPS, JRNL AUTH 5 M.D.MILLER,A.MORSE,K.MOY,J.OUYANG,A.ROBB,K.RODRIGUES, JRNL AUTH 6 R.SCHWARZENBACHER,G.SPRAGGON,R.C.STEVENS,H.VAN DEN BEDEM, JRNL AUTH 7 J.VELASQUEZ,J.VINCENT,X.WANG,B.WEST,G.WOLF,K.O.HODGSON, JRNL AUTH 8 J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF GAMMA-GLUTAMYL PHOSPHATE REDUCTASE JRNL TITL 2 (TM0293) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION. JRNL REF PROTEINS V. 54 157 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 14705032 JRNL DOI 10.1002/PROT.10562 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 30837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3284 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3136 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4440 ; 1.532 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7269 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 6.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3618 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 663 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3606 ; 0.244 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2063 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 229 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 128 ; 0.357 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.337 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2059 ; 0.816 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3342 ; 1.490 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 2.550 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 4.321 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 415 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6053 41.9533 67.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0532 REMARK 3 T33: 0.0414 T12: 0.0661 REMARK 3 T13: 0.0074 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.7329 L22: 0.1585 REMARK 3 L33: 0.0234 L12: 0.0216 REMARK 3 L13: 0.0953 L23: 0.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.1486 S13: -0.1057 REMARK 3 S21: -0.0841 S22: -0.0370 S23: -0.0131 REMARK 3 S31: 0.0402 S32: 0.0096 S33: 0.0069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS PROMINENT DIFFERENCE DENSITY REMARK 3 ATTACHED TO CYS255, POSSIBLY THE RESULT OF PARTIAL OXIDATION, REMARK 3 WHICH WAS HOWEVER NOT MODELLED. CNS/O WERE ALSO USED IN REMARK 3 REFINEMENT. REMARK 4 REMARK 4 1O20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000001704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9566, 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.550 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.44 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG MME 5000(30%), 0.06M TRIS REMARK 280 CL(1M), 0.04M TRIS_BASE(1M), VAPOR DIFFUSION,SITTING DROP, REMARK 280 NANODROP, PH 8.40, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.66500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.66500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT IS A TETRAMER WITH 222 POINT SYMMETRY, REMARK 300 FORMED BY CRYSTALLOGRAPHIC SYMMETRY, AS ADJUDGED BY REMARK 300 EXTENSIVE HYDROPHOBIC CONTACTS BETWEEN THESE UNITS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.33000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 173.66000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 111.33000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 173.66000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ARG A 183 CD NE CZ NH1 NH2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 238 CD CE NZ REMARK 470 LYS A 269 NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 319 O HOH A 969 2.06 REMARK 500 O HOH A 664 O HOH A 1003 2.15 REMARK 500 O HOH A 518 O HOH A 821 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1002 O HOH A 1071 2565 1.91 REMARK 500 O HOH A 860 O HOH A 860 4567 1.95 REMARK 500 O HOH A 1002 O HOH A 1070 2565 1.97 REMARK 500 O HOH A 664 O HOH A 962 2565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 388 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 392 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 392 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 122 -118.53 -103.67 REMARK 500 HIS A 338 -85.43 -93.88 REMARK 500 ASP A 372 137.12 -177.93 REMARK 500 ARG A 388 52.45 -98.02 REMARK 500 PHE A 389 119.60 -165.04 REMARK 500 HIS A 390 -61.42 75.36 REMARK 500 THR A 402 -148.87 -120.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282169 RELATED DB: TARGETDB DBREF 1O20 A 1 415 UNP Q9WYC9 PROA_THEMA 1 415 SEQADV 1O20 MSE A -11 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 GLY A -10 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 SER A -9 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 ASP A -8 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 LYS A -7 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 ILE A -6 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 HIS A -5 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 HIS A -4 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 HIS A -3 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 HIS A -2 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 HIS A -1 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 HIS A 0 UNP Q9WYC9 EXPRESSION TAG SEQADV 1O20 MSE A 1 UNP Q9WYC9 MET 1 MODIFIED RESIDUE SEQADV 1O20 MSE A 78 UNP Q9WYC9 MET 78 MODIFIED RESIDUE SEQADV 1O20 MSE A 189 UNP Q9WYC9 MET 189 MODIFIED RESIDUE SEQRES 1 A 427 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 427 ASP GLU LEU LEU GLU LYS ALA LYS LYS VAL ARG GLU ALA SEQRES 3 A 427 TRP ASP VAL LEU ARG ASN ALA THR THR ARG GLU LYS ASN SEQRES 4 A 427 LYS ALA ILE LYS LYS ILE ALA GLU LYS LEU ASP GLU ARG SEQRES 5 A 427 ARG LYS GLU ILE LEU GLU ALA ASN ARG ILE ASP VAL GLU SEQRES 6 A 427 LYS ALA ARG GLU ARG GLY VAL LYS GLU SER LEU VAL ASP SEQRES 7 A 427 ARG LEU ALA LEU ASN ASP LYS ARG ILE ASP GLU MSE ILE SEQRES 8 A 427 LYS ALA CYS GLU THR VAL ILE GLY LEU LYS ASP PRO VAL SEQRES 9 A 427 GLY GLU VAL ILE ASP SER TRP VAL ARG GLU ASP GLY LEU SEQRES 10 A 427 ARG ILE ALA ARG VAL ARG VAL PRO ILE GLY PRO ILE GLY SEQRES 11 A 427 ILE ILE TYR GLU SER ARG PRO ASN VAL THR VAL GLU THR SEQRES 12 A 427 THR ILE LEU ALA LEU LYS SER GLY ASN THR ILE LEU LEU SEQRES 13 A 427 ARG GLY GLY SER ASP ALA LEU ASN SER ASN LYS ALA ILE SEQRES 14 A 427 VAL SER ALA ILE ARG GLU ALA LEU LYS GLU THR GLU ILE SEQRES 15 A 427 PRO GLU SER SER VAL GLU PHE ILE GLU ASN THR ASP ARG SEQRES 16 A 427 SER LEU VAL LEU GLU MSE ILE ARG LEU ARG GLU TYR LEU SEQRES 17 A 427 SER LEU VAL ILE PRO ARG GLY GLY TYR GLY LEU ILE SER SEQRES 18 A 427 PHE VAL ARG ASP ASN ALA THR VAL PRO VAL LEU GLU THR SEQRES 19 A 427 GLY VAL GLY ASN CYS HIS ILE PHE VAL ASP GLU SER ALA SEQRES 20 A 427 ASP LEU LYS LYS ALA VAL PRO VAL ILE ILE ASN ALA LYS SEQRES 21 A 427 THR GLN ARG PRO GLY THR CYS ASN ALA ALA GLU LYS LEU SEQRES 22 A 427 LEU VAL HIS GLU LYS ILE ALA LYS GLU PHE LEU PRO VAL SEQRES 23 A 427 ILE VAL GLU GLU LEU ARG LYS HIS GLY VAL GLU VAL ARG SEQRES 24 A 427 GLY CYS GLU LYS THR ARG GLU ILE VAL PRO ASP VAL VAL SEQRES 25 A 427 PRO ALA THR GLU ASP ASP TRP PRO THR GLU TYR LEU ASP SEQRES 26 A 427 LEU ILE ILE ALA ILE LYS VAL VAL LYS ASN VAL ASP GLU SEQRES 27 A 427 ALA ILE GLU HIS ILE LYS LYS TYR SER THR GLY HIS SER SEQRES 28 A 427 GLU SER ILE LEU THR GLU ASN TYR SER ASN ALA LYS LYS SEQRES 29 A 427 PHE VAL SER GLU ILE ASP ALA ALA ALA VAL TYR VAL ASN SEQRES 30 A 427 ALA SER THR ARG PHE THR ASP GLY GLY GLN PHE GLY PHE SEQRES 31 A 427 GLY ALA GLU ILE GLY ILE SER THR GLN ARG PHE HIS ALA SEQRES 32 A 427 ARG GLY PRO VAL GLY LEU ARG GLU LEU THR THR TYR LYS SEQRES 33 A 427 PHE VAL VAL LEU GLY GLU TYR HIS VAL ARG GLU MODRES 1O20 MSE A 78 MET SELENOMETHIONINE MODRES 1O20 MSE A 189 MET SELENOMETHIONINE HET MSE A 78 8 HET MSE A 189 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 HOH *299(H2 O) HELIX 1 1 ASP A 2 ARG A 19 1 18 HELIX 2 2 THR A 22 ARG A 40 1 19 HELIX 3 3 ARG A 40 ARG A 58 1 19 HELIX 4 4 LYS A 61 ALA A 69 1 9 HELIX 5 5 ASN A 71 LEU A 88 1 18 HELIX 6 6 PRO A 125 SER A 138 1 14 HELIX 7 7 GLY A 147 ASP A 149 5 3 HELIX 8 8 ALA A 150 LYS A 166 1 17 HELIX 9 9 PRO A 171 SER A 173 5 3 HELIX 10 10 ARG A 183 ILE A 190 1 8 HELIX 11 11 GLY A 204 ALA A 215 1 12 HELIX 12 12 ASP A 236 GLN A 250 1 15 HELIX 13 13 GLU A 265 HIS A 282 1 18 HELIX 14 14 CYS A 289 VAL A 296 1 8 HELIX 15 15 THR A 303 TRP A 307 5 5 HELIX 16 16 ASN A 323 SER A 335 1 13 HELIX 17 17 ASN A 346 ILE A 357 1 12 HELIX 18 18 SER A 367 THR A 371 5 5 HELIX 19 19 LEU A 397 GLU A 399 5 3 SHEET 1 A 3 VAL A 95 VAL A 100 0 SHEET 2 A 3 ARG A 106 PRO A 113 -1 O ILE A 107 N TRP A 99 SHEET 3 A 3 THR A 401 LEU A 408 -1 O LYS A 404 N VAL A 110 SHEET 1 B 4 VAL A 175 PHE A 177 0 SHEET 2 B 4 ILE A 142 ARG A 145 1 N LEU A 144 O GLU A 176 SHEET 3 B 4 ILE A 117 ILE A 120 1 N ILE A 117 O LEU A 143 SHEET 4 B 4 LEU A 198 PRO A 201 1 O LEU A 198 N GLY A 118 SHEET 1 C 7 VAL A 300 PRO A 301 0 SHEET 2 C 7 GLU A 285 GLY A 288 1 N GLY A 288 O VAL A 300 SHEET 3 C 7 ILE A 315 VAL A 321 1 O ILE A 316 N ARG A 287 SHEET 4 C 7 ALA A 258 HIS A 264 1 N LEU A 261 O ALA A 317 SHEET 5 C 7 CYS A 227 VAL A 231 1 N VAL A 231 O LEU A 262 SHEET 6 C 7 SER A 339 LEU A 343 1 O LEU A 343 N PHE A 230 SHEET 7 C 7 ALA A 361 VAL A 364 1 O TYR A 363 N GLU A 340 SHEET 1 D 2 ILE A 384 SER A 385 0 SHEET 2 D 2 GLY A 393 PRO A 394 -1 O GLY A 393 N SER A 385 LINK C GLU A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N ILE A 79 1555 1555 1.34 LINK C GLU A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ILE A 190 1555 1555 1.32 CRYST1 105.150 111.330 86.830 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011517 0.00000