data_1O22 # _entry.id 1O22 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O22 pdb_00001o22 10.2210/pdb1o22/pdb RCSB RCSB001706 ? ? WWPDB D_1000001706 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 282744 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1O22 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2003-02-15 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-A resolution reveals a new fold.' _citation.journal_abbrev Proteins _citation.journal_volume 56 _citation.page_first 607 _citation.page_last 610 _citation.year 2004 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15229892 _citation.pdbx_database_id_DOI 10.1002/prot.20138 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bakolitsa, C.' 1 ? primary 'Schwarzenbacher, R.' 2 ? primary 'McMullan, D.' 3 ? primary 'Brinen, L.S.' 4 ? primary 'Canaves, J.M.' 5 ? primary 'Dai, X.' 6 ? primary 'Deacon, A.M.' 7 ? primary 'Elsliger, M.A.' 8 ? primary 'Eshagi, S.' 9 ? primary 'Floyd, R.' 10 ? primary 'Godzik, A.' 11 ? primary 'Grittini, C.' 12 ? primary 'Grzechnik, S.K.' 13 ? primary 'Jaroszewski, L.' 14 ? primary 'Karlak, C.' 15 ? primary 'Klock, H.E.' 16 ? primary 'Koesema, E.' 17 ? primary 'Kovarik, J.S.' 18 ? primary 'Kreusch, A.' 19 ? primary 'Kuhn, P.' 20 ? primary 'Lesley, S.A.' 21 ? primary 'McPhillips, T.M.' 22 ? primary 'Miller, M.D.' 23 ? primary 'Morse, A.' 24 ? primary 'Moy, K.' 25 ? primary 'Ouyang, J.' 26 ? primary 'Page, R.' 27 ? primary 'Quijano, K.' 28 ? primary 'Robb, A.' 29 ? primary 'Spraggon, G.' 30 ? primary 'Stevens, R.C.' 31 ? primary 'van den Bedem, H.' 32 ? primary 'Velasquez, J.' 33 ? primary 'Vincent, J.' 34 ? primary 'von Delft, F.' 35 ? primary 'Wang, X.' 36 ? primary 'West, B.' 37 ? primary 'Wolf, G.' 38 ? primary 'Hodgson, K.O.' 39 ? primary 'Wooley, J.' 40 ? primary 'Wilson, I.A.' 41 ? # _cell.length_a 58.410 _cell.length_b 58.410 _cell.length_c 102.490 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1O22 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 1O22 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'orphan protein TM0875' 20343.340 1 ? ? ? ? 2 water nat water 18.015 102 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)RL(MSE)DILEILYYKKGKEFGILEKK(MSE)KEIFNETGVSLEPVNSELIGRIFLKIS VLEEGEEVPSFAIKALTPKENAVDLPLGDWTDLKNVFVEEIDYLDSYGD(MSE)KILSEKNWYKIYVPYSSVKKKNRNEL VEEF(MSE)KYFFESKGWNPGEYTFSVQEIDNLF ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMRLMDILEILYYKKGKEFGILEKKMKEIFNETGVSLEPVNSELIGRIFLKISVLEEGEEVPSFAIKAL TPKENAVDLPLGDWTDLKNVFVEEIDYLDSYGDMKILSEKNWYKIYVPYSSVKKKNRNELVEEFMKYFFESKGWNPGEYT FSVQEIDNLF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 282744 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 ARG n 1 15 LEU n 1 16 MSE n 1 17 ASP n 1 18 ILE n 1 19 LEU n 1 20 GLU n 1 21 ILE n 1 22 LEU n 1 23 TYR n 1 24 TYR n 1 25 LYS n 1 26 LYS n 1 27 GLY n 1 28 LYS n 1 29 GLU n 1 30 PHE n 1 31 GLY n 1 32 ILE n 1 33 LEU n 1 34 GLU n 1 35 LYS n 1 36 LYS n 1 37 MSE n 1 38 LYS n 1 39 GLU n 1 40 ILE n 1 41 PHE n 1 42 ASN n 1 43 GLU n 1 44 THR n 1 45 GLY n 1 46 VAL n 1 47 SER n 1 48 LEU n 1 49 GLU n 1 50 PRO n 1 51 VAL n 1 52 ASN n 1 53 SER n 1 54 GLU n 1 55 LEU n 1 56 ILE n 1 57 GLY n 1 58 ARG n 1 59 ILE n 1 60 PHE n 1 61 LEU n 1 62 LYS n 1 63 ILE n 1 64 SER n 1 65 VAL n 1 66 LEU n 1 67 GLU n 1 68 GLU n 1 69 GLY n 1 70 GLU n 1 71 GLU n 1 72 VAL n 1 73 PRO n 1 74 SER n 1 75 PHE n 1 76 ALA n 1 77 ILE n 1 78 LYS n 1 79 ALA n 1 80 LEU n 1 81 THR n 1 82 PRO n 1 83 LYS n 1 84 GLU n 1 85 ASN n 1 86 ALA n 1 87 VAL n 1 88 ASP n 1 89 LEU n 1 90 PRO n 1 91 LEU n 1 92 GLY n 1 93 ASP n 1 94 TRP n 1 95 THR n 1 96 ASP n 1 97 LEU n 1 98 LYS n 1 99 ASN n 1 100 VAL n 1 101 PHE n 1 102 VAL n 1 103 GLU n 1 104 GLU n 1 105 ILE n 1 106 ASP n 1 107 TYR n 1 108 LEU n 1 109 ASP n 1 110 SER n 1 111 TYR n 1 112 GLY n 1 113 ASP n 1 114 MSE n 1 115 LYS n 1 116 ILE n 1 117 LEU n 1 118 SER n 1 119 GLU n 1 120 LYS n 1 121 ASN n 1 122 TRP n 1 123 TYR n 1 124 LYS n 1 125 ILE n 1 126 TYR n 1 127 VAL n 1 128 PRO n 1 129 TYR n 1 130 SER n 1 131 SER n 1 132 VAL n 1 133 LYS n 1 134 LYS n 1 135 LYS n 1 136 ASN n 1 137 ARG n 1 138 ASN n 1 139 GLU n 1 140 LEU n 1 141 VAL n 1 142 GLU n 1 143 GLU n 1 144 PHE n 1 145 MSE n 1 146 LYS n 1 147 TYR n 1 148 PHE n 1 149 PHE n 1 150 GLU n 1 151 SER n 1 152 LYS n 1 153 GLY n 1 154 TRP n 1 155 ASN n 1 156 PRO n 1 157 GLY n 1 158 GLU n 1 159 TYR n 1 160 THR n 1 161 PHE n 1 162 SER n 1 163 VAL n 1 164 GLN n 1 165 GLU n 1 166 ILE n 1 167 ASP n 1 168 ASN n 1 169 LEU n 1 170 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM0875 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9WZX8_THEMA _struct_ref.pdbx_db_accession Q9WZX8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRLMDILEILYYKKGKEFGILEKKMKEIFNETGVSLEPVNSELIGRIFLKISVLEEGEEVPSFAIKALTPKENAVDLPLG DWTDLKNVFVEEIDYLDSYGDMKILSEKNWYKIYVPYSSVKKKNRNELVEEFMKYFFESKGWNPGEYTFSVQEIDNLF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O22 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WZX8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 158 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 158 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O22 MSE A 1 ? UNP Q9WZX8 ? ? 'expression tag' -11 1 1 1O22 GLY A 2 ? UNP Q9WZX8 ? ? 'expression tag' -10 2 1 1O22 SER A 3 ? UNP Q9WZX8 ? ? 'expression tag' -9 3 1 1O22 ASP A 4 ? UNP Q9WZX8 ? ? 'expression tag' -8 4 1 1O22 LYS A 5 ? UNP Q9WZX8 ? ? 'expression tag' -7 5 1 1O22 ILE A 6 ? UNP Q9WZX8 ? ? 'expression tag' -6 6 1 1O22 HIS A 7 ? UNP Q9WZX8 ? ? 'expression tag' -5 7 1 1O22 HIS A 8 ? UNP Q9WZX8 ? ? 'expression tag' -4 8 1 1O22 HIS A 9 ? UNP Q9WZX8 ? ? 'expression tag' -3 9 1 1O22 HIS A 10 ? UNP Q9WZX8 ? ? 'expression tag' -2 10 1 1O22 HIS A 11 ? UNP Q9WZX8 ? ? 'expression tag' -1 11 1 1O22 HIS A 12 ? UNP Q9WZX8 ? ? 'expression tag' 0 12 1 1O22 MSE A 13 ? UNP Q9WZX8 MET 1 'modified residue' 1 13 1 1O22 MSE A 16 ? UNP Q9WZX8 MET 4 'modified residue' 4 14 1 1O22 MSE A 37 ? UNP Q9WZX8 MET 25 'modified residue' 25 15 1 1O22 MSE A 114 ? UNP Q9WZX8 MET 102 'modified residue' 102 16 1 1O22 MSE A 145 ? UNP Q9WZX8 MET 133 'modified residue' 133 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1O22 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 46.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_details ;25.5 % PEG 4000; 0.085 M Tris pH 8.5; 0.17 M Na(Ac), 15 % Glycerol, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 8.50 ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM' _diffrn_detector.pdbx_collection_date 2002-10-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE-CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97780 1.0 2 0.91840 1.0 3 0.97920 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97780, 0.91840, 0.97920' # _reflns.entry_id 1O22 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.159 _reflns.d_resolution_high 2.000 _reflns.number_obs 12462 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 28.1000 _reflns.B_iso_Wilson_estimate 36.49 _reflns.pdbx_redundancy 11.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 90.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.375 _reflns_shell.meanI_over_sigI_obs 3.200 _reflns_shell.pdbx_redundancy 6.20 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1O22 _refine.ls_number_reflns_obs 11574 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.49 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.0 _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.182 _refine.ls_R_factor_R_free 0.238 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.100 _refine.ls_number_reflns_R_free 887 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 23.83 _refine.aniso_B[1][1] -0.02000 _refine.aniso_B[2][2] -0.02000 _refine.aniso_B[3][3] 0.04000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE BIOLOGICAL UNIT APPEARS TO BE A DIMER THAT STRADDLES THE CRYSTALLOGRAPHIC 4-FOLD. TLS GROUPS WERE CHOSEN WITH REFERENCE TO THE DIMER. WEAK DENSITY BOTH BEFORE FIRST AND AFTER LAST RESIDUE SUGGESTS THE GENERAL POSITION OF MORE N- AND C-TERMINAL RESIDUES THAN MODELLED HERE. CNS_SOLVE 1.1/CNS/XFIT/CCP4/TLS WERE ALSO USED IN REFINEMENT. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.175 _refine.pdbx_overall_ESU_R_Free 0.167 _refine.overall_SU_ML 0.111 _refine.overall_SU_B 8.183 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1223 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1325 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 29.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1272 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1144 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.444 1.978 ? 1714 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.825 3.000 ? 2697 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.319 5.000 ? 148 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.914 25.902 ? 61 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.381 15.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.177 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 183 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1369 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 246 'X-RAY DIFFRACTION' ? r_nbd_refined 0.193 0.200 ? 181 'X-RAY DIFFRACTION' ? r_nbd_other 0.243 0.200 ? 1168 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.081 0.200 ? 775 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.237 0.200 ? 68 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.140 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.300 0.200 ? 93 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.184 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.000 3.000 ? 743 'X-RAY DIFFRACTION' ? r_mcangle_it 3.707 5.000 ? 1210 'X-RAY DIFFRACTION' ? r_scbond_it 6.342 8.000 ? 529 'X-RAY DIFFRACTION' ? r_scangle_it 9.514 11.000 ? 504 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 757 _refine_ls_shell.R_factor_R_work 0.233 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.305 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1O22 _struct.title 'Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;ORPHAN PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, UNKNOWN FUNCTION ; _struct_keywords.entry_id 1O22 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 30 ? GLY A 45 ? PHE A 18 GLY A 33 1 ? 16 HELX_P HELX_P2 2 SER A 130 ? VAL A 132 ? SER A 118 VAL A 120 5 ? 3 HELX_P HELX_P3 3 ASN A 136 ? LYS A 152 ? ASN A 124 LYS A 140 1 ? 17 HELX_P HELX_P4 4 ASN A 155 ? GLY A 157 ? ASN A 143 GLY A 145 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 36 C ? ? ? 1_555 A MSE 37 N ? ? A LYS 24 A MSE 25 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 37 C ? ? ? 1_555 A LYS 38 N ? ? A MSE 25 A LYS 26 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A ASP 113 C ? ? ? 1_555 A MSE 114 N ? ? A ASP 101 A MSE 102 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 114 C ? ? ? 1_555 A LYS 115 N ? ? A MSE 102 A LYS 103 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? A PHE 144 C ? ? ? 1_555 A MSE 145 N ? ? A PHE 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale6 covale both ? A MSE 145 C ? ? ? 1_555 A LYS 146 N ? ? A MSE 133 A LYS 134 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 109 ? TYR A 111 ? ASP A 97 TYR A 99 A 2 MSE A 114 ? GLU A 119 ? MSE A 102 GLU A 107 A 3 TRP A 122 ? PRO A 128 ? TRP A 110 PRO A 116 A 4 ILE A 56 ? LEU A 66 ? ILE A 44 LEU A 54 A 5 LEU A 19 ? LYS A 25 ? LEU A 7 LYS A 13 A 6 TYR A 159 ? GLU A 165 ? TYR A 147 GLU A 153 B 1 PHE A 75 ? LEU A 80 ? PHE A 63 LEU A 68 B 2 PHE A 101 ? TYR A 107 ? PHE A 89 TYR A 95 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 111 ? N TYR A 99 O MSE A 114 ? O MSE A 102 A 2 3 N GLU A 119 ? N GLU A 107 O TRP A 122 ? O TRP A 110 A 3 4 O TYR A 123 ? O TYR A 111 N PHE A 60 ? N PHE A 48 A 4 5 O ILE A 59 ? O ILE A 47 N ILE A 21 ? N ILE A 9 A 5 6 N GLU A 20 ? N GLU A 8 O GLN A 164 ? O GLN A 152 B 1 2 N LYS A 78 ? N LYS A 66 O GLU A 103 ? O GLU A 91 # _atom_sites.entry_id 1O22 _atom_sites.fract_transf_matrix[1][1] 0.017120 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017120 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009757 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 ? ? ? A . n A 1 13 MSE 13 1 ? ? ? A . n A 1 14 ARG 14 2 ? ? ? A . n A 1 15 LEU 15 3 ? ? ? A . n A 1 16 MSE 16 4 ? ? ? A . n A 1 17 ASP 17 5 ? ? ? A . n A 1 18 ILE 18 6 6 ILE ILE A . n A 1 19 LEU 19 7 7 LEU LEU A . n A 1 20 GLU 20 8 8 GLU GLU A . n A 1 21 ILE 21 9 9 ILE ILE A . n A 1 22 LEU 22 10 10 LEU LEU A . n A 1 23 TYR 23 11 11 TYR TYR A . n A 1 24 TYR 24 12 12 TYR TYR A . n A 1 25 LYS 25 13 13 LYS LYS A . n A 1 26 LYS 26 14 14 LYS LYS A . n A 1 27 GLY 27 15 15 GLY GLY A . n A 1 28 LYS 28 16 16 LYS LYS A . n A 1 29 GLU 29 17 17 GLU GLU A . n A 1 30 PHE 30 18 18 PHE PHE A . n A 1 31 GLY 31 19 19 GLY GLY A . n A 1 32 ILE 32 20 20 ILE ILE A . n A 1 33 LEU 33 21 21 LEU LEU A . n A 1 34 GLU 34 22 22 GLU GLU A . n A 1 35 LYS 35 23 23 LYS LYS A . n A 1 36 LYS 36 24 24 LYS LYS A . n A 1 37 MSE 37 25 25 MSE MSE A . n A 1 38 LYS 38 26 26 LYS LYS A . n A 1 39 GLU 39 27 27 GLU GLU A . n A 1 40 ILE 40 28 28 ILE ILE A . n A 1 41 PHE 41 29 29 PHE PHE A . n A 1 42 ASN 42 30 30 ASN ASN A . n A 1 43 GLU 43 31 31 GLU GLU A . n A 1 44 THR 44 32 32 THR THR A . n A 1 45 GLY 45 33 33 GLY GLY A . n A 1 46 VAL 46 34 34 VAL VAL A . n A 1 47 SER 47 35 35 SER SER A . n A 1 48 LEU 48 36 36 LEU LEU A . n A 1 49 GLU 49 37 37 GLU GLU A . n A 1 50 PRO 50 38 38 PRO PRO A . n A 1 51 VAL 51 39 39 VAL VAL A . n A 1 52 ASN 52 40 40 ASN ASN A . n A 1 53 SER 53 41 41 SER SER A . n A 1 54 GLU 54 42 42 GLU GLU A . n A 1 55 LEU 55 43 43 LEU LEU A . n A 1 56 ILE 56 44 44 ILE ILE A . n A 1 57 GLY 57 45 45 GLY GLY A . n A 1 58 ARG 58 46 46 ARG ARG A . n A 1 59 ILE 59 47 47 ILE ILE A . n A 1 60 PHE 60 48 48 PHE PHE A . n A 1 61 LEU 61 49 49 LEU LEU A . n A 1 62 LYS 62 50 50 LYS LYS A . n A 1 63 ILE 63 51 51 ILE ILE A . n A 1 64 SER 64 52 52 SER SER A . n A 1 65 VAL 65 53 53 VAL VAL A . n A 1 66 LEU 66 54 54 LEU LEU A . n A 1 67 GLU 67 55 55 GLU GLU A . n A 1 68 GLU 68 56 56 GLU GLU A . n A 1 69 GLY 69 57 57 GLY GLY A . n A 1 70 GLU 70 58 58 GLU GLU A . n A 1 71 GLU 71 59 59 GLU GLU A . n A 1 72 VAL 72 60 60 VAL VAL A . n A 1 73 PRO 73 61 61 PRO PRO A . n A 1 74 SER 74 62 62 SER SER A . n A 1 75 PHE 75 63 63 PHE PHE A . n A 1 76 ALA 76 64 64 ALA ALA A . n A 1 77 ILE 77 65 65 ILE ILE A . n A 1 78 LYS 78 66 66 LYS LYS A . n A 1 79 ALA 79 67 67 ALA ALA A . n A 1 80 LEU 80 68 68 LEU LEU A . n A 1 81 THR 81 69 69 THR THR A . n A 1 82 PRO 82 70 70 PRO PRO A . n A 1 83 LYS 83 71 71 LYS LYS A . n A 1 84 GLU 84 72 72 GLU GLU A . n A 1 85 ASN 85 73 73 ASN ASN A . n A 1 86 ALA 86 74 74 ALA ALA A . n A 1 87 VAL 87 75 75 VAL VAL A . n A 1 88 ASP 88 76 76 ASP ASP A . n A 1 89 LEU 89 77 77 LEU LEU A . n A 1 90 PRO 90 78 78 PRO PRO A . n A 1 91 LEU 91 79 79 LEU LEU A . n A 1 92 GLY 92 80 80 GLY GLY A . n A 1 93 ASP 93 81 81 ASP ASP A . n A 1 94 TRP 94 82 82 TRP TRP A . n A 1 95 THR 95 83 83 THR THR A . n A 1 96 ASP 96 84 84 ASP ASP A . n A 1 97 LEU 97 85 85 LEU LEU A . n A 1 98 LYS 98 86 86 LYS LYS A . n A 1 99 ASN 99 87 87 ASN ASN A . n A 1 100 VAL 100 88 88 VAL VAL A . n A 1 101 PHE 101 89 89 PHE PHE A . n A 1 102 VAL 102 90 90 VAL VAL A . n A 1 103 GLU 103 91 91 GLU GLU A . n A 1 104 GLU 104 92 92 GLU GLU A . n A 1 105 ILE 105 93 93 ILE ILE A . n A 1 106 ASP 106 94 94 ASP ASP A . n A 1 107 TYR 107 95 95 TYR TYR A . n A 1 108 LEU 108 96 96 LEU LEU A . n A 1 109 ASP 109 97 97 ASP ASP A . n A 1 110 SER 110 98 98 SER SER A . n A 1 111 TYR 111 99 99 TYR TYR A . n A 1 112 GLY 112 100 100 GLY GLY A . n A 1 113 ASP 113 101 101 ASP ASP A . n A 1 114 MSE 114 102 102 MSE MSE A . n A 1 115 LYS 115 103 103 LYS LYS A . n A 1 116 ILE 116 104 104 ILE ILE A . n A 1 117 LEU 117 105 105 LEU LEU A . n A 1 118 SER 118 106 106 SER SER A . n A 1 119 GLU 119 107 107 GLU GLU A . n A 1 120 LYS 120 108 108 LYS LYS A . n A 1 121 ASN 121 109 109 ASN ASN A . n A 1 122 TRP 122 110 110 TRP TRP A . n A 1 123 TYR 123 111 111 TYR TYR A . n A 1 124 LYS 124 112 112 LYS LYS A . n A 1 125 ILE 125 113 113 ILE ILE A . n A 1 126 TYR 126 114 114 TYR TYR A . n A 1 127 VAL 127 115 115 VAL VAL A . n A 1 128 PRO 128 116 116 PRO PRO A . n A 1 129 TYR 129 117 117 TYR TYR A . n A 1 130 SER 130 118 118 SER SER A . n A 1 131 SER 131 119 119 SER SER A . n A 1 132 VAL 132 120 120 VAL VAL A . n A 1 133 LYS 133 121 121 LYS LYS A . n A 1 134 LYS 134 122 122 LYS LYS A . n A 1 135 LYS 135 123 123 LYS LYS A . n A 1 136 ASN 136 124 124 ASN ASN A . n A 1 137 ARG 137 125 125 ARG ARG A . n A 1 138 ASN 138 126 126 ASN ASN A . n A 1 139 GLU 139 127 127 GLU GLU A . n A 1 140 LEU 140 128 128 LEU LEU A . n A 1 141 VAL 141 129 129 VAL VAL A . n A 1 142 GLU 142 130 130 GLU GLU A . n A 1 143 GLU 143 131 131 GLU GLU A . n A 1 144 PHE 144 132 132 PHE PHE A . n A 1 145 MSE 145 133 133 MSE MSE A . n A 1 146 LYS 146 134 134 LYS LYS A . n A 1 147 TYR 147 135 135 TYR TYR A . n A 1 148 PHE 148 136 136 PHE PHE A . n A 1 149 PHE 149 137 137 PHE PHE A . n A 1 150 GLU 150 138 138 GLU GLU A . n A 1 151 SER 151 139 139 SER SER A . n A 1 152 LYS 152 140 140 LYS LYS A . n A 1 153 GLY 153 141 141 GLY GLY A . n A 1 154 TRP 154 142 142 TRP TRP A . n A 1 155 ASN 155 143 143 ASN ASN A . n A 1 156 PRO 156 144 144 PRO PRO A . n A 1 157 GLY 157 145 145 GLY GLY A . n A 1 158 GLU 158 146 146 GLU GLU A . n A 1 159 TYR 159 147 147 TYR TYR A . n A 1 160 THR 160 148 148 THR THR A . n A 1 161 PHE 161 149 149 PHE PHE A . n A 1 162 SER 162 150 150 SER SER A . n A 1 163 VAL 163 151 151 VAL VAL A . n A 1 164 GLN 164 152 152 GLN GLN A . n A 1 165 GLU 165 153 153 GLU GLU A . n A 1 166 ILE 166 154 154 ILE ILE A . n A 1 167 ASP 167 155 ? ? ? A . n A 1 168 ASN 168 156 ? ? ? A . n A 1 169 LEU 169 157 ? ? ? A . n A 1 170 PHE 170 158 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 159 1 HOH HOH A . B 2 HOH 2 160 2 HOH HOH A . B 2 HOH 3 161 3 HOH HOH A . B 2 HOH 4 162 4 HOH HOH A . B 2 HOH 5 163 5 HOH HOH A . B 2 HOH 6 164 6 HOH HOH A . B 2 HOH 7 165 7 HOH HOH A . B 2 HOH 8 166 8 HOH HOH A . B 2 HOH 9 167 9 HOH HOH A . B 2 HOH 10 168 10 HOH HOH A . B 2 HOH 11 169 11 HOH HOH A . B 2 HOH 12 170 12 HOH HOH A . B 2 HOH 13 171 13 HOH HOH A . B 2 HOH 14 172 14 HOH HOH A . B 2 HOH 15 173 15 HOH HOH A . B 2 HOH 16 174 16 HOH HOH A . B 2 HOH 17 175 17 HOH HOH A . B 2 HOH 18 176 19 HOH HOH A . B 2 HOH 19 177 20 HOH HOH A . B 2 HOH 20 178 21 HOH HOH A . B 2 HOH 21 179 22 HOH HOH A . B 2 HOH 22 180 23 HOH HOH A . B 2 HOH 23 181 24 HOH HOH A . B 2 HOH 24 182 27 HOH HOH A . B 2 HOH 25 183 28 HOH HOH A . B 2 HOH 26 184 29 HOH HOH A . B 2 HOH 27 185 30 HOH HOH A . B 2 HOH 28 186 31 HOH HOH A . B 2 HOH 29 187 32 HOH HOH A . B 2 HOH 30 188 34 HOH HOH A . B 2 HOH 31 189 35 HOH HOH A . B 2 HOH 32 190 36 HOH HOH A . B 2 HOH 33 191 37 HOH HOH A . B 2 HOH 34 192 38 HOH HOH A . B 2 HOH 35 193 40 HOH HOH A . B 2 HOH 36 194 41 HOH HOH A . B 2 HOH 37 195 42 HOH HOH A . B 2 HOH 38 196 43 HOH HOH A . B 2 HOH 39 197 44 HOH HOH A . B 2 HOH 40 198 45 HOH HOH A . B 2 HOH 41 199 46 HOH HOH A . B 2 HOH 42 200 47 HOH HOH A . B 2 HOH 43 201 48 HOH HOH A . B 2 HOH 44 202 49 HOH HOH A . B 2 HOH 45 203 51 HOH HOH A . B 2 HOH 46 204 52 HOH HOH A . B 2 HOH 47 205 53 HOH HOH A . B 2 HOH 48 206 54 HOH HOH A . B 2 HOH 49 207 55 HOH HOH A . B 2 HOH 50 208 57 HOH HOH A . B 2 HOH 51 209 58 HOH HOH A . B 2 HOH 52 210 59 HOH HOH A . B 2 HOH 53 211 61 HOH HOH A . B 2 HOH 54 212 62 HOH HOH A . B 2 HOH 55 213 63 HOH HOH A . B 2 HOH 56 214 64 HOH HOH A . B 2 HOH 57 215 65 HOH HOH A . B 2 HOH 58 216 66 HOH HOH A . B 2 HOH 59 217 67 HOH HOH A . B 2 HOH 60 218 69 HOH HOH A . B 2 HOH 61 219 71 HOH HOH A . B 2 HOH 62 220 74 HOH HOH A . B 2 HOH 63 221 76 HOH HOH A . B 2 HOH 64 222 77 HOH HOH A . B 2 HOH 65 223 78 HOH HOH A . B 2 HOH 66 224 79 HOH HOH A . B 2 HOH 67 225 80 HOH HOH A . B 2 HOH 68 226 81 HOH HOH A . B 2 HOH 69 227 82 HOH HOH A . B 2 HOH 70 228 84 HOH HOH A . B 2 HOH 71 229 86 HOH HOH A . B 2 HOH 72 230 87 HOH HOH A . B 2 HOH 73 231 88 HOH HOH A . B 2 HOH 74 232 89 HOH HOH A . B 2 HOH 75 233 90 HOH HOH A . B 2 HOH 76 234 91 HOH HOH A . B 2 HOH 77 235 92 HOH HOH A . B 2 HOH 78 236 94 HOH HOH A . B 2 HOH 79 237 96 HOH HOH A . B 2 HOH 80 238 97 HOH HOH A . B 2 HOH 81 239 98 HOH HOH A . B 2 HOH 82 240 99 HOH HOH A . B 2 HOH 83 241 100 HOH HOH A . B 2 HOH 84 242 101 HOH HOH A . B 2 HOH 85 243 102 HOH HOH A . B 2 HOH 86 244 103 HOH HOH A . B 2 HOH 87 245 104 HOH HOH A . B 2 HOH 88 246 105 HOH HOH A . B 2 HOH 89 247 107 HOH HOH A . B 2 HOH 90 248 110 HOH HOH A . B 2 HOH 91 249 112 HOH HOH A . B 2 HOH 92 250 115 HOH HOH A . B 2 HOH 93 251 116 HOH HOH A . B 2 HOH 94 252 118 HOH HOH A . B 2 HOH 95 253 120 HOH HOH A . B 2 HOH 96 254 122 HOH HOH A . B 2 HOH 97 255 123 HOH HOH A . B 2 HOH 98 256 125 HOH HOH A . B 2 HOH 99 257 126 HOH HOH A . B 2 HOH 100 258 127 HOH HOH A . B 2 HOH 101 259 128 HOH HOH A . B 2 HOH 102 260 129 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 37 A MSE 25 ? MET SELENOMETHIONINE 2 A MSE 114 A MSE 102 ? MET SELENOMETHIONINE 3 A MSE 145 A MSE 133 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5150 ? 1 MORE -38 ? 1 'SSA (A^2)' 16200 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-01 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2018-07-18 6 'Structure model' 1 5 2019-07-24 7 'Structure model' 1 6 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Derived calculations' 10 6 'Structure model' 'Refinement description' 11 7 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_database_related 3 6 'Structure model' software 4 6 'Structure model' struct_conn 5 7 'Structure model' database_2 6 7 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.classification' 2 6 'Structure model' '_software.name' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 7 'Structure model' '_database_2.pdbx_DOI' 5 7 'Structure model' '_database_2.pdbx_database_accession' 6 7 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 13.2640 12.2032 1.4161 -0.0162 -0.0099 -0.0535 0.0089 0.0113 -0.0099 2.0478 2.8520 3.4185 -1.9234 0.9316 -0.7955 0.0169 -0.0610 0.0611 0.1507 0.0339 -0.2103 -0.0437 0.2542 -0.0509 'X-RAY DIFFRACTION' 2 ? refined -9.9868 10.1668 1.8026 -0.0087 -0.0240 -0.0495 -0.0215 0.0207 -0.0072 2.1819 1.6048 0.2008 0.9926 -0.0441 0.2838 0.0983 -0.0849 0.0450 0.1843 -0.0922 0.1010 -0.0135 -0.0556 -0.0061 'X-RAY DIFFRACTION' 3 ? refined -14.9634 13.9063 1.0285 -0.0336 0.0101 -0.0203 -0.0239 0.0093 -0.0270 1.4636 3.5657 6.2397 0.4615 -1.0373 3.7767 0.1011 -0.0388 0.1686 0.0836 -0.0467 0.1373 -0.1617 0.0153 -0.0544 'X-RAY DIFFRACTION' 4 ? refined -18.6155 -14.4004 3.4478 0.0307 0.0785 0.0963 -0.0310 0.0338 0.0118 2.7590 4.1545 2.1293 -1.6436 0.9511 -2.2483 -0.1310 -0.3179 -0.4976 -0.0153 0.1814 0.1767 0.2977 -0.2586 -0.0504 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 73 61 A 107 95 ? A A 'X-RAY DIFFRACTION' ? 2 2 A 18 6 A 26 14 ? A A 'X-RAY DIFFRACTION' ? 3 2 A 52 40 A 72 60 ? A A 'X-RAY DIFFRACTION' ? 4 2 A 108 96 A 132 120 ? A A 'X-RAY DIFFRACTION' ? 5 2 A 155 143 A 166 154 ? A A 'X-RAY DIFFRACTION' ? 6 3 A 133 121 A 154 142 ? A A 'X-RAY DIFFRACTION' ? 7 4 A 27 15 A 51 39 ? A A 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement . ? 1 SCALA 'data scaling' . ? 2 RESOLVE 'model building' . ? 3 SOLVE phasing . ? 4 CNS refinement . ? 5 XFIT 'data reduction' . ? 6 MOSFLM 'data reduction' . ? 7 CCP4 'data scaling' '(SCALA)' ? 8 RESOLVE phasing . ? 9 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 42 ? B O A HOH 196 ? ? 1.95 2 1 OE1 A GLU 8 ? ? O A HOH 219 ? ? 2.07 3 1 O A HOH 213 ? ? O A HOH 219 ? ? 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 108 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 45.78 _pdbx_validate_torsion.psi -106.55 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 20 ? CG1 ? A ILE 32 CG1 2 1 Y 1 A ILE 20 ? CD1 ? A ILE 32 CD1 3 1 Y 1 A LYS 50 ? NZ ? A LYS 62 NZ 4 1 Y 1 A LYS 86 ? CG ? A LYS 98 CG 5 1 Y 1 A LYS 86 ? CD ? A LYS 98 CD 6 1 Y 1 A LYS 86 ? CE ? A LYS 98 CE 7 1 Y 1 A LYS 86 ? NZ ? A LYS 98 NZ 8 1 Y 1 A GLN 152 ? CD ? A GLN 164 CD 9 1 Y 1 A GLN 152 ? OE1 ? A GLN 164 OE1 10 1 Y 1 A GLN 152 ? NE2 ? A GLN 164 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 12 1 Y 1 A HIS 0 ? A HIS 12 13 1 Y 1 A MSE 1 ? A MSE 13 14 1 Y 1 A ARG 2 ? A ARG 14 15 1 Y 1 A LEU 3 ? A LEU 15 16 1 Y 1 A MSE 4 ? A MSE 16 17 1 Y 1 A ASP 5 ? A ASP 17 18 1 Y 1 A ASP 155 ? A ASP 167 19 1 Y 1 A ASN 156 ? A ASN 168 20 1 Y 1 A LEU 157 ? A LEU 169 21 1 Y 1 A PHE 158 ? A PHE 170 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #